BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42470.1
Length=2697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321927 jgi|Araly1|321927|fgenesh1_pm.C_scaffold_4001984 2435 0.0
Ahg346044 jgi|Araly1|346044|fgenesh1_pg.C_scaffold_4002386 270 3e-71
Ahg346045 jgi|Araly1|346045|fgenesh1_pg.C_scaffold_4002387 230 5e-59
Ahg924583 jgi|Araly1|924583|scaffold_200144.1 222 9e-57
Ahg902237 jgi|Araly1|902237|Al_scaffold_0004_2887 89.8 1e-16
> Ahg321927 jgi|Araly1|321927|fgenesh1_pm.C_scaffold_4001984
Length=2649
Score = 2435 bits (1318), Expect = 0.0
Identities = 1625/1768 (92%), Gaps = 42/1768 (2%)
Strand=Plus/Plus
Query 951 AGAAGCATGCAACTTGTTCTGCCCCGAGGTCTCAAACTGGTGTTTCTCTAAGACGTTGCC 1010
|||||||||||||||||||||| | ||||||||| || ||||||||||||||| |||||
Sbjct 903 AGAAGCATGCAACTTGTTCTGCGCTGAGGTCTCAGACCCGTGTTTCTCTAAGACATTGCC 962
Query 1011 TCTTAGCAAGCTTCAAGAAAAAGGGTTTCTGGAGAACAACAAACTAACCATTGAAGTCTA 1070
|||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 963 TCTTAGCACGCTTGAAGAAGAAGGGTTTCTGGAGAACAACAAACTAACCATTGAAATCTA 1022
Query 1071 CATTAAAGTTAAATCAGTGAGTTGGATCTTCGTGAAGCATCCAGACACTGCAGTACATTT 1130
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||
Sbjct 1023 CATTAAAGTTAAATCAGTGAGTTGGATCTTCGTGAAACACCCAGACATTGCAGTAGGTTT 1082
Query 1131 CTTACCAAAGAACAAACTGGTGAAGAAAGCACATATGAATACTCTCCTCTGCCTCATCAA 1190
| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |
Sbjct 1083 CAGACCAAAGAACAAACTGGTGAAGAAAGCATATATGAATATTCTCCTCGGCCTCATCGA 1142
Query 1191 GACACTGAGAAAGCCTCCTCTAAGTTTGTCTGAGACTGAGCTAAGCAATGCTTACAGCGA 1250
||||||| | |||||||||||||| |||||||||||||||||||| || ||| |||||||
Sbjct 1143 GACACTGCGCAAGCCTCCTCTAAGCTTGTCTGAGACTGAGCTAAGAAACGCTCACAGCGA 1202
Query 1251 GTTGACTAAGTTAACGGAAGTAG-GCTTCAAGCTAGACTGGTTAAAGTCAAAGCTTGAGA 1309
|||||||||||| | |||||| | |||||||||||||||||||||| |||||||||||
Sbjct 1203 GTTGACTAAGTTGATGGAAGT-GAGCTTCAAGCTAGACTGGTTAAAAACAAAGCTTGAGG 1261
Query 1310 AGGCTTCCTTGGAGAGGAAGAAATCAGTTTCTGATGGTTCTCAGATCTCCGCCTACGATT 1369
||| ||||||||||||||||||| ||||||||||||| | ||| | | || |
Sbjct 1262 AGGTTTCCTTGGAGAGGAAGAAAGCAGTTTCTGATGG---T----TCT----C-A-GA-T 1307
Query 1370 CAAGGATCAAACAAATCTCCAAGTATTTCGTCTGTTTTCTCCT-CC---CTCGAAGAACT 1425
|||||||||||||||| ||||| ||| ||||||| ||||| || ||| ||||| |
Sbjct 1308 --AGGATCAAACAAATCTAAAAGTAATTCCTCTGTTTCCTCCTCCCTAGCTCAAAGAAAT 1365
Query 1426 ACCAAAA-CCT--TAAAAAGTAAACAGATGGGGACGCAATTCCGCAAAGCTTTAACTTTG 1482
