BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42460.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902240 jgi|Araly1|902240|Al_scaffold_0004_2890 1155 0.0
Ahg924972 jgi|Araly1|924972|scaffold_200533.1 492 3e-138
> Ahg902240 jgi|Araly1|902240|Al_scaffold_0004_2890
Length=927
Score = 1155 bits (625), Expect = 0.0
Identities = 733/785 (93%), Gaps = 8/785 (1%)
Strand=Plus/Plus
Query 50 ATGGAGATAGATTTGCAGAAG-ACTTTTACCTGGAAGATAGAAAATTTCTCCGGAAGGAA 108
|||||||| ||||||||| || ||||||| ||||||||||||||| ||||||| ||||||
Sbjct 1 ATGGAGATTGATTTGCAG-AGTACTTTTAGCTGGAAGATAGAAAACTTCTCCGAAAGGAA 59
Query 109 ATTTCCAATAACGTCTACTGTGTTCTCAAGCGGTGGCTGCGAATGCTATGTTCTAATTCG 168
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 60 ATTTCCAATAACGTCTACTGCGTTCTCAAGCGGTGGCTGCGAATGGTATGTTCTAATTCA 119
Query 169 TCCCAAGGGAGATGGCTTTGAAGATTACTTATCTCTGTATCTATGCGTTGGGAACCCTAA 228
||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 120 TCCCAAGGGAGATGGCTTTGATGATTACTTGTCTCTGTATCTATGCGTTGCGAACCCTAA 179
Query 229 ATCATTGCAACCTGGATGGAAAAGGCGAGCCAGTTTGCACTTCATTGTATTGAATCAATC 288
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 180 ATCACTGCAACCTGGATGGAAAAGGCGAGCCAGTTTGAACTTCATTATATTGAATCAATC 239
Query 289 AGGCAAAGAGGTCCATAGAACATCTGAAAGATATGGCTTGTTTGGTC-CTGAGATCCCTG 347
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 240 AGGCAAAGAGGTCCATAGAACATCTGAAAGATATGGCTTGTTTGG-CGCTGAGATCCCTG 298
Query 348 GCTGGGGTTTTCGAACGGCGTTGCCTCTTACCAAGTTACAAGATAGAGAGTTGTTGGAGA 407
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 299 GCTGGGGTTTTCGAACGGCGTTGCCTCTTACCAAGTTACAGGATAAAGAGTTGTTAGAGA 358
Query 408 ACAACACTCTCTTCATTGAAGTCTACATTAAAGTTACTGAAGTTGTTCATGAAGGGGATG 467
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 ACAACACTCTCATCATTGAAGTCTACATTAAAGTTACTGAAGTTGTTCATGAAGGAGATG 418
Query 468 AAACAAGGAAGGATATGTTAGATTTCAAAGGTTTCAATGTTCTTTCTTCTCAAATTGCTT 527
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 419 AAACTAGGAAGGATATGTTAGATTTCAGAGGTTTCAATGTTCTTTCTTCTCAAATTACTT 478
Query 528 CGGTGAGCC-CGATATTCGCTAAGTACCCAAAATTTGCGG-ATGATATCAAACCAACAAG 585
| ||||||| | || || || ||||||||||| ||||||| | ||||||||||||| |||
Sbjct 479 CAGTGAGCCAC-ATTTTTGCCAAGTACCCAAACTTTGCGGCA-GATATCAAACCAAAAAG 536
Query 586 CAAAGCGGTGAAGACAGTATACCTGAAGATTCTCCTCGGCCTTATCAAGACAGTAAACAA 645
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 537 CAAAGCCGTGAAGACAGCATACCTGAAGATTCTCCTCGGCCTTATCAAGACAGCAAACAA 596
Query 646 GCCTCCAGAGATCTTTTCAGAGACTGAACTAATCAAGGCTTATAGCAGCTTAATTGATCT 705
