BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42440.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346041 jgi|Araly1|346041|fgenesh1_pg.C_scaffold_4002383 1050 0.0
Ahg486271 jgi|Araly1|486271|fgenesh2_kg.5__2263__AT3G58190.1 401 4e-111
> Ahg346041 jgi|Araly1|346041|fgenesh1_pg.C_scaffold_4002383
Length=738
Score = 1050 bits (568), Expect = 0.0
Identities = 687/743 (92%), Gaps = 13/743 (2%)
Strand=Plus/Plus
Query 68 ATGACTGGCTCTGGCTCTCCTTGTGGAGCTTGTAAGTTTTTAAGAAGGAGATGTGTAAAA 127
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 ATGACTGGCTCTGGCTCTCCTTGTGGAGCTTGTAAATTCTTAAGAAGGAGATGTGTAAAA 60
Query 128 GGATGTGTGTTTGCCCCATACTTTTGCCATGAACAAGGAGCTTCCCATTTTGCAGCAATT 187
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 GGATGTGTGTTTGCCCCATACTTTTGCCATGAACAAGGAGCTTCACATTTTGCAGCCATT 120
Query 188 CACCAAGTGTTTGGAGCCAGCAATGCTTCTAAATTGCTCTCTCATCTTCCCATGGAGGAT 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 CACCAAGTGTTTGGAGCCAGCAATGCTTCTAAATTGCTCTCTCATCTTCCCATGGAAGAT 180
Query 248 CGACGTGAAGCCGCTACTACAATCTATTATGAAGCTCAAGCTCGCCGTCAAGACCCCATC 307
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 181 CGACGTGAAGCCGCTACTACAATCTATTATGAAGCTCAAGCTCGTCGTCAAGATCCCATT 240
Query 308 TATGGCTGCGTTTCTCATATCTTTTCCCTCCAACAACAAGTTGTGAATTTACAAACACAG 367
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 241 TATGGCTGCGTATCTCATATCTTCTCCCTCCAACAACATGTTGTGAATTTACAAACACAG 300
Query 368 CTAGAGATTCTAAAGCAACAAGCAACACAAAGCATGATGGCTATTGATTCTCCCTCCATA 427
||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 301 CTAGAGATTCTAAAGCAACAAGCAAAACAAAGCATGATGGCTACTGATTCTCCATCCATA 360
Query 428 GAAAACCCTAATTACTATCAAGACACTAAGCCTCAATATCTTCAAGAATCTCATGATCTC 487
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAAACCCTAATTATTATCAAGACACTAAGCCTCAATATCTTCAAGAATCTCATGATCTC 420
Query 488 CATCATCATCATC-T-A-ACCACTTCGAATTGTCAAACGGAGCAAAACTCTGATCTTAAG 544
|||||||| |||| | | ||||||||| ||| ||||||||||||| ||| |||||| |||
Sbjct 421 CATCATCAGCATCATCAGACCACTTCGGATTATCAAACGGAGCAACACTGTGATCTAAAG 480
Query 545 AACATCATGACGTCGTGCTACCACCA-AATGGAAATCGAAACGACGCCGTTCA-CAGGAG 602
|| ||||||||||||||||||||||| || | ||| || |||| | |||||| | ||||
Sbjct 481 AATATCATGACGTCGTGCTACCACCAGAACG-AAACCGGGACGAGGTCGTTCATC-GGAG 538
Query 603 CTGGCGGAGATACCATGGCGGGGAGTTACTACTACAACTCCTCTAGTGGCTGCAGCGAAG 662
||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 539 CTGGCGGAGATACCACAGCGGCGAGTTACTACTACAACTCCTCTAGTGGCTACAGCGAAG 598
Query 663 AACTTAAATCGGTCTCCACCAACGGCGAATTTTCCAAATACTCTGAATTGGATCAGCA-C 721
|||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| || |
Sbjct 599 AACTTAAATCGGTCTCGACCATCGGCGAATTTTCCAAATACTCTGAAGTGGATCAACAAC 658
Query 722 --TTGACGAACACTTTTAATCAGTATCGTCATGGCGGCAATAATCTGATATCCGAGAGTT 779
|||| | |||||||||||| |||| | ||||||||||| ||||| ||||||||||||
Sbjct 659 ACTTGA--A-CACTTTTAATCAATATCATGATGGCGGCAATGATCTGCTATCCGAGAGTT 715
Query 780 TAGGGTACATCACGTATTCTTGA 802
|||||||||| |||||||| |||
Sbjct 716 TAGGGTACATTACGTATTCATGA 738
> Ahg486271 jgi|Araly1|486271|fgenesh2_kg.5__2263__AT3G58190.1
Length=904
Score = 401 bits (217), Expect = 4e-111
Identities = 334/389 (86%), Gaps = 13/389 (3%)
Strand=Plus/Plus
Query 75 GCTCTGGCTCTCCTTGTGGAGCTTGTAAGTT-TTTAAGAAGGAGATGTGTAAAAGGATGT 133
||||||||||||||||||| ||||||||||| || || |||| ||||| ||| ||||||
Sbjct 72 GCTCTGGCTCTCCTTGTGGTGCTTGTAAGTTCCTT-AGGAGGAAATGTGCAAAGGGATGT 130
Query 134 GTGTTTGCCCCATACTTTTGCCATGAACAAGGAGCTTCCCATTTTGCAGCAATTCACCAA 193
|||||||| ||||||||||| ||||||||||||||||| || |||||||| || || |||
Sbjct 131 GTGTTTGCTCCATACTTTTGTCATGAACAAGGAGCTTCACACTTTGCAGCCATCCA-CAA 189
Query 194 -GTGTTTGGAGCCAGCAATGCTTCTAAATTGCTCTCTCATCTTCCCATGGAG-GATCGAC 251
|| |||||||| |||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 190 GGTCTTTGGAGCTAGCAATGCTTCTAAGTTGCTCTCTCATCTTCCCAT-TAGCGATCG-C 247
Query 252 -GTGAAGCCGCTACTACAATCTATTATGAAGCTCAAGCTCGCCGTCAAGACCCCATCTAT 310
|||||||||||| |||||||| |||||||||||||||| | | |||||| |||||||||
Sbjct 248 TGTGAAGCCGCTATTACAATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCCATCTAT 307
Query 311 GGCTGCGTTTCTCATATCTTTTCCCTCCAACAACAAGTTGTGAATTTACAAACACAGCTA 370
||||||||||||||||||||| | ||||| ||||| |||| |||||||||| || | ||
Sbjct 308 GGCTGCGTTTCTCATATCTTTGCTCTCCAGCAACAGGTTGCGAATTTACAAGCAGAACTT 367
Query 371 GAGATTCTAAAGCAACAAGCAACACAAAGCATGATGGCTATTGATTCTCCCTCCAT-AGA 429
||||||||||||||||||||| ||||||||||||| | |||||| || | || |||
Sbjct 368 GAGATTCTAAAGCAACAAGCAGCACAAAGCATGATTTTTGCTGATTCACCAAC-ATCAGA 426
Query 430 AAACCCTAAT--T-ACTATCAAGACACTA 455
|||||||||| | ||||| ||||||||
Sbjct 427 AAACCCTAATAGTTACTATGGAGACACTA 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5