BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42480.1
Length=2309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321928 jgi|Araly1|321928|fgenesh1_pm.C_scaffold_4001985 942 0.0
Ahg935128 jgi|Araly1|935128|scaffold_403116.1 309 6e-83
Ahg935131 jgi|Araly1|935131|scaffold_403119.1 279 5e-74
Ahg902246 jgi|Araly1|902246|Al_scaffold_0004_2896 220 3e-56
Ahg943361 jgi|Araly1|943361|scaffold_603905.1 102 1e-20
Ahg937876 jgi|Araly1|937876|scaffold_502067.1 102 1e-20
Ahg924972 jgi|Araly1|924972|scaffold_200533.1 97.1 5e-19
Ahg887366 jgi|Araly1|887366|Al_scaffold_0034_1 87.9 3e-16
Ahg346045 jgi|Araly1|346045|fgenesh1_pg.C_scaffold_4002387 82.4 1e-14
Ahg346044 jgi|Araly1|346044|fgenesh1_pg.C_scaffold_4002386 67.6 4e-10
Ahg321927 jgi|Araly1|321927|fgenesh1_pm.C_scaffold_4001984 67.6 4e-10
> Ahg321928 jgi|Araly1|321928|fgenesh1_pm.C_scaffold_4001985
Length=2229
Score = 942 bits (510), Expect = 0.0
Identities = 692/776 (89%), Gaps = 27/776 (3%)
Strand=Plus/Plus
Query 78 ATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGAT 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGAT 60
Query 138 GTGATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGAATGGTTCCTTTACCTCTATCCG 197
|||||||||| |||||||||||||||| ||||||||||||||| | ||||||||| |
Sbjct 61 ACGATAGCGTCTCAGGCATTCGTGAGTGGCGGATGCGAATGGTTCATCTACCTCTATTC- 119
Query 198 AAGGGACAGAGTCTTAATGATGATCACATGTCTTTGTAT-CTGTCCGTTGCAAATAGTAA 256
|| || | | ||| ||||||||||||| | || | |||||||||| |||
Sbjct 120 ---GG--AG-G-------G-TGACCACATGTCTTTGT-TCCTATACGTTGCAAATCGTAC 164
Query 257 ATCCTTGGGAAGTGGATGGAAACGGAGTGCTAAATTTTACTTCTCTGTGCTGAATGAATC 316
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 165 ATCATTGGGAAGTGGATGGAAACGGAGTGCTAACTTTTACTTCTCTGTTCTGAATCAATC 224
Query 317 TGACAAAGAACTCTACAGATCAACTATTAGCCAAGAATTCTGTCTGTTTTGCGTTCAGGC 376
||| ||||| |||||||||||| || || | |||||| || | ||||| ||||| |||
Sbjct 225 TGAAAAAGAGCTCTACAGATCACCTGTTGGACAAGAACCCTATTTGTTTCGCGTTGAGGG 284
Query 377 TCTAGCCTGGGGTATCCGAAAGGCT-TTGCCTCTTAGCAAGTTTGAGGAAAAAGGGTTTT 435
|| || ||||||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 285 TCCAGGCTGGGGTTTCCGAAA-GATCTTGCCTCTTAGCAAGTTTGAGGAAAAAGGGTTTT 343
Query 436 TGGAGAAGGACAAACTCATCGTTGAAGTCTACATCAAAAATT-TTGAAGCAGTGGATGGA 494
|||||||||||| ||||||| |||||||||||||| ||| || ||||||| ||||| |||
Sbjct 344 TGGAGAAGGACAGACTCATCATTGAAGTCTACATC-AAAGTTGTTGAAGCTGTGGACGGA 402
Query 495 GAAGGCGGAGGTGTATCAAAGAAGGAGGAGGAGGAGACTGTCGAGATTATCGGTTCCCAG 554
||||||||||| ||||||||||| || | | |||||||| || |||||| |||| ||
Sbjct 403 GAAGGCGGAGGCGTATCAAAGAA-GA--A--A-GAGACTGTGGATATTATCAATTCCGAG 456