||||||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1366 ACCAAAACCCTAAAAAAAAATAAACAGATGGGAACGCAATTCCGCAAAGCTTTAACTTTG 1425
Query 1483 ACGGTAACCAACTTCTCCCAAAAGAGCTCTCCGATAAACTCTCCTCCTTTCCCAAGCGGT 1542
|||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||
Sbjct 1426 ACGGTAACCAACTTCTCCCAAAAGAGTTCTCCAATTAACTCTCCTCCGTTCCCTAGCGGT 1485
Query 1543 GGCTGCAATTGGTATATTAAATTTTATCCCAAGGGAAGTGCTGATGATAATTACTTGTCT 1602
|||||| |||||||||||||| ||||||| ||||| |||| |||||||||||||||||||
Sbjct 1486 GGCTGCGATTGGTATATTAAAGTTTATCCTAAGGGCAGTGTTGATGATAATTACTTGTCT 1545
Query 1603 TTGTTCCTGTCCCCTGATGATCCTAAATCACTTGGACTTAATTGGAAAAGGAGAGCTAAT 1662
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 CTGTTCCTGTCTCCTGATGATCCTAAATCACTTGGACTTAATTGGAAAAGGAGAGCTAAT 1605
Query 1663 TTTTACTTTGTTTTGCTGAATCAATCAGGCAAAGAACTTCATCGAACACCTGAAATAGGT 1722
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1606 TTTTACTTTGTTTTGCTGAATCAATCAGGCAAAGAACTTCATAGAACACCTGAAATAGGT 1665
Query 1723 GATCAA-TGGTTTTGTGATGACTCACTAAGCTGGGGTTTTCCACAGACATTGCCTCGAAA 1781
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1666 GATCAAGTG-TTTTGTGATGACTCACTAAGCTGGGGTTTTCCACAGACACTGCCTCGAAA 1724
Query 1782 AAAGCTTCTAGACAAAATCTTTCTTGATAACGACAGATTCAACATTGAAATCTATATTAA 1841
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1725 AAAGCTTCTAGACAAAATCTTTCTAGATAACGATAGATTCAACATTGAAATCTATATTAA 1784
Query 1842 AGTTATTGAAGTTGTTGAAGGATATCATATGTTTCCAGCTTCATTCACTAATAAGCTCTT 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 AGTTATTGAAGTTGTTGAAGGATATCATATGTTTCCAGCTTCATTCACTAATAAGCTCTT 1844
Query 1902 AAGAAGTTCCTTAGAGTATCCAGATAAGTCTGAGAAGGAAACTGTGGATATCAATGGTTT 1961
|||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1845 AAGAAGTTGCTTAGAGTATCCAGATAAGTCTGAGAAGGAAACTGTAGATGTCAATGGTTT 1904
Query 1962 CAAGGTTCTTTCTTCTCAGGTTACTTCAGTGAAGCGAATTTTCGAGGAGCATCCAGATAT 2021
| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1905 CCATGTTCTTTCCTCTCAGGTTACTTCAGTGAAGCAAATTTTCGAGGAGCATCCAGATAT 1964
Query 2022 AGCAGAAGATTTCAGATCAAAGAACCAAGTAGTGAAGACAGAATACATGAGTGTCCTTCT 2081
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1965 TGCAGAAGATTTCAGATCAAAGAACCAAGTAGTGAAGACAGAATACATGAATGTCCTTCT 2024
Query 2082 TAGGGTCATCGAGACAATGGCTAAACCGCCACAGAGTATTTCAGAGACTGAGCTAAGCAA 2141
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2025 TAGGGTCATCCAGACAATGGCTAAGCCGCCACAGAGTATCTCAGAGACTGAGCTAAGCAA 2084
Query 2142 CGTTCATAGCGAATTGACCGAGCTGACGGAAGTAGGTTTTAAGTTGGAGTGGTTGAAGGC 2201
