BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42450.1
Length=1978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935117 jgi|Araly1|935117|scaffold_403105.1 2669 0.0
> Ahg935117 jgi|Araly1|935117|scaffold_403105.1
Length=1690
Score = 2669 bits (1445), Expect = 0.0
Identities = 1604/1682 (95%), Gaps = 5/1682 (0%)
Strand=Plus/Plus
Query 146 AGCCAATTCTGAGCTCGCCAATGGCTAACAGAGCATTGAACCGGCTTCTACGGAATTTCT 205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AGCCAATTCTGAGCTCGCCAATGGCTAACAGAGCATTGAACCGGCTTCTACGGAATTTTT 60
Query 206 TTGTAGAAAGTTCACCATTCAGGAAGAGAAGTGGATTGTATCAAGGAGTTGTTTACAATG 265
|||||||| ||||||| |||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 61 TTGTAGAAGGTTCACCGTTCAAGAAGAGACGTGGATTGTATGAAGGAGTTGTTTACAATG 120
Query 266 TAATCA-AACGGTTTCAGTCTCATTTATCAGAGTCCGGGAAGGTAGAAAAGGAGTTAGAA 324
|||||| || | ||||| || |||||||||||||| || |||||||||||||||||||||
Sbjct 121 TAATCAGAA-GATTTCAATCGCATTTATCAGAGTCTGGTAAGGTAGAAAAGGAGTTAGAA 179
Query 325 GAGCAGGAGGCAGAGAAGAGAAGGCCTAGTAGTGTCACTTCTTCGAGGTCCGGATTAGAG 384
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 180 GAGCAGGAGGCAGAGAAGAGAAAGCCTAGTAGTGTCACTTCTTTGAGGTCCGGATTAGAG 239
Query 385 AAAAGAAGACAATTTGAATCAGGAATCGACAATGATAGCTCTAGTGATGAAGATACAGGT 444
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 AATAGAAGACAATTTGAATCAGGAATCGACTGTGATAGCTCTAGTGATGAAGATACAGGT 299
Query 445 GATGGAAAGTGGAAACTAGACCTAGCTTGGCTCACTAAAGCACTTGAGCCAGCTATGCAA 504
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATGGAAAGTGGAAACTGGACTTAGCTTGGCTCACTAAAGCACTTGAGCCAGCTATGCAA 359
Query 505 TTACGTAGATGGGCTCTTCCAACAGGAGAGAAGTCACTGCCTGGTAGTCGATCTCTGTCT 564
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 360 TTGCGTAGATGGGCTCTTCCAACAGGAGAGAAGTCAATGCCTGGTAGTCGATCTTTGTCT 419
Query 565 GAGATAATTGCTAGTATTCAGAGGAGTAGGCTTGGGATTGAAGGTTGGACTTTTGGTGAT 624
||||| |||||||||||||| ||||||| ||| || ||||||||||||||||||||||||
Sbjct 420 GAGATCATTGCTAGTATTCAAAGGAGTAAGCTCGGTATTGAAGGTTGGACTTTTGGTGAT 479
Query 625 CTTACTATTGGTCTCTATCTTATATACCTTAGACAAGCATCCTTGTCTCCATTTGAGGAC 684
||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||||||
Sbjct 480 CTTACAATTGGTCTCTATCTTATATACCTTCGACAAGCATCCTTGTGTCCGTTTGAGGAC 539
Query 685 GTCAAGGGCGTAGAAGTTGTTTCAGAGTCTACAGTTTATGATCTGATATATAATGCGGAG 744
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 540 GTCAAGGGCGTAGAAGTTGTTTCAGAGTCTACGGTTTATGATCTGATATACAATGCCGAG 599
Query 745 TTAGCAAAAGGTTGTTACAGGGATAGTGTGAGTGGTCTTGCAAAGAACACCATGCTTCGA 804
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 600 TTAGCAAAAGGTTGTTACAGGGATAGTGTGAGTGGTCTTGCAAAGAACACGATGCTTCGA 659
Query 805 GAGAATAACATTCTTAAATTTGTGAAAGATTCAAGTGTTATGAGGCCTGGATACTACATA 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGAATAACATTCTTAAATTTGTGAAAGATTCAAGTGTTATGAGGCCTGGATACTACATA 719
Query 865 GGAGTTGATCATCGAAGGAAACTTGTTGTCTTTGGAATACGCGGGACACATACAATTTAC 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGAGTTGATCATCGAAGGAAACTTGTTGTCTTTGGAATACGCGGGACACATACAATTTAC 779
Query 925 GATCTTATCACTGACATTGTCTCTTCAAGCGATGAAGAAGTCACTTTTGAAGGCTACTCA 984