Query 555 GATTATGCTTCTCAGGCAAGTTTCAAAGGATCCGTTACTTTAGTGAGAAAGATATTCGCA 614
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 457 GATTATGCTTCTCAGGCAAGTTTAAAAGGATCCGTTACTTTAATGAGAAAGATATTCGCA 516
Query 615 GAGCACCCAGAAATTGCAGAAGAGTTCAAACCAAAGAACCAAGTGTTCAAGAAAGAATAC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GAGCACCCAGAAATTGCAGAAGAGTTCAAACCAAAGAACCAAGTGTTCAAGAAAGAATAC 576
Query 675 ATGAATATCCTAAGAAACGCTTACCGCAAGGTTAGTGAGCTAGCGGAAGTAAAGATGGAC 734
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 577 ATGAATATCCTAAGAAACGCTTACAGCAAGGTTAGTGAGCTAGCGGAAGTAAAGATGGAC 636
Query 735 TGGGTGAAGTCAAAGATTGAAGAAGTTTCCTTGGAGATAAAGAAACGAAATGATGAGGTT 794
||||||||||||||||||| |||||||||||||||| ||||||| || || ||||| |
Sbjct 637 TGGGTGAAGTCAAAGATTGGTGAAGTTTCCTTGGAGAGAAAGAAAGGATATCATGAGACT 696
Query 795 AGTGAAGTTCCCTTGGATAATAAGATAGCAgatgatgatgatgatgattatgatga 850
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 697 AGTGAAGTTCCCTTGGATAATAAGATAGCAGATGAAGATGATGATGATGATGATGA 752
Score = 708 bits (383), Expect = 0.0
Identities = 482/529 (91%), Gaps = 10/529 (2%)
Strand=Plus/Plus
Query 1781 TGAGGTTTCCTTGAAGGACAAGAAACGAGATGATGCTGATGAGTCTCGGTTCCAAAAACT 1840
||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 1707 TGAGGTTTCCTTGAAGGGCAAGAAACGAGATGATGCTGATGGGTCTCGGCTCCAACAACT 1766
Query 1841 AGAGGAACGCCTCAAGAATCTCGAGTTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGA 1900
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1767 AGAGGAACGCCTCAAGAATCTTGAGTTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGA 1826
Query 1901 GGAAGTTTCGATAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGGTCCAACGACTAGA 1960
|||||||||| | | || |||||||||||||||||| |||||||||||||| ||||||
Sbjct 1827 GGAAGTTTCGTTGGACAAGAAGAAAGCAGATGCTGATTTGTCTCGGGTCCAACAACTAGA 1886
Query 1961 GGAACGCCTCAAGAATCTTGAGCTAATGGATTTGGACTGTTTGAAATCAAAGCTTGAGTT 2020
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1887 GGAACGCCTCAAGAATCTTGAGCTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGAGGA 1946
Query 2021 AGTTTCGA-TAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGATCCAACGACTAGAGG 2079
|||||| | | |||||||||||||| |||||||| |||||||| |||||| ||| ||||
Sbjct 1947 AGTTTC-ATTGGAGAATAAGAAAGCAAATGCTGATTGGTCTCGGGTCCAACAACTCGAGG 2005
Query 2080 AACGTGTTAAGAAACTTGAGCTGATGGAATTGGAC-GATTTGAAGTCAAAGCTTGAGGAG 2138
||| | | || |||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 2006 AAC--G-T---AATCTTGAGCTTATGGAATTGGACTG-TTTGAAGTCAAAGCTTGAGGAG 2058
Query 2139 GTTTCCTTGGAGAGGAAGAAATCAGACGATGCTTATAGGTCTCGGGTCTACCAACTCGAG 2198
|||| ||||||||| |||||||||||||||| | |||||||||||||| | ||| |||||