|||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |
Sbjct 2085 CGTTCATAGCGAATTGACCGAGCTGATGGAAGTAGGTTTCAAGGTGGAGTGGTTGAAGAC 2144
Query 2202 AAAACTTGAGGAGGTTTGCGTGGCGTTTAAGAAAGCAAATGCTGATGGGTGTCGGATTCA 2261
||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 2145 AAAACTTGAGGAGGTTTCCGTGGAGTTGAAGAAAGCAAATGCTGATGGGTGTCGGATTCA 2204
Query 2262 ACAACTTGAGGAACACGTCAAGAATCTTGAGCAGACTGTGTCAGATCTCAAAGTTGAAAT 2321
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 2205 ACAACTTGAGGAACACGTCAAGAATCTTGAGCTGACTGTGTCAGATCTCAAAGCTGAACT 2264
Query 2322 GGACAAGGAGAAGGCTAAATCTACT-G-----CT---AAAGTTTTGTCGTTGGAGGATAC 2372
|||||| |||||||| ||||||||| | || ||| |||||||||||||||||||
Sbjct 2265 GGACAAAGAGAAGGCCAAATCTACTAGTGATACTGCTAAATTTTTGTCGTTGGAGGATAC 2324
Query 2373 ATTGTCTGATCTCAAAACTGAACTGGGTAAGGAGAAGGCAAAGAATGCTACTGCTACTGA 2432
|||||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||
Sbjct 2325 ATTGTCTGATCTCAAAACTGAACTCGTTAAGGAGAAGGCAAAAAATGCTAGTGCTACTGA 2384
Query 2433 TAAATTTTTGTTGTTGAAGGATACTTATTCTGATCTCAAAGTTGAACTGGAGAAGGAGAA 2492
||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 2385 TAAATTTTTGTTGTTGAAGGAGACTTATTGTGATCTCAAAGTTGAACTGGACAAGGAGAA 2444
Query 2493 AGCCAAATCTACTAGTGCTGCTGCTAAAGTTTTGTCGTTGAAAGAGGCTTTGTCTGATCT 2552
|| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 2445 GGCTAAATCTACTAGGGCTGCTGCTAAAGTTTTGTCATTGAAAGAGACTTTGTCTGATCT 2504
Query 2553 CAAAGTTGAACTGGATGATCAGAAGATAGTAAATTCTGCTAC-A--ACTGCTAATGTTTT 2609
|||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||
Sbjct 2505 CAAAGTTGAACTGGAT---CAGAAGATAGAAAATTCTGCTACTAGTACTGCTAATGTTTT 2561
Query 2610 ATCGTGGGAAGATGATGATGATTTATTTTCACATACTAACTGTTTAGGAATTCAGCAGAA 2669
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2562 GTCGTGGGAAGATGATGATGATTTATTTTCACATACTAACTGTCTAGGAATTCAGCAGAA 2621
Query 2670 GACAAATGCCTACAAAAGAATAAACTGA 2697
||||||||| ||||||||||||||||||
Sbjct 2622 GACAAATGCTTACAAAAGAATAAACTGA 2649
Score = 1262 bits (683), Expect = 0.0
Identities = 805/865 (93%), Gaps = 4/865 (0%)
Strand=Plus/Plus
Query 76 ATGGAGAATCATGAGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGA 135
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1 ATGGAGAATCATGAGCAGACGAGTTTCAGGTTTGAGATAGATAACTTCTTGGAGAAGCGA 60
Query 136 GATGCGATATCTCCT-ATATTCATAAGCGGCGGATGCGAATGGTTTATTAGGGTTTGGCA 194
|||| |||||||||| || ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 61 GATGTGATATCTCCTAAT-TTCATAAGCGGGGGATGCGAATGGTTTGTTAGGGTTTGGCA 119
