BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42400.1
Length=1834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483334 jgi|Araly1|483334|fgenesh2_kg.4__2394__AT2G42400.1 2687 0.0
Ahg497425 jgi|Araly1|497425|fgenesh2_kg.409__2__AT2G42400.1 2645 0.0
> Ahg483334 jgi|Araly1|483334|fgenesh2_kg.4__2394__AT2G42400.1
Length=1783
Score = 2687 bits (1455), Expect = 0.0
Identities = 1678/1780 (94%), Gaps = 37/1780 (2%)
Strand=Plus/Plus
Query 73 TCTTCTTCTTCATCGCGATATCTCCGGTGTCTTCTTCGTCTCCATCAGAAGAAGAAGCTC 132
|||| ||| ||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 18 TCTTGTTCCTCATCGCGATAGCTCCTGTGTCTTCTTCGTCTCCATC------CGAAGCTC 71
Query 133 TCTGTATCCATCCATATCG--AA--AA-A-CCAGAGATCGGAGGAAGGAGAGAGAGATAC 186
||| |||| ||| | | || || || | ||||||||||||||||||||||||||| ||
Sbjct 72 TCTTTATCAATCTAAACCGAAAATGAATAGCCAGAGATCGGAGGAAGGAGAGAGAGAGAC 131
Query 187 CAATCTCT-GTTGCTTTGGTTTTAAGGGTTTAGAGGAGATGTCAAACCACCCGAAGATCA 245
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 132 CAATCGCTGGTTGCTTTGGTTTTGAGGGTTTAGAGGAGATGTCAAACCACCCGAAGATCA 191
Query 246 C------A---TCGGCGCATCAGAATGTGGAGGAGAAGCTAAGGGAACTTCAGGAGAGGT 296
| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CATGTGTATCTTCGGCGCATCAGAATGTGGAGGAGAAGCTAAGGGAACTTCAGGAGAGGT 251
Query 297 TCTGTCATCTTCAAGCTGCTAGGAAAGAAGGGCGGCATGGTGACCTTGCGCTTTTAGAAG 356
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 252 TCTGTCATCTTCAGGCTGCTAGGAAAGAAGGGCGCCATGGTGACCTTGCACTTTTGGAAG 311
Query 357 CCCAAATCTCTCAGAATATTCGGGAGTGGCAAGCTGAACTCACTGCTCCTTCTCCTGAAT 416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 312 CCCAAATCTCTCAGAATATTCGTGAGTGGCAAGCTGAACTCACTGCTCCTTCTCCTGAAT 371
Query 417 CTTCTCTGT-TGGGTGAAGGTATTAGCCAATTCCTTGAGGAGTTTGCTCCTCTGTTGAAA 475
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTTCTCT-TCTGGGTGAAGGTATTAGCCAATTCCTTGAGGAGTTTGCTCCTCTGTTGAAA 430
Query 476 TTAGACGAGGAGGATGATGCAACTAGTACGCTAAAAGAACATGCTGGAGCAAAGCCTGAT 535
||||||||||||||||||||||||||||||||||| ||||| |||| | |||||||| |
Sbjct 431 TTAGACGAGGAGGATGATGCAACTAGTACGCTAAAGGAACACGCTGCACCAAAGCCTCAG 490
Query 536 CCTGAGGGTTTTTCTCAAAGCTTGTGCCCTCCTGAATGGACATCTGAGAATTTTAGTCAA 595
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CCTGACGGTTTCGCTCAAAGCTTGTGCCCTCCTGAATGGACATCTGAGAATTTTAGTCAA 550
Query 596 AGTCCTTTCAACGGAAATTTCTCCTGCGGCTTTGAGGATGCTCTTAATAGCACAGAAACA 655
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AGTCCTTTCAATGGAAATTTCTCCTGCGGCTTTGAGGATGCTCTTAATAGCACAGAAACA 610
Query 656 CATGGCCAGCAACTCCATTATGGATATGAAGGGTTTGATCCAAGCATAAACTCCGCTCCT 715