Sbjct 2059 GTTTTCTTGGAGAGAAAGAAATCAGACGATGATGATAGGTCTCGGGTCCAACAAATCGAG 2118
Query 2199 GAATGCTTCAAGAACCTTGAGCTGATGGTGTTGGATTTCAAAGTTGAACTGGACAAGAAA 2258
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 2119 CAATGCTTCAAGAACCTTGAGCTGATGGTGTTGGACCTCAAAGTTGAACTGGACAAAAAA 2178
Query 2259 AAGGACAAATCTTGTGATGATGGATTTTTGTTGGTCGACGAGTTTGCTT 2307
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 AAGGACAAATCTTGTGATGATGGATTTTTGTTGGTCGACGAGTTTGCTT 2227
Score = 538 bits (291), Expect = 7e-152
Identities = 408/464 (88%), Gaps = 10/464 (2%)
Strand=Plus/Plus
Query 1235 GAATCATCAGAAGACGA---GTTTCACCTTTGAGATAGAAAACTTTTCAGAGAGGAAATA 1291
||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||
Sbjct 1182 GAATCATCAGAAGACGAGTTGTTTCACCTTTGAGATAGATAACTTTTCCGAGAAGAAATA 1241
Query 1292 TTTGATATG-GTCTCCTATATTCATAAGCGGCCAATGCCATTGGTTTGTTAAAGTTTATC 1350
| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1242 TGTGATA-GCGTCTCCTATATTCATAAGCGGCCAATGCCAATGGTTTGTTAAAGTTTATA 1300
Query 1351 CGA-TAAAAGACAATAACTACGATCACGTGTCTGTGTATCTGCACGTTGCGAATCCTCAA 1409
||| | | || |||| | |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1301 CGAATGGAT-ACTTTAACAAAGATCACGTGTCTGTATATCTTCACGTTGCGAATCCTCAA 1359
Query 1410 TCACTACGACCTGGATGGAAAAGGAGAGCTCATTTTTCATTGATTCTGTCTAATCAATCA 1469
||| |||||||||||||||||||||||| | ||| |||||| | ||||| ||||||||||
Sbjct 1360 TCATTACGACCTGGATGGAAAAGGAGAGTTAATTATTCATTCACTCTGTTTAATCAATCA 1419
Query 1470 GGCAAAGAGGTCAAAATACCATCTGATTCATGCGACTTGTTCTGCACTGAGTTGTCATC- 1528
||||||||| || ||| | || |||| ||||||||| |||||||||||||| | ||| |
Sbjct 1420 GGCAAAGAGCTCCAAAGAACACCTGAATCATGCGACCTGTTCTGCACTGAGGTCTCAGCC 1479
Query 1529 -GAG-TTATCCCAAAATATTGCCTCCTATCAAGCTTAAAGAAGAAGGGTTTTTGGAGAAC 1586
| | |||||||||| ||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1480 TGGGGTTATCCCAAACTATTGCCTCTTAGCAAGCTTAAAGAAGAAGGGTTTTTAGAGAAC 1539
Query 1587 GACAAACTGATCATTACGGTGGAAGTAAAAGTAGTTGAAGTTGTTCATCCAGGAGAGTTA 1646
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1540 GACAAACTGATCATTAAGGTGGAAGTAAAAGTAGTTGAAGTTGTTCATGTAGGAGAGGTA 1599
Query 1647 ACTGGGAAGGAGATGGTAGAATTCAAGGAATTACAGGATCTTTA 1690
|||||||||||||||||||| ||||||| || |||| ||||||
Sbjct 1600 ACTGGGAAGGAGATGGTAGATTTCAAGGGTTTCCAGGTTCTTTA 1643
Score = 296 bits (160), Expect = 5e-79
Identities = 237/274 (86%), Gaps = 5/274 (2%)
Strand=Plus/Plus
Query 1929 GATGCTGATAGGTCTCGGGTCCAACGACTAGAGGAACGCCTCAAGAATCTTGAGCTAATG 1988
||||||||| |||||||| |||||| |||||||||||||||||||||||||||| | |||
Sbjct 1738 GATGCTGATGGGTCTCGGCTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGTTGATG 1797
Query 1989 GATTTGGACTGTTTGAAATCAAAGCTTGAGTTAGTTTCGATAAAGAATAAGAAAGCAGAT 2048
