BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42395.1 Length=797 Score E Sequences producing significant alignments: (Bits) Value Ahg321920 jgi|Araly1|321920|fgenesh1_pm.C_scaffold_4001977 375 2e-103 Ahg935100 jgi|Araly1|935100|scaffold_403088.1 289 3e-77 Ahg919738 jgi|Araly1|919738|scaffold_101019.1 279 2e-74 > Ahg321920 jgi|Araly1|321920|fgenesh1_pm.C_scaffold_4001977 Length=312 Score = 375 bits (203), Expect = 2e-103 Identities = 280/315 (89%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 55 ATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGAGAAATCAGA-GGGAAAGTGTGTTA 112 ||||| || |||||||| ||||||||| |||||||||||||||| ||| | ||||||| Sbjct 1 ATGGC-AACAAATTCTGAAAGCTCGTTTAAAGCAGAGAAATCAGATGGG-GACTGTGTTA 58 Query 113 CGACGACTACTG-AAGCAC-A-A-CAAAGTAGTCAACCTG-TTTTGAGCAAGGAAGAGGA 167 | || ||||| | || ||| | | ||||||||| | | ||||||||||||||||||| Sbjct 59 CTACTACTAC-GAAACCACAACAGCAAAGTAGT----CGGATTTTGAGCAAGGAAGAGGA 113 Query 168 GAAAGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTTCTACACTCTTCCTGAGATGAT 227 |||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||| Sbjct 114 GAAAGTGAGAGATAACTACTTGTTCTGCTGTGAGAATTTTTACACTTTTCCTGAGATGAT 173 Query 228 CAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCACTGTGACAAAGGTTTTCAGGGA 287 ||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 174 CAAGTACATGAAGGAGAATCATGGTGTAGGACAAACCACTGTGACAAAGGTTTTCAGGGA 233 Query 288 ACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCTCAGAAAAGAATGAAGGC 347 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | Sbjct 234 ACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCACAGACTAGAATGAAGAC 293 Query 348 AAGAACAACAACAAC 362 ||||||||||||||| Sbjct 294 AAGAACAACAACAAC 308 > Ahg935100 jgi|Araly1|935100|scaffold_403088.1 Length=458 Score = 289 bits (156), Expect = 3e-77 Identities = 280/335 (84%), Gaps = 27/335 (8%) Strand=Plus/Plus Query 45 AGAGAGAGTAATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGAGAAATCAGA-GGGA 102 |||||||| |||||| || ||||||||| ||||||||||| || ||||||||||| ||| Sbjct 134 AGAGAGAGGAATGGC-AACAAATTCTGGAAGCTCGTTTGAGGCCGAGAAATCAGATGGG- 191 Query 103 AAGTGTGTTACGACGACTACTGAAGCACAACAAAGTAGTCAACCTGTTTTGAGCAAGGAA 162 |||||||| || |||||| ||||||||| || | || | |||| ||| Sbjct 192 GAGTGTGTT---ACTACTACTAAAGCACAAC--AG-A---AA---G---TGAG--AGGTC 234 Query 163 GAGGAGAAAGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTTCTACACTCTTCCTGAG 222 || | | | || |||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 235 GA--CG-ACG-GATAGATAGCTACTTGTTCTGCTATCAGAATTTCTACACTCTTCCTGAG 290 Query 223 ATGATCAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCACTGTGACAAAG-GTTTT 281 |||||||| | ||||||||||| ||||||||||| | |||||| |||| |||| ||||| Sbjct 291 ATGATCAAGTACATGAAGGAGAATCATGGTGTAGGAGAAACCAAAGTGA-AAAGTGTTTT 349 Query 282 CAGGGAACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCTCAGAAAAGAAT 341 ||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 350 CAGGGAACTTTTACAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCACAGGAAAGAAT 409 Query 342 GAAGGCAAGAACAACAACAACAACTTGAACAGAGG 376 ||| |||||||||||||||| ||||||||||||| Sbjct 410 GAAAACAAGAACAACAACAACTACTTGAACAGAGG 444 > Ahg919738 jgi|Araly1|919738|scaffold_101019.1 Length=541 Score = 279 bits (151), Expect = 2e-74 Identities = 282/341 (83%), Gaps = 25/341 (7%) Strand=Plus/Plus Query 46 GAGAGAGTAATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGA-GA-A-ATCAGAGGG 101 ||||||| |||| | || ||||||||| |||| |||||| ||||| || | |||||| || Sbjct 12 GAGAGAGGAATGAC-AACAAATTCTGGAAGCTTGTTTGAGGCAGAGGAGATATCAGATGG 70 Query 102 AAAGTGTGTTACGACGACT-----AC-TGAAGCACAACA-AA-GT---A-GT-CAACCTG 148 | |||||||||| || ||| || ||| || || || || | || | | | | Sbjct 71 AGAGTGTGTTACTACTACTAAAACACAAAAAGTGCAGCAGAATGTGAGAGGTGC-A-CGG 128 Query 149 -TTTTGAGCAAGGAAGAGGAGAA-AGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTT 206 |||||||||||||||||||||| | ||||||||||||||||||||||||| | ||||| Sbjct 129 ATTTTGAGCAAGGAAGAGGAGAATA-AGAGAGATAGCTACTTGTTCTGCTGTCAGAATTT 187 Query 207 CTACACTCTTCCTGAGATGATCAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCAC 266 |||||||||||||||||||||||| | ||||||||||| ||||||| ||| | ||||||| Sbjct 188 CTACACTCTTCCTGAGATGATCAAATACATGAAGGAGAATCATGGTATAGGAGAAACCAC 247 Query 267 TGTGACAAAGGTTTTCAGGGAACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGA 326 ||||| ||| |||||||| ||||| || ||||||||||||||||||||||||||| |||| Sbjct 248 TGTGAAAAATGTTTTCAGAGAACTGTTGAAAGGTAGAAAAGCTGAAGCATATCTCCGAGA 307 Query 327 ATCTCAGAAAAGAATGAAGGCAAGAAC-AAC-AACAACAAC 365 |||||| |||||||||||| |||||| || ||||||||| Sbjct 308 ATCTCAAAAAAGAATGAAGATAAGAACTAAAGAACAACAAC 348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29430891924 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5