|||||| ||||||||||||||| || ||||||||||||||||||| ||||| ||||||||
Sbjct 611 CATGGCGAGCAACTCCATTATGCATTTGAAGGGTTTGATCCAAGCGTAAACACCGCTCCT 670
Query 716 GATTTCCATGACCAAAAACTCAGCAGCAACTTGGATATAACTTCTCAGTATGATTATATT 775
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 671 GATTTCCATGACCAAAAACTCAACAGCAACCTGGATATAACTTCTCAGTATGATTCTATT 730
Query 776 TTCTCCGAAGTGCGTCAGGAACTAGATAACAGCCCTTCCACTAAGCTTGATTCTTCTGAA 835
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 731 TTCTCCGAAGTGCGTCAGGAACTCTATAACAGCCCTTCCATTAAGCTTGATTCTTCTGAA 790
Query 836 GAGATTGACAACTTTGCTGAATTTTCTACTCCATCAAGTGTCCGTGTGCCTCCATCTGCT 895
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 791 AAGATTGACAACTTTGCTGAATTTACTACTCCATCAAGTGTCCGAGTGCCTCCATCTGCT 850
Query 896 TTTCTGGGACCTAAGTGTGCACTATGGGATTGCACAAGGCCTGCTCAGGGCTCCGAGTGG 955
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 851 TTTCTAGGACCTAAGTGTGCACTATGGGATTGCACAAGGCCTGCTCAGGGATCTGAGTGG 910
Query 956 TACCTGGATTACTGCAGTAACTACCATGGGACTCTAGCTCTGAATGAAGATTCGCCTGGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TACCTGGATTACTGCAGTAACTACCATGGGACTCTAGCTCTGAATGAAGATTCGCCTGGC 970
Query 1016 ACAGCACCTGTATTGAGGCCAGGGGGCATCAGTTTGAAAGATAATCTATTGATTGATGCT 1075
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 971 ACAGCACCTGTCTTAAGGCCGGGGGGCATCAGTTTGAAAGATAATCTATTGATTGATGCT 1030
Query 1076 CTTCGTGCAAAGACTCAGGGTAAGAATGTTGGGATCCCAGTGTGTGAAGGAGCTGTTAAC 1135
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1031 CTTCGTGCAAAGACTCAGGGTAAGAATGTTGGCATCCCAGTGTGTGAAGGAGCTGTTAAC 1090
Query 1136 ACAAAATGCCCATGGAACGCAGCAGAGCTATTTCATCTTGAACTGGTTGAAGGCGAAACA 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 ACAAAATGCCCATGGAACGCAGCAGAGCTATTTCATCTTGAACTGGTTGAAGGCGAAACG 1150
Query 1196 ATTAGAGAGTGGCTCTTCTTTGACAAACCTAGAAGAGCATATGATAGCGGAAACCGAAAG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 ATTAGAGAGTGGCTCTTCTTTGACAAACCTAGAAGAGCATATGATAGCGGAAACCGAAAG 1210
Query 1256 CAAAGATCACTTCCAGATTACAGTGGAAGAGGTTGGCATGAATCAAGAAAACAACTGATG 1315
||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1211 CAAAGATCACTTCCAGATTACAGTGGACGAGGTTGGCATGAATCAAGAAAAGTACCGATG 1270
Query 1316 AAGGAACAAGAAGGCCAGAAGAGATCTTACTATATGGATCCACAACCTCCAGGTCCCTTT 1375
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1271 AAGGAACAAGAAGGCCAGAAGAGATCATACTATATGGATCCACAACCTCCAGGTCCCTTT 1330
Query 1376 GAGTGGCATCTCTTTGAATACCAAATCAATGAATCTGACGCATGTGCGTTATATCGCCTA 1435