|| ||||||||||||||||||||||||||| ||||||| | | || ||||||||||||
Sbjct 1798 GAGTTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGTTGGACAAGAAGAAAGCAGAT 1857
Query 2049 GCTGATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAA 2108
|||||| ||||||| |||||| |||||||||||| | ||||| ||||||||||||||
Sbjct 1858 GCTGATTTGTCTCGGGTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGCTGATGGAG 1917
Query 2109 TTGGAC-GATTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGA 2167
|||||| | |||||| |||||||||||||| ||||| ||||||| |||||| || | |
Sbjct 1918 TTGGACTG-TTTGAAATCAAAGCTTGAGGAAGTTTCATTGGAGAATAAGAAAGCA-A--A 1973
Query 2168 TGCTTATAGGTCTCGGGTCTACCAACTCGAGGAA 2201
|||| || ||||||||||| | ||||||||||||
Sbjct 1974 TGCTGATTGGTCTCGGGTCCAACAACTCGAGGAA 2007
Score = 291 bits (157), Expect = 2e-77
Identities = 302/368 (82%), Gaps = 26/368 (7%)
Strand=Plus/Plus
Query 1757 GGACAGTTTGAAGTCAAATCATCATGAGGTTTCCTTGAAGGACAAGAA-ACGAG-ATGAT 1814
|||| ||||||| ||||| | | | || ||||| || ||||||||| | || | |||
Sbjct 1803 GGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGTT---GGACAAGAAGA-AAGCA-GAT 1857
Query 1815 GCTGATGAGTCTCGGTTCCAAAAACTAGAGGAACGCCTCAAGAATCTCGAGTTGATGGAG 1874
|||||| ||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 1858 GCTGATTTGTCTCGGGTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGCTGATGGAG 1917
Query 1875 TTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGATAA-AGAATAAGAAAGCAGATGC 1933
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1918 TTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTC-ATTGGAGAATAAGAAAGCAAATGC 1976
Query 1934 TGATAGGTCTCGGGTCCAACGACTAGAGGAACGCCTCAAGAATCTTGAGCTAATGGATTT 1993
|||| ||||||||||||||| ||| |||||||| | || ||||||||| ||||| ||
Sbjct 1977 TGATTGGTCTCGGGTCCAACAACTCGAGGAACG--T-AA---TCTTGAGCTTATGGAATT 2030
Query 1994 GGACTGTTTGAAATCAAAGCTTGAGTTAG-TTT-CGATAAAGA-ATAAGAAAGCAGA--- 2047
|||||||||||| |||||||||||| || ||| | | ||| | |||||| ||||
Sbjct 2031 GGACTGTTTGAAGTCAAAGCTTGAGG-AGGTTTTCT-TGGAGAGA-AAGAAATCAGACGA 2087
Query 2048 TGCTGATAGGTCTCGGATCCAACGACTAGAGGAACGTGTT-AAGAAACTTGAGCTGATGG 2106
|| ||||||||||||| |||||| | | ||| || | || ||||| |||||||||||||
Sbjct 2088 TGATGATAGGTCTCGGGTCCAACAAATCGAGCAATGC-TTCAAGAACCTTGAGCTGATGG 2146
Query 2107 AATTGGAC 2114
||||||
Sbjct 2147 TGTTGGAC 2154
Score = 289 bits (156), Expect = 8e-77
Identities = 190/206 (92%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 825 gatgatgatgatgatgattatgatgaA---TGGGAGCAAGACATCGAGGAACGCCTCAAG 881
|||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||
Sbjct 763 GATGATGATGATGATGATGATGATGAATCTTGGGCCCAAGACCTCGAGGAACGCCTCAAG 822