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 780 GATCTTATCACTGACATTGTCTCTTCGAGCGATGACGAAGTCACTTTTGAAGGCTACTCA 839
Query 985 ACACACTTTGGAACTGCTGAAGCTGCACGATGGTTCCTTAACCACGAATTGCAAACTATA 1044
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 ACACACTTTGGAACCGCTGAAGCTGCACGATGGTTCCTTAATCACGAATTGCAAACTATA 899
Query 1045 AGAAGATGCTTAGCGAAATACGAGGGATACAAGCTACGGCTTGTTGGTCATTCTCTCGGC 1104
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 AGAAGATGCTTAGCGAAATACGAGGGATACAAGCTAAGGCTTGTTGGTCATTCTCTCGGC 959
Query 1105 GGTGCTATAGCCTCCTTAATGGCGATAATGCTCAAGAAAATGCCAAGGGAGGAATTGGGA 1164
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 960 GGTGCTATAGCCTCGTTAATGGCGATAATGCTCAGGAAAATGCCAAGGGAGGAATTGGGA 1019
Query 1165 TTCGATGCTGAAATTATTTCAGCCGTTGGGTATGCGACACCTCCTTGTGTTTCCAAAGAG 1224
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 TTCGATGCTGAAAGTATTTCAGCCGTTGGGTATGCGACACCTCCTTGTGTTTCTAAAGAG 1079
Query 1225 CTTGCAGAGAATTGCTCTGAGTTTGTAACAACTATTGTAATGCAGGACGACATTATACCT 1284
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1080 CTTGCAGAGAATTGCTCTGATTTTGTAACAACTATTGTAATGCAGGACGATATTATACCT 1139
Query 1285 AGACTCAGTGCAGCTTCTCTAGCGAGATTGAGGAATGAAATCCTTCAGACAGATTGGACA 1344
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1140 AGACTCAGTGCAGCTTCTCTAGCGAGATTAAGGAATGAAATCCTTCAGACCGATTGGACA 1199
Query 1345 AGTGTAATTGAGAAGGAAGAATGGAAGAACGTTTTGGATTTGGTAACAAACGCAAAACAA 1404
||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1200 AGTATAATTGAGAAGGAAGAATGGAAGAACATAATGGATTTGGTAACAAACGCAAAACAA 1259
Query 1405 GTTGTCACCTCTGTGCAAGACGTAGCTAGAAAAGTTTCTGATTATGCAAACTTCGGAAAC 1464
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1260 GTTGTCACCTCTGTGCAAGACGTAGCTCGAAAAGTTTCTGATTATGCAAACTTCGGAAAC 1319
Query 1465 AAAAAAGAAGTTCCAGAAATCCCGTCATCCAAGAACAACCAGTCTGGGA-TATTAATCTC 1523
| |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1320 AGAAAAGAAGTTCCTGAAATCCCGTCATCCAAGAACAACCAGTCTGGGACT-TTAATCTC 1378
Query 1524 TGACTCTACTACTAAAGATGTTGTGAAATTGCCAGAAGAGTTATATGTACCGGGTGCAGT 1583
||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1379 TGAATCTACCACTAAAGATGTTGTTAAATTGCCAGAAGAGTTATATGTACCGGGCGCAGT 1438
Query 1584 TTACTATCTGATGAGGAGCCTAAGAGGAACCCCGAAAAGCTCAGCAGGAAAACAAGTAGA 1643
||||||||| ||||||| ||||||||||| |||||||| | |||||||||||||||||||
Sbjct 1439 TTACTATCTAATGAGGAACCTAAGAGGAAACCCGAAAATCGCAGCAGGAAAACAAGTAGA 1498
Query 1644 GTACTATAGTCTATGGAAGAGAGATCCAGGACAACATTTTCAGAGGATACTTCTCTCCGG 1703
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1499 ATACTATAGTCTATGGAAGAGAGATCCAGGACAACATTTTCAGAGGATACTTCTCTCAGG 1558
Query 1704 TAATTTCATTACAGACCATAAATGTGATAGCCATTACTACGCTCTGCGAGATGTGCTCAA 1763
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1559 TAATTTCATTACAGACCATAAATGCGATAGCCATTACTACGCTCTGCGAGATGTGCTCAA 1618
Query 1764 AGGATTTCCCAGTTTCATCAACGAAAGCATCTTTAAGAAGTGAAATAC-TGAAATGGAAT 1822
||||||||||||||||||| |||||||||||||||||||| || || ||||| ||||
Sbjct 1619 AGGATTTCCCAGTTTCATCGACGAAAGCATCTTTAAGAAGAGATGTAAGTGAAACAGAAT 1678
Query 1823 CT 1824
||
Sbjct 1679 CT 1680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74352158240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5