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1331 GAGTGGCATCTCTTTGAATACCAAATCAATGAATCTGACGCATGTGCGTTATATCGGCTA 1390
Query 1436 GAACTTAAAGTAGGAAATGGAAAGAAGAGTCCTAAGGGAAAGATTTCAAAAGACCCTCTG 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GAACTTAAAGTAGGAAATGGAAAGAAGAGTCCTAAGGGAAAGATTTCAAAAGACCCTCTA 1450
Query 1496 GCTGATCTGCAGAAGAAGATGGGACAGTTTAAAGTGGCTTCAGACAAACCCTCTCCTCCA 1555
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1451 GCTGATCTGCAGAAGAAGATGGGACAGTTTAAAGTGGCGTCAGACAAACCCTCTCCTCCA 1510
Query 1556 ACCAAAGGTCGTAAGGAGTGAAGTTAGCTATTGGTAATCTAACTCAAGACTCCTGCAACA 1615
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1511 ACCAAAGGTCGTAAGGAGTGAAGTTAGCTATTGGCAATCTAACTCAAGACTCCTGCAACA 1570
Query 1616 ATAGCTCCAAGTTGTCTCCAGCATTCTACAAAAGAGCCATCGCCACCTCTGTTTTCtttt 1675
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 1571 ATAGCTCCAAGTTGTCTCCAGCATTCTACAAAAGAGCCATCGTCATCTCTGTTTT-TTTT 1629
Query 1676 tttttttCTTTCTGACTGTATTATGAAGAGATAGGATC-T-TT-GATGTGTTGTGTTAAT 1732
| ||||||||||||||||||| ||||||||||| | || ||||||||||||||||
Sbjct 1630 T------CTTTCTGACTGTATTATGACGAGATAGGATCATCTTTGATGTGTTGTGTTAAT 1683
Query 1733 ATGGACAAGTCTGGTCTTTGCCCTTTTTCTTGATAGAATC-GTAGATGGGTTT-GTAAAT 1790
|||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||
Sbjct 1684 ATGGACAAGTCTGGTCTTTGCCCTTTTTCTTGATAGAATCTG-AGATGGGTTTTGTAAAT 1742
Query 1791 TTTTGCATTTTATTTTTCTCCTTTAAAACCACAAGGATTT 1830
||||||||||||||||||| || |||||||| ||||||||
Sbjct 1743 TTTTGCATTTTATTTTTCTGCTCTAAAACCATAAGGATTT 1782
> Ahg497425 jgi|Araly1|497425|fgenesh2_kg.409__2__AT2G42400.1
Length=1693
Score = 2645 bits (1432), Expect = 0.0
Identities = 1616/1699 (95%), Gaps = 35/1699 (2%)
Strand=Plus/Plus
Query 157 CCAGAGATCGGAGGAAGGAGAGAGAGATACCAATCTCTGTTGCTTTGGTTTTAAGGGTTT 216
||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||
Sbjct 6 CCAGAGATCGGAGGAAGGAGAGAGAGAGACCAATCGCTGTTGCTTTGGTTTTGAGGGTTT 65
Query 217 AGAGGAGATGTCAAACCACCCGAAGATCAC------A---TCGGCGCATCAGAATGTGGA 267
|||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 66 AGAGGAGATGTCAAACCATCCGAAGATCACATGTGTATCTTCGGCGCATCAGAATGTGGA 125
Query 268 GGAGAAGCTAAGGGAACTTCAGGAGAGGTTCTGTCATCTTCAAGCTGCTAGGAAAGAAGG 327
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 126 GGAGAAGCTAAGGGAACTTCAGGAGAGGTTCTGTCATCTTCAGGCTGCTAGGAAAGAAGG 185
Query 328 GCGGCATGGTGACCTTGCGCTTTTAGAAGCCCAAATCTCTCAGAATATTCGGGAGTGGCA 387
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 186 GCGCCATGGTGACCTTGCGCTTTTGGAAGCCCAAATCTCTCAGAATATTCGTGAGTGGCA 245
Query 388 AGCTGAACTCACTGCTCCTTCTCCTGAATCTTCTCTGT-TGGGTGAAGGTATTAGCCAAT 446