Query 882 AATCTTGAGGGGATGGAATTTGACTCCAAGTTGGACAGTTTGAAGTCAAAGCTTGATGAA 941
||||| ||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||
Sbjct 823 AATCTCGAGGGGATGGAATTTGACTTCAAGATGGACTGTTTGAAGTCAAAACTTGATGAA 882
Query 942 ATTTCCTTAGAGAGGAAGAAATCATATGATGCTGATGGGTCTCGGGTCCAGCAACTCGAG 1001
||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 883 ATTTCCTTAGAGAGGAAGATATCATATGATGCTGATCGGTCTCGGTTCCAGCAACTCGAG 942
Query 1002 GAACGAGTCAAGGATATTGAGCTGAT 1027
||||||||||||||| ||||||||||
Sbjct 943 GAACGAGTCAAGGATCTTGAGCTGAT 968
Score = 206 bits (111), Expect = 8e-52
Identities = 154/172 (90%), Gaps = 13/172 (8%)
Strand=Plus/Plus
Query 1031 GAAGTCAAAGCTTGAGGAAGTTTCCTCGGAGAAGAAGAAGAAAGCAGATGCTGATGGG-- 1088
||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1012 GAA-TCAAAGCTTGAGGAAGTTTCTTTGGAGAAGAAGAAGACTGCAGATGCTGATGGGTC 1070
Query 1089 TC---T-------CTAGAGGATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAA 1138
|| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TCAGGTCCAAGAACTAGAGGATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAA 1130
Query 1139 AGTTGAAGTGGACAACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTG 1190
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGTTGAACTGGACAACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTG 1182
> Ahg935128 jgi|Araly1|935128|scaffold_403116.1
Length=1154
Score = 309 bits (167), Expect = 6e-83
Identities = 386/488 (79%), Gaps = 29/488 (6%)
Strand=Plus/Plus
Query 56 ACGAAAGCGTTTTTGGTCAGCTATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGA 115
||||||||| |||| ||| ||||||||||||||||||| ||| || |||||||||||
Sbjct 1 ACGAAAGCG-TTTTCATCAAATATGTGGAATCAAAAGCCGAGTTACAGATTTGAGATAGA 59
Query 116 TAACTTCTCGGAGAAGAAAGATGTGATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGA 175
||||||||||||||||||| ||| ||| ||||| ||| |||||||| || ||||||||
Sbjct 60 TAACTTCTCGGAGAAGAAATCTGTCATAACGTCTCAGGTGTTCGTGAGCGGCGGATGCGA 119
Query 176 ATGGT-TCCTTTACCTCTATCCGAAGGGACA-G-AGTC-TTAA--T-GATGATCACATGT 228
||||| || | | || ||||| |||||| | | ||| |||| | |||||| || |||
Sbjct 120 ATGGTGTC-TCAAACTTTATCCAAAGGGAGATGGAGTTGTTAAACTTGATGATTACTTGT 178
Query 229 CTTTGTATC-TGTCCGTTGCAAATAGTAAATCCTTGGGAAGTGGATGGAAACGGAGTGCT 287
||||||| | || |||||||||| |||||| ||| |||||||||||||| ||| ||||
Sbjct 179 CTTTGTA-CGTGAACGTTGCAAATCCTAAATCTTTGAGAAGTGGATGGAAAAGGATTGCT 237
Query 288 AAATTTTACTTCTCT-GTGCTGAATGAATCTGACAAAGAACTCTACAGATCAACTATT-- 344
|| ||||||||| || ||| ||||| |||| |||||||| |||||||||||| | |||
Sbjct 238 AACTTTTACTTC-CTTGTGTTGAATCAATCCGACAAAGAGCTCTACAGATCACCAATTGG 296
Query 345 AGC-CAAGAATTCTGTCTGTTTTGCGTTCAG-GCTCTAGCCTGGGGTATC-CGAAAGG-C 400