Query 195 AATTGAAGATCACTTGGCTGTGACTCTGAGCGTTCCGAATCTTGAATCCTTACGATATGG 254
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 120 AATTGAAGATCACTTGGCTGTGAGTCTGAGCGTTCCGAATCTTGAATCCTTACTACATGG 179
Query 255 ATGGGAAAGGAGAACCAAGTATTCATTCATTGTGTTGAATCAATCAGGCAGAGAGCTC-G 313
||| ||||||||| | ||||||||||||||||||||||||||||| |||| || |||| |
Sbjct 180 ATGCGAAAGGAGAGCTAAGTATTCATTCATTGTGTTGAATCAATCGGGCAAAGTGCTCGG 239
Query 314 AACGAACATTTGAAGTAGAAGGTCTCTTCTGTACTGAATTATTAGAATGGTGTCATCCCA 373
|| |||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||
Sbjct 240 AA-GAACATTTGAAGCAGAAGGTCTCTTCTGTTTTGAGTTATTAGATTGGTGTCATCCCA 298
Query 374 AAGTAATGCCTACGAACAAGCTTCAAGAAGTTTGTTTAGAAAATAATAAACTGATCATTG 433
|||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 299 AAGTAATGCCTATGACCAAGCTTCAAGAAGATTGTTTAGAAAATAACAAACTGATCATTG 358
Query 434 AAGTCCAAGTAAAAGTACTTGAAGTTGTTCATGAAGGAGGGGTAACAACTGAGAAGGAGA 493
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 AAGTCCAATTAAAAGTAGTTGAAGTTGTTCATGAAGGAGGGGTAACAACTGAGAAGAAGA 418
Query 494 TGTTCAATATTGAGGGTTTCGATGTTCTCTATACTCAGGTGTCTCGGGTCAGCTGGCTTT 553
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||
Sbjct 419 TGTTCAATATTGAGGGTTTCGATGTTCTCTATACTCAGGTCTCTTGGGTTAGCTGGATTT 478
Query 554 TCGTGGAACATCCAAACATTGCAGTAGATGTCAGAATAAAGAACCAGTTGGTGAGGACGG 613
||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 479 TCGGGGAGCATCCAGACATTGCAGTAGATGTCAGAATAAAGAACCAGTTGTTGAGGACAG 538
Query 614 CATACATTAATGTTCTCCTCGGTCTTATCGAGACACTAGACAGGTCTCCACGGAGTCTTT 673
||||||| |||||||||||||||||||| ||||| ||||| ||| |||||||||||||||
Sbjct 539 CATACATGAATGTTCTCCTCGGTCTTATAGAGACGCTAGATAGGCCTCCACGGAGTCTTT 598
Query 674 CAGAGACTGACCTTAGAGACGCTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCA 733
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGAGACTGAGCTTAGAGACGCTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCA 658
Query 734 AGGTAGATTGGTTAAAGAAAAAGCTTGAGGAGGTTTCCTTGGCGAGGAAGAATGACATTT 793
|||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||
Sbjct 659 AGGTGGATTGGTTAAAGACAAAGCTTGAGGAGGTTTCCTTGGTGAGGAAGGATGAAATTT 718
Query 794 CTGATGGTTCTCAGGTGGAAGAACTCGAGGAACATGTCAAGAATCTCAAACTTGAGCTGG 853
||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 719 CTGATAGTTCTCAGGTCCAAGAACTCGAGGAACATGTCAGGAATCTCAAACTTGAACTGG 778
Query 854 ACAATGAGAAGATTAAATCTTCTACTGCTTCTGAAAGAGTTTTGTTGTTGGAGAAAGAGG 913