||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 246 AGCTGAACTTACTGCTCCTTCTCCTGAATCTTCTCT-TCTGGGTGAAGGTATTAGCCAAT 304
Query 447 TCCTTGAGGAGTTTGCTCCTCTGTTGAAATTAGACGAGGAGGATGATGCAACTAGTACGC 506
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 305 TCCTTGAGGAGTTTGCTCCTATGTTGAAATTAGACGAGGAGGATGATGCAACTAGTACGC 364
Query 507 TAAAAGAACA-TGCTGGAGC-AAAGCCTGATCCTGAGGGTTTTTCTCAAAGCTTGTGCCC 564
|||| ||||| | ||| | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 365 TAAAGGAACACT-CTGCA-CAAAAGCCTGATCCTGAGGGTTTCGCTCAAAGCTTGTGCCC 422
Query 565 TCCTGAATGGACATCTGAGAATTTTAGTCAAAGTCCTTTCAACGGAAATTTCTCCTGCGG 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 423 TCCTGAATGGACATCTGAGAATTTTAGTCAAAGTCCTTTCAACGGAAATTTCTCCTGCAG 482
Query 625 CTTTGAGGATGCTCTTAATAGCACAGAAACACATGGCCAGCAACTCCATTATGGATATGA 684
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 483 CTTTGAGGATGCTCTTAATAACACAGAAACACGTGGCCAGCAACTCCATTATGGATATGA 542
Query 685 AGGGTTTGATCCAAGCATAAACTCCGCTCCTGATTTCCATGACCAAAAACTCAGCAGCAA 744
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 543 AGGGTTTGATCCAAGCATAAACACCGCTCCTGATTTCCATGACCAAAAACTCAGCAGCAA 602
Query 745 CTTGGATATAACTTCTCAGTATGATTATATTTTCTCCGAAGTGCGTCAGGAACTAGATAA 804
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 603 CTTGGATATAACTTCTCAGTATGATTATATTTTGTCGGAAGTGCGTCAGGAACTCGATAA 662
Query 805 CAGCCCTTCCACT-AAGCTTGATTCTTCTGAAGAGATTGACAACTTTGCTGAATTTTCTA 863
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 663 CAGCCCTTCCA-TCAAGCTTGATTCTTCTGAAGAGATTGACAACTTTACTGAATTTACGA 721
Query 864 CTCCATCAAGTGTCCGTGTGCCTCCATCTGCTTTTCTGGGACCTAAGTGTGCACTATGGG 923
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 722 CTCCATCAAGTGTCCGTGTGCCTCCATCTGCATTTCTGGGACCTAAGTGTGCACTATGGG 781
Query 924 ATTGCACAAGGCCTGCTCAGGGCTCCGAGTGGTACCTGGATTACTGCAGTAACTACCATG 983
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 782 ATTGCACAAGGCCTGCTCAGGGATCTGAGTGGTACCTGGATTACTGCAGTAACTACCATG 841
Query 984 GGACTCTAGCTCTGAATGAAGATTCGCCTGGCACAGCACCTGTATTGAGGCCAGGGGGCA 1043
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 842 GGACTCTAGCTCTGAATGAAGATTCGCCTGGCACAGCACCTGTCTTAAGGCCGGGGGGCA 901
Query 1044 TCAGTTTGAAAGATAATCTATTGATTGATGCTCTTCGTGCAAAGACTCAGGGTAAGAATG 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TCAGTTTGAAAGATAATCTATTGATTGATGCTCTTCGTGCAAAGACTCAGGGTAAGAATG 961
Query 1104 TTGGGATCCCAGTGTGTGAAGGAGCTGTTAACACAAAATGCCCATGGAACGCAGCAGAGC 1163
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TTGGCATCCCAGTGTGTGAAGGAGCTGTTAACACAAAATGCCCATGGAACGCAGCAGAGC 1021