|| |||||| | | |||||||| | || | || | |||||||| | ||| | |
Sbjct 297 AGGACAAGAAAGCACCCCGTTTTGCGCTGAGAG-TCCATCCTGGGGT-TGGCGATATTTC 354
Query 401 TTTGCCTCTTAGCAAGTTTGAGGAAAA-AGGGTTTTTGGAGAAGGACAAACTCATCGTTG 459
|| | |||||||||||||| || |||| ||| |||||||| | |||| ||||||| |||
Sbjct 355 TT-GTCTCTTAGCAAGTTTCAG-AAAACAGGACTTTTGGAGGACGACAGACTCATCATTG 412
Query 460 AAGTCTACATCAAAAATT-TTGAAGCAGTGGATGGAGAAGGCGGAGGTGTATCA--A-AG 515
|||||||||| || | || ||||||| | |||||||||| | || ||||||| | ||
Sbjct 413 AAGTCTACATTAATA-TTGTTGAAGCTTTTGATGGAGAAGAAGAAGATGTATCATCAGAG 471
Query 516 AAGGAGGA 523
||||||||
Sbjct 472 AAGGAGGA 479
Score = 215 bits (116), Expect = 1e-54
Identities = 274/343 (80%), Gaps = 40/343 (12%)
Strand=Plus/Plus
Query 885 CTTGAG-GGGATGGAATTT-GACTCCAAGTTGGACAGTTTGAAGTCAAAGCTTGATGAAA 942
|||||| || ||| |||| |||| ||| ||||| ||||||| ||||| |||| ||
Sbjct 796 CTTGAGCCGG-TGG-ATTTGGACTTTAAGATGGACCCTTTGAAGACAAAGATTGAGGAGG 853
Query 943 TTTCCTTAGAGAGGAAGAAATCATATGATGCTGATGGGTCTCGGGTCCAGCAACTCGAGG 1002
|| |||| ||||||||||||||| ||||||||||| |||||||||| || ||||| ||||
Sbjct 854 TTCCCTTGGAGAGGAAGAAATCAGATGATGCTGATTGGTCTCGGGTACATCAACTAGAGG 913
Query 1003 AACG-----AG----TC-A----A-GG-A-T--A-TTG-AGCT-GA-T-TTTGAAGTCAA 1038
|||| || || | | || | | | ||| || | || | |||||||||||
Sbjct 914 AACGCCTCAAGAATCTCGAGCTGATGGAATTGGACTTGAAGTTGGACTGTTTGAAGTCAA 973
Query 1039 AGCTTGAGGAAGTTTCCTCGGAGAAGAAGAAGAAAGCAGATGCTGATGGGTCT--C---T 1093
||||||||||||||||| | | || |||||||||||||||||||| ||||| | |
Sbjct 974 AGCTTGAGGAAGTTTCC-CTG-GA-GAAGAAGAAAGCAGATGCTG--GGGTCCAACAACT 1028
Query 1094 AGAGG-ATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAAAGTTGAAGTGGACA 1152
||||| | || || ||||||| || | |||||||||| ||||||||||||||| ||||||
Sbjct 1029 AGAGGGA-AGCGTCAAGAATCATGTGATAATGGTGTCGGATCTCAAAGTTGAACTGGACA 1087
Query 1153 ACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTGGTTGA 1195
||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1088 ACGAGAAGGCCAAATCTTCCGCTGATGGATTTTTGTTGGTTGA 1130
Score = 134 bits (72), Expect = 4e-30
Identities = 216/279 (77%), Gaps = 35/279 (13%)
Strand=Plus/Plus
Query 1730 TGAGCTGATGAATATGGACATGAAGCA-GGACAGTTTGAAGTCAAATCA-TCATGAGGTT 1787
||||| | || || ||||| | ||| | |||| ||||||| |||| | | | ||||||
Sbjct 798 TGAGCCGGTGGATTTGGACTTTAAG-ATGGACCCTTTGAAGACAAA-GATTGAGGAGGTT 855
Query 1788 TCCTT-GA-AGGACAAGAAA-CGAGATGATGCTGA-TGAGTCTCGGTTCCAAAAACTAGA 1843
|||| || ||| |||||| | |||||||||||| || ||||||| | || |||||||
Sbjct 856 CCCTTGGAGAGG--AAGAAATC-AGATGATGCTGATTG-GTCTCGGGTACATCAACTAGA 911
Query 1844 GGAACGCCTCAAGAATCTCGAG-T--TG-A-T-GGA---G---TTGGACTGTTTGAAATC 1891