|||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 779 ACAATGAGAAGACCAAATCTTCTATTGCTTCTGATAGAGTTTTGTTGTTGGAGAAAGAGG 838
Query 914 TGTTAGATCTCAAAATTGAACTGGA 938
||| |||||||||||||||||||||
Sbjct 839 TGTCAGATCTCAAAATTGAACTGGA 863
> Ahg346044 jgi|Araly1|346044|fgenesh1_pg.C_scaffold_4002386
Length=906
Score = 270 bits (146), Expect = 3e-71
Identities = 587/790 (74%), Gaps = 70/790 (9%)
Strand=Plus/Plus
Query 89 AGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGAGATGCGATATC-T 147
|||| ||||||||||||||||||||||||||||||| |||||||| || || |||||| |
Sbjct 47 AGCAAACGAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGGAAGCTGAGATATCGT 106
Query 148 CCTATAT-T-CATAAGCG-GCGG-ATGCGAATGGTTTATT--A-GGGTTTGGCAAATTGA 200
| | || | ||| | |||| ||| | | || || | ||| | | | |||
Sbjct 107 CTTCGATCTACATTCGAATGCGGTATGTTACCG-TTCATCCCAAGGGA--GACTA-TTGT 162
Query 201 AG--ATCACTTGGCTGTG-ACTCTGAGCGTTCCGAATCTTGAATCCTT-ACGATATGGAT 256
| |||||||||||||| ||| ||| ||| | | || | |||| || | || |||||
Sbjct 163 TGTGATCACTTGGCTGTGTACT-TGAATGTTGCTAGTCCTAAATCATTGAA-ATTTGGAT 220
Query 257 GGGAAAGGAGAACCAAGT-ATTCATTCATTGTGTTGAATCAATCAGGCAGAGAGCTCGAA 315
|| ||| |||| | || || |||| || ||||||||||||| |||| ||||||| ||
Sbjct 221 GGAAAAAGAGAGTTA-GTTATGGATTCGTTTTGTTGAATCAATCCGGCAAAGAGCTCCAA 279
Query 316 ----CGA--ACATTTGAAGTAGA-AGGTCTCTTCTGT-ACTGA-ATT-ATTAGAATGGTG 365
| | ||| ||||| || || | | |||||| | ||| | | || ||| |
Sbjct 280 ATATCAAGTACACCTGAAGAAGGCAGCT-TGTTCTGTGA-TGAGACCCAA-AGC-TGGGG 335
Query 366 TCATCCCAAAGTAATGCCTACGAAC-AAGCTTCAA---GAAG--TTTGTTTAGAAAATAA 419
| ||||||||||| | ||| | | |||||| || |||| ||| || |||| |
Sbjct 336 TTATCCCAAAGTATTTCCT-CTTAGTAAGCTTAAAAAAGAAGGGTTTCTTGAGAACG-AC 393
Query 420 TAAACTGATCATTGAAGTCCAAGTA-AAAGTACTTGAAGTTGTTCATGAAGGAGGGGTAA 478
||||||||| || |||| |||| ||| || |||||| |||||||| || || |||||
Sbjct 394 -AAACTGATCGTTAAAGTTGAAGTGGAAA-TAGTTGAAGCTGTTCATGTAGAAGAGGTAA 451
Query 479 CAACTGAGAAGGAGATGTT-CAATATTGAGGGTTTCGATGTTCTCT-ATACTCA-GGTGT 535
| || ||||| |||||| | |||| | |||||||| |||| || ||||||| |||||
Sbjct 452 C---TGGGAAGGGGATGTTACG-TATTAAAGGTTTCGAAGTTC-CTTATACTCAAGGTGT 506
Query 536 CTCGGGTCAGCTGGCTTTTCGTGGAA-CATCCAAACATTGCAGTAGATGTCAGAAT-AAA 593
| | | ||| | ||||||| || || || |||||||||||||| ||| || |||
Sbjct 507 TTTAG-TGAGCAAGATTTTCGTA-AAGCACCCGGACATTGCAGTAGATTTCA-AACCAAA 563
Query 594 GAACCA-GTTGGTGAGGACGGCATACATTAATGTTCTCCTCGGTCTTATCGAGACACTAG 652