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 597 GCCTCCAGAGAGCTTCTCAGAGACTGAACTAATCAAGGCTTATAGCAGTTTAATTGATCT 656
Query 706 AATGGAAGTGGGCTTTAGGGTGAAGTGGTTGAAGTCAAAGCTTGATGAGATTTCCTTGGC 765
||||||||||||||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct 657 AATGGAAGTGGGCTTTAAGCTGGACTGGTTGAAGTCAAAGCTTGATGAGGTTTCCTTGGA 716
Query 766 GAGGAAGAAAAAAGTTGATGCTGATGCGGCTCGGGTCCAAGAGCTCGAGGGAAAGGTCAA 825
|||||||| ||||||||||||||| ||||||||||||||||| || |||| |||||||||
Sbjct 717 GAGGAAGATAAAAGTTGATGCTGACGCGGCTCGGGTCCAAGAACTTGAGGAAAAGGTCAA 776
Query 826 GAATC 830
|||||
Sbjct 777 GAATC 781
> Ahg924972 jgi|Araly1|924972|scaffold_200533.1
Length=905
Score = 492 bits (266), Expect = 3e-138
Identities = 405/472 (86%), Gaps = 9/472 (2%)
Strand=Plus/Plus
Query 908 CTTCAAGAGGAAGGATTTTTGGAGAATAACAAACTGATCATTAGAGTGGAAGTTAAAGTA 967
||| ||||||||||| | | |||||||||||||||||||||| ||| |||||||||| |
Sbjct 348 CTTAAAGAGGAAGGACATCTAGAGAATAACAAACTGATCATTAAAGTTGAAGTTAAAGCA 407
Query 968 GCTGAAGAAGGATATTTAACTGGGAAGGAGATGTTTGAAATCAAAGGTTTTGAAGTTCCT 1027
| ||||||| ||||| ||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 408 GGTGAAGAAAGATATGTAACTGGCAAGGAGATGTTTGAAATCGAAGGTTTTGAGGTTCCT 467
Query 1028 TCTTCTCAGGTTATTTCTGTGAGCCAGCTTTTCATGAAACACCCAGACATTGCAACTGGT 1087
|| ||||||| ||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 468 TCAAGTCAGGTTTTTTCTGTCAGCCAGCTTTTCATGAAACACCCAGACATTGCAAATGAT 527
Query 1088 TTCAAACTAAATGGCAAAGGTCTGAAGACAGCATACATGAGTCTTCTCCTCAGCCTCATC 1147
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 528 TTCAAACTAAATGGCAAAGGTCTGAAGACAGCATACATGAATATTGTCCTCAGCCTCATC 587
Query 1148 GAGACGTTGCGAAGGCCTCCACTGAGCTTTTCTGA-TATTGAGTTAAGCAAGGCTAACAG 1206
||||| ||| | ||||||||||| ||||||||||| | | ||| ||||||| | ||||
Sbjct 588 GAGACATTGTGCAGGCCTCCACTTAGCTTTTCTGAGTCT-GAGCTAAGCAACATTGACAG 646
Query 1207 C-ACGTTGAGGGAGCTGACAGAAGCGGGCTTTAAGCTGGATTGGTTAAAGAAAAAGCTTG 1265
| | |||||| ||||| | ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 647 CGA-GTTGAGCGAGCTAATAGAAGCGGGATTTAAGCTGGATTGGTTAAAGACAAAGCTTG 705
Query 1266 AGGAGGTTTCCTTGAAGAGGAAGAATGCAGTAGATGATGGTTCTCGT-GTCAAACAAGTG 1324
|||||||||||||| |||||||||| ||| | | |||| | |||| ||| || || ||
Sbjct 706 AGGAGGTTTCCTTGGAGAGGAAGAAAGCAATTGCTGATAAT-CTCGGAGTCCAAGAATTG 764
Query 1325 GAGGAACGCATCAA-AATTCTGAAGGTTGACATTGTCGGAACTCAAAGATGA 1375
||||||||| |||| ||| || || | || |||||||| ||||||| |||
Sbjct 765 GAGGAACGCGTCAAGAATA-TGGAGCT-GAGTTTGTCGGATCTCAAAGTTGA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5