BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42395.1
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321920 jgi|Araly1|321920|fgenesh1_pm.C_scaffold_4001977 375 2e-103
Ahg935100 jgi|Araly1|935100|scaffold_403088.1 289 3e-77
Ahg919738 jgi|Araly1|919738|scaffold_101019.1 279 2e-74
> Ahg321920 jgi|Araly1|321920|fgenesh1_pm.C_scaffold_4001977
Length=312
Score = 375 bits (203), Expect = 2e-103
Identities = 280/315 (89%), Gaps = 14/315 (4%)
Strand=Plus/Plus
Query 55 ATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGAGAAATCAGA-GGGAAAGTGTGTTA 112
||||| || |||||||| ||||||||| |||||||||||||||| ||| | |||||||
Sbjct 1 ATGGC-AACAAATTCTGAAAGCTCGTTTAAAGCAGAGAAATCAGATGGG-GACTGTGTTA 58
Query 113 CGACGACTACTG-AAGCAC-A-A-CAAAGTAGTCAACCTG-TTTTGAGCAAGGAAGAGGA 167
| || ||||| | || ||| | | ||||||||| | | |||||||||||||||||||
Sbjct 59 CTACTACTAC-GAAACCACAACAGCAAAGTAGT----CGGATTTTGAGCAAGGAAGAGGA 113
Query 168 GAAAGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTTCTACACTCTTCCTGAGATGAT 227
|||||||||||||| |||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct 114 GAAAGTGAGAGATAACTACTTGTTCTGCTGTGAGAATTTTTACACTTTTCCTGAGATGAT 173
Query 228 CAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCACTGTGACAAAGGTTTTCAGGGA 287
||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 174 CAAGTACATGAAGGAGAATCATGGTGTAGGACAAACCACTGTGACAAAGGTTTTCAGGGA 233
Query 288 ACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCTCAGAAAAGAATGAAGGC 347
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 234 ACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCACAGACTAGAATGAAGAC 293
Query 348 AAGAACAACAACAAC 362
|||||||||||||||
Sbjct 294 AAGAACAACAACAAC 308
> Ahg935100 jgi|Araly1|935100|scaffold_403088.1
Length=458
Score = 289 bits (156), Expect = 3e-77
Identities = 280/335 (84%), Gaps = 27/335 (8%)
Strand=Plus/Plus
Query 45 AGAGAGAGTAATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGAGAAATCAGA-GGGA 102
|||||||| |||||| || ||||||||| ||||||||||| || ||||||||||| |||
Sbjct 134 AGAGAGAGGAATGGC-AACAAATTCTGGAAGCTCGTTTGAGGCCGAGAAATCAGATGGG- 191
Query 103 AAGTGTGTTACGACGACTACTGAAGCACAACAAAGTAGTCAACCTGTTTTGAGCAAGGAA 162
|||||||| || |||||| ||||||||| || | || | |||| |||
Sbjct 192 GAGTGTGTT---ACTACTACTAAAGCACAAC--AG-A---AA---G---TGAG--AGGTC 234
Query 163 GAGGAGAAAGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTTCTACACTCTTCCTGAG 222
|| | | | || |||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 235 GA--CG-ACG-GATAGATAGCTACTTGTTCTGCTATCAGAATTTCTACACTCTTCCTGAG 290
Query 223 ATGATCAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCACTGTGACAAAG-GTTTT 281
|||||||| | ||||||||||| ||||||||||| | |||||| |||| |||| |||||
Sbjct 291 ATGATCAAGTACATGAAGGAGAATCATGGTGTAGGAGAAACCAAAGTGA-AAAGTGTTTT 349
Query 282 CAGGGAACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCTCAGAAAAGAAT 341
||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 350 CAGGGAACTTTTACAAGGTAGAAAAGCTGAAGCATATCTCAGAGAATCACAGGAAAGAAT 409
Query 342 GAAGGCAAGAACAACAACAACAACTTGAACAGAGG 376
||| |||||||||||||||| |||||||||||||
Sbjct 410 GAAAACAAGAACAACAACAACTACTTGAACAGAGG 444
> Ahg919738 jgi|Araly1|919738|scaffold_101019.1
Length=541
Score = 279 bits (151), Expect = 2e-74
Identities = 282/341 (83%), Gaps = 25/341 (7%)
Strand=Plus/Plus
Query 46 GAGAGAGTAATGGCGAA-AAATTCTGGTAGCTCGTTTGAAGCAGA-GA-A-ATCAGAGGG 101
||||||| |||| | || ||||||||| |||| |||||| ||||| || | |||||| ||
Sbjct 12 GAGAGAGGAATGAC-AACAAATTCTGGAAGCTTGTTTGAGGCAGAGGAGATATCAGATGG 70
Query 102 AAAGTGTGTTACGACGACT-----AC-TGAAGCACAACA-AA-GT---A-GT-CAACCTG 148
| |||||||||| || ||| || ||| || || || || | || | | | |
Sbjct 71 AGAGTGTGTTACTACTACTAAAACACAAAAAGTGCAGCAGAATGTGAGAGGTGC-A-CGG 128
Query 149 -TTTTGAGCAAGGAAGAGGAGAA-AGTGAGAGATAGCTACTTGTTCTGCTGTGAAAATTT 206
|||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||
Sbjct 129 ATTTTGAGCAAGGAAGAGGAGAATA-AGAGAGATAGCTACTTGTTCTGCTGTCAGAATTT 187
Query 207 CTACACTCTTCCTGAGATGATCAATTTCATGAAGGAGATTCATGGTGTAGAACAAACCAC 266
|||||||||||||||||||||||| | ||||||||||| ||||||| ||| | |||||||
Sbjct 188 CTACACTCTTCCTGAGATGATCAAATACATGAAGGAGAATCATGGTATAGGAGAAACCAC 247
Query 267 TGTGACAAAGGTTTTCAGGGAACTTTTAAAAGGTAGAAAAGCTGAAGCATATCTCAGAGA 326
||||| ||| |||||||| ||||| || ||||||||||||||||||||||||||| ||||
Sbjct 248 TGTGAAAAATGTTTTCAGAGAACTGTTGAAAGGTAGAAAAGCTGAAGCATATCTCCGAGA 307
Query 327 ATCTCAGAAAAGAATGAAGGCAAGAAC-AAC-AACAACAAC 365
|||||| |||||||||||| |||||| || |||||||||
Sbjct 308 ATCTCAAAAAAGAATGAAGATAAGAACTAAAGAACAACAAC 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29430891924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5