|||||| || | ||| ||| |||||||| ||||| || ||||| || ||||||||||| |
Sbjct 564 GAACCAAGTAG-TGAAGACAGCATACATGAATGTCCTGCTCGGCCTCATCGAGACACT-G 621
Query 653 -ACAGGTCTCCACGGAGTCTTT-CAGAGACTGAC-CTTAGAGACGCTCACATCGAGTTGA 709
||| | ||||| | || |||| | || ||| | || ||| ||||||||| ||||||||
Sbjct 622 CACAAGCCTCCATGTAG-CTTTACTGATACT-ATGCTAAGAAACGCTCACAGCGAGTTGA 679
Query 710 GCGAGCTAACAGAAGCAGGATTCAAGGTAGATTGGTTAAAGAAAAAGCTTGAGGAGGTTT 769
|||||||||||||||| || |||||| | ||||||||||||||||| ||||||||||||
Sbjct 680 GCGAGCTAACAGAAGCGGGCTTCAAGCTGGATTGGTTAAAGAAAAAACTTGAGGAGGTTG 739
Query 770 CCTTGGCGAGGAAGAATGACATTT-CTGATGGTTCTCAGGTGGAAGAACTCGAGGAACAT 828
|||||| ||||||||||| || || | | | |||||| ||| |||||| | | |||||
Sbjct 740 CCTTGGAGAGGAAGAATG-CAATTGCCGGTAGTTCTCGGGTCGAAGAATTGGTGGAACG- 797
Query 829 G-TCAAGAAT 837
| ||||||||
Sbjct 798 GATCAAGAAT 807
> Ahg346045 jgi|Araly1|346045|fgenesh1_pg.C_scaffold_4002387
Length=882
Score = 230 bits (124), Expect = 5e-59
Identities = 526/710 (74%), Gaps = 68/710 (10%)
Strand=Plus/Plus
Query 81 GAATCATGAGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGAGATGC 140
|||||| ||||||| |||||||||||||||||||||||||||| ||||||| || |||
Sbjct 39 GAATCAAAAGCAGACAAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGAAAGCTGC 98
Query 141 GATATC-TC--CTATATTCATAAGCGGCGGATGCGAATGGTTTATTAGGGTTT------- 190
|||||| || || ||||| |||||||||||||||||| | ||| ||||
Sbjct 99 GATATCGTCTTCTTTATTCGGCTGCGGCGGATGCGAATGGTATGTTACCGTTTATCCCAA 158
Query 191 GGCA-A--ATTGAAG--ATCACTTGGCTGTGACTCT-GAGCGTTCCGAATCTTGAATCCT 244
|| | | |||| | ||||||||||||||| ||| || ||| | | || | |||| |
Sbjct 159 GGGATACTATTGTCGTGATCACTTGGCTGTGA-TCTTGAATGTTGCTAGTCCTAAATCAT 217
Query 245 T-ACGATA-TGGATGGGAAAGGAGAACCAAGTA-TT-CATTCATTGTGTTGAATCAATCA 300
| | || | ||||||| |||| | || ||| || | ||| || |||||||||| ||
Sbjct 218 TGA-GA-ACTGGATGGAAAAGAA-AAGTTAGTCCTTGC-TTCGTTTTGTTGAATCAGTCC 273
Query 301 GGCAGAGAGCTCGAACGA--A----CATTTGAAGTAGAAGGT--CTC-TTCTGT-ACTGA 350
|||| ||||||| || | | ||| ||||| |||||| || |||||| | | |
Sbjct 274 GGCAAAGAGCTCCAAATATTAAGTACATCTGAAGAAGAAGGCAGCTTGTTCTGTGA-T-A 331
Query 351 AT-TATTAGAATGGTGTCATCCCAAAGTAATGCCTACGAA-CAAGCTT-CA-A-GAAGT- 404
| | | ||| || ||| ||||||| ||||| | | ||||||| || | ||||
Sbjct 332 AGGTCCCATCCTGGGGTTATCACAAAGTATTGCCT-CTTAGCAAGCTTACAGAAGAAGAG 390
Query 405 TTGTTTAGAAAATAATAAACTGATCATTGAAGTCCAAGTAAAAGTACTTGAAGTTGTTCA 464
|| |||||| ||| | ||| |||||||| |||| |||||||| || |||||| ||||||