|||||||||||||||||||||| | || | | ||| | |||||||||||||| ||
Sbjct 912 GGAACGCCTCAAGAATCTCGAGCTGATGGAATTGGACTTGAAGTTGGACTGTTTGAAGTC 971
Query 1892 AAAGCTTGAGGAAGTTTCGATAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGGTCCA 1951
|||||||||||||||||| | |||| |||||||||||||||| || | ||||
Sbjct 972 AAAGCTTGAGGAAGTTTCCCTGGAGAAGAAGAAAGCAGATGCTG---GG----G--TCCA 1022
Query 1952 ACGACTAGAGG-AACGCCTCAAGAATCTTGAGCTAATGG 1989
|| |||||||| || || ||||||||| || | ||||||
Sbjct 1023 ACAACTAGAGGGAA-GCGTCAAGAATCATGTGATAATGG 1060
> Ahg935131 jgi|Araly1|935131|scaffold_403119.1
Length=1093
Score = 279 bits (151), Expect = 5e-74
Identities = 263/314 (84%), Gaps = 20/314 (6%)
Strand=Plus/Plus
Query 1993 TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT 2051
|||| || ||||||||||||||||| | | ||||| | | || |||||||||||||||
Sbjct 697 TGGAATGGTTGAAATCAAAGCTTGA-TGAGGTTTCCTTGATGAGGAAGAAAGCAGATGCT 755
Query 2052 GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAA-TT 2110
| | | | |||||| ||| || ||||||||||| |||||||||||||| ||| ||
Sbjct 756 G--A----T--G-TCCAACAACTCGATGAACGTGTTAAAAAACTTGAGCTGAT-GAACTT 805
Query 2111 GGACGATTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGC 2170
| |||||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 806 -G--GATTTGAAAACAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAAATGATGC 862
Query 2171 TTATAGGTCTCGGGTCTACCAACTCGAGGAATGCTTCAAGAACCTTGAGCTGATGGTGTT 2230
| |||||||||||||| | |||||||||||||||||||||||||||||| || |||||||
Sbjct 863 TGATAGGTCTCGGGTCCAACAACTCGAGGAATGCTTCAAGAACCTTGAGATGGTGGTGTT 922
Query 2231 GGATTTCAAAGTTGAACT-GGACAAGAAAAAGGACAAATCTTGTGATGATGGATTTTT-G 2288
|||| |||||||| |||| || |||| | ||| |||||||| || ||||| |||||| |
Sbjct 923 GGATCTCAAAGTTAAACTTGG-CAAGGAGGAGGCCAAATCTTCTGCTGATG-ATTTTTTG 980
Query 2289 TTGGTCGACGAGTT 2302
|||||||||||||
Sbjct 981 CTGGTCGACGAGTT 994
> Ahg902246 jgi|Araly1|902246|Al_scaffold_0004_2896
Length=1788
Score = 220 bits (119), Expect = 3e-56
Identities = 354/461 (77%), Gaps = 42/461 (9%)
Strand=Plus/Plus
Query 79 TGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138
||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||
Sbjct 11 TGTGGAATCAAAAGCCGAGTTTCAGGTTTGAGATAGATAACTTCTCGGAGAAGGAA-AT- 68
Query 139 TG--ATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGAATGGT-TCCTTTACCTCTATC 195
|| || | ||| |||| |||||||||||| ||| |||||||| || | | | ||||
Sbjct 69 TGCCATGGTGTCAAAGGTATTCGTGAGTGGCGGACACGAATGGTATC-TCGGCGTTTATC 127
Query 196 CGAAGGGAC-A-GAGT--C-TTAATGATGATCACATGTCTTTGTATCTGTC-CGTTGCAA 249
||| || || | || | | ||| |||| || || ||||| |||| ||| | || | |||
Sbjct 128 CGATGG-ACGAAGATTATCCTTA-TGATAATTACTTGTCTGTGTACCTG-CACGCTACAA 184
