BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42430.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935111 jgi|Araly1|935111|scaffold_403099.1 1273 0.0
> Ahg935111 jgi|Araly1|935111|scaffold_403099.1
Length=778
Score = 1273 bits (689), Expect = 0.0
Identities = 747/775 (96%), Gaps = 3/775 (0%)
Strand=Plus/Plus
Query 209 TTTGTTCGTTTCGCCGATGGCATCTTCCGGTAACGGTACAACGGCGGGGACAGGTTCACC 268
|||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 7 TTTGTTTGTTTCGCCGATGGCATCTTCTGGTAACGGTACAACGCCGGGAACAGGTTCACC 66
Query 269 ATGCGGTGCATGCAAGTTCTTGAGGAGGAAGTGCGCATCCGATTGTATATTTGCACCGTA 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GTGCGGTGCATGCAAGTTCTTGAGGAGGAAGTGCGCATCCGATTGTATATTTGCACCGTA 126
Query 329 CTTCTCATCGGAGCAAGGAGCAGCAAGATTCGCAGCTATTCACAAGGTGTTTGGAGCAAG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 127 CTTCTCATCGGAGCAAGGAGCAGCAAGATTCGCAGCTATTCACAAGGTGTTTGGAGCCAG 186
Query 389 CAACGTTTCTAAGCTCTTGCTTAATGTTCCAATCCATGATCGATGTGAAGCTGTCGTCAC 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CAACGTTTCTAAGCTCTTGCTTAATGTTCCAATCCATGATCGATGTGAAGCTGTCGTCAC 246
Query 449 CATCGCCTACGAAGCTCAGGCTCGTCTTCATGACCCTGTTTATGGATGTGTCTCTCATAT 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CATCGCCTACGAAGCTCAGGCTCGTCTTCATGACCCTGTTTATGGATGTGTCTCTCATAT 306
Query 509 CTTTGCCCTCCAACAACAGGTGGCTTTCTTGCAATCACAAGTCATGCAAATGAAGGCACA 568
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 307 CTTTGCCCTCCAACAACAGGTGGCTTACTTGCAAGGACAAGTCATGCAAATGAAGGCACA 366
Query 569 GATAGCTGGCCACCAGACGTCAGCCGCCGGAGATCTAAGACACAGCTCGGAAAGTACCAA 628
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 367 GATCGCCGGCCACCAGACGTCAGCCGCCGGAGATCTAAGACACAGCTCGGAGAGTACTAA 426
Query 629 CCAGTTTATGACGTGGCAACAAACTAGTGTCTCTCCGATCGGTAGTGCATACTCAACACC 688
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 427 CCAGTTTATGACGTGGCAACAAACTAGTGGCTCTCCGATCGGTAGTGCATACTCAACACC 486
Query 689 GTATAACCATCATCAACCTTACTACGGTCATGTAAACCCTAACAATCCGGTCTCGCCACA 748
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTATAACCAGCATCAGCCTTATTACGGTCATGTAAACCCTAACAATCCGGTCTCGCCACA 546
Query 749 GAGCTCGCTAGAAGAATCTTTCAGCAACACGAGCAGTGACGTCACCACAACAGCCAACGT 808
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 547 GAGCTCGCTAGATGAATCTTTCAGCAACACGAGCAGTGACGTCACCACAACAGCTAACGT 606
Query 809 GCGAGAGACTCATCATCAAACCGGAGGAGGAGTATACGGTCACGATGGAATAGGGTTTCA 868
||||||||||||||| || |||||| ||| ||||||||||||||||| ||||||||||
Sbjct 607 GCGAGAGACTCATCA--AA-CCGGAGTAGGCGTATACGGTCACGATGGTTTAGGGTTTCA 663
Query 869 CGAAGGATATCCTAACAAGAAGAGATCAGTGAGTTATTGTAGTAGCGATTTAGGTGAGCT 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CGAAGGATATCCTAACAAGAAGAGATCAGTGAGTTATTGTAGTAGCGATTTAGGTGAGCT 723
Query 929 TCAGGCTTTGGCTCTTAGAATGATGAAGAACTAAGATAAGTTGGTAAGTTATGTA 983
||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 724 TCAGGCTTTGGCTCTTAGAATGATGAAGAACTAAGATAAGTTGGTAACTTGTGTA 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5