Sbjct 391 TT-TTTAGAGAATGACAAATTGATCATTAAAGTGGAAGTAAAATTAGTTGAAGCTGTTCA 449
Query 465 TGAAGGAGGGGTAACAACTGAGAAGGAGATGT-TCAATATTGAGGGTTTCGATG-TTCTC 522
||||| || |||||| || ||||| ||||| | | | | | |||||| | | ||||
Sbjct 450 TGAAGAAGAGGTAAC---TGGGAAGGGGATGTAT-AGTCTCAATGGTTTCCA-GATTCTT 504
Query 523 TATACTCAGGTGTCTCGG-GTCAGCTGGCTTTTCGT--GGAACATCCAAACATTGCAGTA 579
||||||||||| ||| || ||| | |||||| || || || |||||||||||
Sbjct 505 TATACTCAGGT-TCTTTTAGTGAGCAAGATTTTCGCAAGGCAC--CCGGACATTGCAGTA 561
Query 580 GATGTCAGAAT-AAAGAACCA-GTTGGTGAGGACGGCATACATTAATGTTCTCCTCGGTC 637
||| ||| || ||||| ||| || | ||| ||| |||||||| ||||| ||||| || |
Sbjct 562 GATTTCA-AACCAAAGAGCCAAGTAG-TGAAGACAGCATACATGAATGTCCTCCTTGGCC 619
Query 638 TTATCGAGACACTA-GACAGGTCTCCACGGAGTCTT-TCAGAGACTGACCTTAG-AGACG 694
| ||||||||||| | || | |||||| ||| ||| || |||||||| || || | |||
Sbjct 620 TCATCGAGACACTGCG-CAAGCCTCCACAGAG-CTTCTCTGAGACTGAGCTAAGCA-ACG 676
Query 695 CTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCAAGGTAGATTGG 744
|| ||| | ||||||| ||||||||||||||||| |||||| | ||||||
Sbjct 677 CTTACAGCAAGTTGAGAGAGCTAACAGAAGCAGGCTTCAAGCTGGATTGG 726
> Ahg924583 jgi|Araly1|924583|scaffold_200144.1
Length=939
Score = 222 bits (120), Expect = 9e-57
Identities = 611/834 (73%), Gaps = 90/834 (11%)
Strand=Plus/Plus
Query 69 AAGAGATATGGAGAATCATG-AGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGG 127
||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||| |
Sbjct 15 AAGAGATATGGAGGATCA-GAAGCCGACGAGTTTCACGTTTGAGATAGATAACTTCTCCG 73
Query 128 AGAAGGGAGATGCGAT-ATCTC--CTATA-TTCATAAGCGGCGGATGCGAATGGTTTATT 183
|||||| | || ||| | | | | | ||| |||||||||| |||||||||| | ||
Sbjct 74 AGAAGGAATCTGTGATTAGAACAACAA-ACTTCTTAAGCGGCGGCTGCGAATGGTATGTT 132
Query 184 AGGGTT--T------GGC-A--A-ATTGAAGATCACTTGGCTGTG-AC-TCTGAGCGTTC 229
| |||| | || | | ||||| ||||||||| || || || |||| ||||
Sbjct 133 AAGGTTCATCCCAAAGGAGATCACATTGATGATCACTTGTCTATGTACCTCTG--CGTTG 190
Query 230 CGAATCTTGAATCCTTACGATAT-GGATGGGAAAGGAGAACCAAG-TATTCATTC-ATTG 286
|||||| |||||| || ||| || |||||| |||| | | | | | || ||| || |
Sbjct 191 CGAATCCTGAATCGTTGCGA-ATTGGATGGAAAAG-ACTAGCT-GCT-TT--TTCCATCG 244
Query 287 -TGT--TGAATCAATCAGGCAGAGAGCTCGA-ACGAACATTTGAA--GTAGAAGGTCTC- 339
| | ||||| |||| |||| ||||||| | | ||| | |||| || | |
Sbjct 245 CTCTACTGAATGAATCGGGCAAAGAGCTCTACA-GAAAACATGAACCGTTTTACCAATTG 303
Query 340 TTCTGTACTGA-ATT--ATTAGAATGGTGTCATCCCAAAGTAATGCCTAC--GAACAAGC 394
||||| |||| || | || | ||| || ||||| | ||||| | ||| ||||
