BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42410.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935110 jgi|Araly1|935110|scaffold_403098.1 1044 0.0
Ahg887298 jgi|Araly1|887298|Al_scaffold_0409_3 1044 0.0
> Ahg935110 jgi|Araly1|935110|scaffold_403098.1
Length=691
Score = 1044 bits (565), Expect = 0.0
Identities = 621/648 (96%), Gaps = 3/648 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGAACACATTTGGCAAGTTTTAGTAACAGAGACAAAACCCAAGAAGAAGAAGGA 60
|||||||| ||||||||||||||||| || |||| | ||||||||||||||||||||| |
Sbjct 24 ATGAAGAGGACACATTTGGCAAGTTTCAGCAACACAAACAAAACCCAAGAAGAAGAAGAA 83
Query 61 GAAGACGGT-A-A-TGGTGACAACAGAGTCATCATGAATCACTACAAGAATTACGAAGCT 117
|||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 GAAGACACTAATATTGGTGACAACAGAGTCATCATGAATCACTACAAGAATTACGAAGCT 143
Query 118 GGGCTGATCCCATGGCCTCCCAAGAATTACACTTGCAGCTTCTGCAGGAGAGAGTTCAGA 177
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 144 GGGCTGATCCCATGGCCTCCCAAGAACTACACTTGCAGCTTCTGCAGGAGAGAGTTTAGA 203
Query 178 TCTGCTCAAGCACTTGGAGGCCACATGAATGTTCATAGAAGAGACAGAGCAAAACTCAGG 237
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 204 TCTGCTCAAGCACTTGGAGGCCACATGAATGTCCATAGAAGAGACAGAGCAAAACTCAGA 263
Query 238 CAGATCCCTTCTTGGCTCTTCGAACCTCACCACCACACACCTATTGCAAACCCTAACCCT 297
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 264 CAGATCCCTTCTTGGCTCTTCGAACCTCACCACCACATACCTATTGGAAACCCTAACCCT 323
Query 298 AATTTTAGCTCTTCTTCTTCCTCTTCAACAACAACAGCTCATCTTGAGCCTTCCCTAACC 357
||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||
Sbjct 324 AATTTTAGCTCTTCTTCTTCCTCTTTAACAACACCAGCTCACCTTGAGCCTTCCTTAACC 383
Query 358 AACCAGAGATCCAAAACCACTCCTTTTCCTTCTGCCCGGTTTGATCTTTTGGACAGTACT 417
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 384 AACCAGAGATCCAAAACAACTACTTTTCCTTCTGCCCGGTTTGATCTTTTGGACAGTACT 443
Query 418 ACTAGCTATGGAGGTTTGATGATGGACAGAGAGAAGAACAAGAGCAATGTATGTAGCAGA 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 444 ACTAGCTATGGAGGTTTGATGGTGGACAGAGAGAAGAACAAGAGCAATGTATGTAGCAGA 503
Query 478 GAGATCAAGAAAAGTGCCATCGATGCATGTCATTCAGTAAGATGTGAGATAAGCCGTGGG 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GAGATCAAGAAGAGTGCCATCGATGCATGTCATTCAGTAAGATGTGAGATAAGCCGTGGG 563
Query 538 GATCTGATGAATAAGAAAGATGATCAAGTCATGGGGTTGGAGCTTGGGATGAGTTTGAGG 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 564 GATCTGATGAATAAGAAAGATGATCAAGTCATGGGGTTGGAGCTTGGGATGAGTTTGAAG 623
Query 598 AATCCCAACCAAGTTCTTGATTTGGAGCTTCGACTAGGCTACCTCTAA 645
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 624 AATCCCAAACAAGTTCTTGATTTGGAGCTTCGACTAGGCTACCTCTAA 671
> Ahg887298 jgi|Araly1|887298|Al_scaffold_0409_3
Length=648
Score = 1044 bits (565), Expect = 0.0
Identities = 621/648 (96%), Gaps = 3/648 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGAACACATTTGGCAAGTTTTAGTAACAGAGACAAAACCCAAGAAGAAGAAGGA 60
|||||||| ||||||||||||||||| || |||| | ||||||||||||||||||||| |
Sbjct 1 ATGAAGAGGACACATTTGGCAAGTTTCAGCAACACAAACAAAACCCAAGAAGAAGAAGAA 60
Query 61 GAAGACGGT-A-A-TGGTGACAACAGAGTCATCATGAATCACTACAAGAATTACGAAGCT 117
|||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACACTAATATTGGTGACAACAGAGTCATCATGAATCACTACAAGAATTACGAAGCT 120
Query 118 GGGCTGATCCCATGGCCTCCCAAGAATTACACTTGCAGCTTCTGCAGGAGAGAGTTCAGA 177
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 121 GGGCTGATCCCATGGCCTCCCAAGAACTACACTTGCAGCTTCTGCAGGAGAGAGTTTAGA 180
Query 178 TCTGCTCAAGCACTTGGAGGCCACATGAATGTTCATAGAAGAGACAGAGCAAAACTCAGG 237
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TCTGCTCAAGCACTTGGAGGCCACATGAATGTCCATAGAAGAGACAGAGCAAAACTCAGA 240
Query 238 CAGATCCCTTCTTGGCTCTTCGAACCTCACCACCACACACCTATTGCAAACCCTAACCCT 297
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 241 CAGATCCCTTCTTGGCTCTTCGAACCTCACCACCACATACCTATTGGAAACCCTAACCCT 300
Query 298 AATTTTAGCTCTTCTTCTTCCTCTTCAACAACAACAGCTCATCTTGAGCCTTCCCTAACC 357
||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||
Sbjct 301 AATTTTAGCTCTTCTTCTTCCTCTTTAACAACACCAGCTCACCTTGAGCCTTCCTTAACC 360
Query 358 AACCAGAGATCCAAAACCACTCCTTTTCCTTCTGCCCGGTTTGATCTTTTGGACAGTACT 417
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACCAGAGATCCAAAACAACTACTTTTCCTTCTGCCCGGTTTGATCTTTTGGACAGTACT 420
Query 418 ACTAGCTATGGAGGTTTGATGATGGACAGAGAGAAGAACAAGAGCAATGTATGTAGCAGA 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTAGCTATGGAGGTTTGATGGTGGACAGAGAGAAGAACAAGAGCAATGTATGTAGCAGA 480
Query 478 GAGATCAAGAAAAGTGCCATCGATGCATGTCATTCAGTAAGATGTGAGATAAGCCGTGGG 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGATCAAGAAGAGTGCCATCGATGCATGTCATTCAGTAAGATGTGAGATAAGCCGTGGG 540
Query 538 GATCTGATGAATAAGAAAGATGATCAAGTCATGGGGTTGGAGCTTGGGATGAGTTTGAGG 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 GATCTGATGAATAAGAAAGATGATCAAGTCATGGGGTTGGAGCTTGGGATGAGTTTGAAG 600
Query 598 AATCCCAACCAAGTTCTTGATTTGGAGCTTCGACTAGGCTACCTCTAA 645
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCCCAAACAAGTTCTTGATTTGGAGCTTCGACTAGGCTACCTCTAA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5