Query 1164 TATTTCATCTTGAACTGGTTGAAGGCGAAACAATTAGAGAGTGGCTCTTCTTTGACAAAC 1223
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1022 TATTTCATCTTGAACTGGTTGAAGGCGAAACGATTAGAGAGTGGCTCTTCTTTGACAAAC 1081
Query 1224 CTAGAAGAGCATATGATAGCGGAAACCGAAAGCAAAGATCACTTCCAGATTACAGTGGAA 1283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CTAGAAGAGCATATGATAGCGGAAACCGAAAGCAAAGATCACTTCCAGATTACAGTGGAC 1141
Query 1284 GAGGTTGGCATGAATCAAGAAAACAACTGATGAAGGAACAAGAAGGCCAGAAGAGATCTT 1343
||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 1142 GAGGTTGGCATGAATCAAGAAAAGTACCGATGAAGGAACAAGAAGGCCAGAAGAGATCAT 1201
Query 1344 ACTATATGGATCCACAACCTCCAGGTCCCTTTGAGTGGCATCTCTTTGAATACCAAATCA 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 ACTATATGGATCCACAACCTCCAGGTCCCTTTGAGTGGCATCTCTTTGAATACCAAATCA 1261
Query 1404 ATGAATCTGACGCATGTGCGTTATATCGCCTAGAACTTAAAGTAGGAAATGGAAAGAAGA 1463
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1262 ATGAATCTGACGCATGTGCGTTATATCGGCTAGAACTTAAAGTAGGAAATGGAAAGAAGA 1321
Query 1464 GTCCTAAGGGAAAGATTTCAAAAGACCCTCTGGCTGATCTGCAGAAGAAGATGGGACAGT 1523
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1322 GTCCTAAGGGAAAGATTTCAAAAGACCCTCTAGCTGATCTGCAGAAGAAGATGGGACAGT 1381
Query 1524 TTAAAGTGGCTTCAGACAAACCCTCTCCTCCAACCAAAGGTCGTAAGGAGTGAAGTTAGC 1583
|||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1382 TTAAAGTGGCGTCAGACAAACCCTCTCCTCCAACCAAAGGTCGTAAGGATTTAAGTTAGC 1441
Query 1584 TATTGGTAATCTAACTCAAGACTCCTGCAACAATAGCTCCAAGTTGTCTCCAGCATTCTA 1643
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TATTGGCAATCTAACTCAAGACTCCTGCAACAATAGCTCCAAGTTGTCTCCAGCATTCTA 1501
Query 1644 CAAAAGAGCCATCGCCACCTCTGTTTTCtttttttttttCTTTCTGACTGTATTATGAAG 1703
|||||||||||||| || ||||||||| ||||| ||||||||||||||||||| |
Sbjct 1502 CAAAAGAGCCATCGTCATCTCTGTTTT-TTTTT------CTTTCTGACTGTATTATGACG 1554
Query 1704 AGATAGGATC-T-TT-GATGTGTTGTGTTAATATGGACAAGTCTGGTCTTTGCCCTTTTT 1760
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGATAGGATCATCTTTGATGTGTTGTGTTAATATGGACAAGTCTGGTCTTTGCCCTTTTT 1614
Query 1761 CTTGATAGAATC-G-----TA-GATGGGTTT-GTAAATTTTTGCATTTTATTTTTCTCCT 1812
|||||||||||| | || ||||||||| ||||||||||||||||||||||||||||
Sbjct 1615 CTTGATAGAATCTGAGAACTAAGATGGGTTTTGTAAATTTTTGCATTTTATTTTTCTCCT 1674
Query 1813 TTAAAACCACAAGGATTTT 1831
|||||||| |||||||||
Sbjct 1675 CTAAAACCATAAGGATTTT 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68867162960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5