Sbjct 304 TTCTGCGCTGAGATCCCACTA-A-TGG-GTTGGCCCAAGGCCGTGCCT-CTTGAA-AAGC 358
Query 395 TTCAAGAA---GT-TTGTTTAGAAAATAATAAACTGATCATTGAA-GTCCAAGTAAAAGT 449
|||||||| | || ||| || ||||||||| | ||| || || |||||||| |||||
Sbjct 359 TTCAAGAAAAAGGGTT-TTTGGAGAATAATAAATTCATC-TTCAATGTCCAAGTTAAAGT 416
Query 450 A-CTTGAAGTTGTTCATGAAGGAGGGGTAACAACTGAGAAGGAGATGTTCA-ATATTGAG 507
| || |||||||| |||||||| ||||| || ||| |||||||| | || | |
Sbjct 417 AGCTC-AAGTTGTTGATGAAGGATCTGTAAC---TGGGAATGAGATGTT-AGATGTCAAT 471
Query 508 GGTTTCGATGTTCTCTATACTCAGGTGTCT-CGGGTCAGCTGGCTTTTCGTGGAACATCC 566
|||||| | ||||| ||| |||||||| || | | | || ||| ||||||||||||| ||
Sbjct 472 GGTTTCCAAGTTCTTTATTCTCAGGTGGCTTCAG-TGAGTTGGATTTTCGTGGAACACCC 530
Query 567 AAACATTGCAGTAGA-TGTCAGAAT-AAAGAACCAGTTGGTGAGGACGGCATACATTAAT 624
|| ||||||| || | ||| || ||||||||| || | | ||| | ||||| |||
Sbjct 531 TGACGTTGCAGT-GAATTTCA-AACCAAAGAACCAATTACTAAAGACAACGTACATGAAT 588
Query 625 GTTCTCCTCGGTCTTATCGAGACACTAGA-CAGGTCTCCACGGAGTCTTTCA--GAGACT 681
| ||||||||||| ||||||||||| || || | ||| || || | | || ||||||
Sbjct 589 ATCCTCCTCGGTCTAATCGAGACACT-GAACAAGCCTCTACATAG-CAT-CACCGAGACT 645
Query 682 GACCTTAGAGA-CGCTCACATCGAGTTGAGCGAGCTAACAGAAGCAGGATTCAAGGTAGA 740
|| || | | | | |||| | ||| |||| ||||||||||||||| || |||||| ||||
Sbjct 646 GAGCTAA-ACAACTCTCAGAGCGACTTGATCGAGCTAACAGAAGCGGGCTTCAAGCTAGA 704
Query 741 TTGGTTAAAGAA-AAAGCTTGAGGAGGTTTCCTTGGCGAGGAAGA-ATG-ACATTTCTGA 797
||||| || || ||||||||| ||||||||||||| |||||||| | | | || | |||
Sbjct 705 CTGGTTGAA-AATAAAGCTTGATGAGGTTTCCTTGGAGAGGAAGATA-GCAGATGT-TGA 761
Query 798 TGGTTCTC-AGGTGGAAGAAC-TCG-AGGAACATGTCAAGAATCTCAAACTTGA 848
||||| || || | || | | | | || ||||| |||||||||||||| ||||
Sbjct 762 TGGTTATCGAG-TCCAA-AGCCTGGCAG-AACATATCAAGAATCTCAAAATTGA 812
> Ahg902237 jgi|Araly1|902237|Al_scaffold_0004_2887
Length=507
Score = 89.8 bits (48), Expect = 1e-16
Identities = 85/102 (83%), Gaps = 5/102 (5%)
Strand=Plus/Plus
Query 81 GAATCATGAGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGAGATGC 140
|||||| | ||||| |||||||||||||||||||||||||||| ||| |||| || ||
Sbjct 39 GAATCAAAAACAGACTAGTTTCACGTTTGAGATAGATAACTTCTCGGAAAAGGAAGCTGA 98
Query 141 GATATC-TC--CTATATTCATAA-GCGGCGGATGCGAATGGT 178
|||||| || |||||||| || ||||| ||||| ||||||
Sbjct 99 GATATCGTCTTCTATATTCG-AATGCGGCAGATGCAAATGGT 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101739044395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5