Query 250 ATAGTAAATCC-TTGGGAAGTGGATGG-AAACGGAGTGCTAAATTTTACTT-CT-CTGTG 305
|| |||| || ||||||||||||||| ||| ||| |||||| |||||||| || || |
Sbjct 185 ATTCTAAA-CCATTGGGAAGTGGATGGCAAA-GGACTGCTAATTTTTACTTTCTTCTTT- 241
Query 306 CTGAATGAATCTGACAAAGAACTCTACAGATCA-ACTATTAGCCAAGAATTCTGTCTG-T 363
||||| |||| ||| ||| ||||| |||||| | | || | |||| | | | |
Sbjct 242 -TGAATCAATCCGACCAAGTGCTCTATAGATCATA-TGTT--C-AAGAGCACA-TA-GAT 294
Query 364 TTTGCGTTCAG-G-CTCTAGCCT-GGGGTATCCGAAAGGCTTTGCCTCTTAGCAAGTTTG 420
||| | | ||| | | || | | ||||||||| |||| | |||||||||||| |||
Sbjct 295 TTT-CATGCAGAGTCCCT-GATTTGGGGTATCCAAAAGACCTTGCCTCTTAGCTTTTTTC 352
Query 421 AGGAAAAAGGGTTTTTGGAGAAGGACAAACTCATCGTTGAAGTCTACAT-CAAAAATTTT 479
||||| |||||||| ||||||| ||||||||||| |||||||||||||| |||| || |
Sbjct 353 AGGAAGAAGGGTTTCTGGAGAACGACAAACTCATTGTTGAAGTCTACATTCAAA--TTGT 410
Query 480 -GAAGCAGTGGATGGAGA-AGGCGGAGGTGTATCAAAGAAG 518
||| | | |||||||| || |||| ||||||| |||||
Sbjct 411 AGAATCTTTTGATGGAGAGAGA-GGAGATGTATCAGAGAAG 450
Score = 191 bits (103), Expect = 2e-47
Identities = 258/328 (79%), Gaps = 29/328 (9%)
Strand=Plus/Plus
Query 1993 TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT 2051
|||| || ||||| ||||||||||| | | ||||| | |||| |||||||||||||||
Sbjct 1469 TGGAATGGTTGAAGTCAAAGCTTGA-TGAGGTTTCCTTGAAGAGGAAGAAAGCAGATGCT 1527
Query 2052 GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAATTG 2111
| | | | |||||| ||| || |||||| ||||||| ||||||| |||| |||||
Sbjct 1528 G--A----T--G-TCCAACAACTCGATGAACGTCTTAAGAATCTTGAGCAGATGAAATTG 1578
Query 2112 G------A-C--GA---TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 2159
| | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 GACTTCAAGCTAGACTGTTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 1638
Query 2160 TCAGACGATGCTT-ATAGGT-CTCGGGTCTACCAACTCGA-GGAATGCTTCAAGAACCTT 2216
||||| |||| || || ||| |||| ||| | || | || ||| || ||||||| |||
Sbjct 1639 TCAGATGATG-TTGAT-GGTTCTCGAGTCAAAGAAATGGAAGGAC-GCATCAAGAATCTT 1695
Query 2217 GAGCTGATGGTGTTGGATTTCAAAGTTGAACTGGACAAGAAAAAGGACAAATCTTGTGAT 2276
||| ||||||||| ||| |||||||| || |||||||| | ||| |||||||| || |
Sbjct 1696 GAGATGATGGTGTCAGATCTCAAAGTTAAAATGGACAAGGAGGAGGCCAAATCTTTTGCT 1755
Query 2277 GATGGATTTTTGTTGGTCGACGAGTTTG 2304
||||| ||||||||| |||||||| |||
Sbjct 1756 GATGGTTTTTTGTTGATCGACGAGGTTG 1783
Score = 147 bits (79), Expect = 5e-34
Identities = 234/304 (77%), Gaps = 30/304 (10%)
Strand=Plus/Plus
Query 1993 TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT 2051
|||| || ||||| |||||||||| || | ||||| | |||| |||||| ||||||||
Sbjct 701 TGGAATGGTTGAAGTCAAAGCTTG-GTAAGGTTTCCTTGAAGAGGAAGAAACCAGATGCT 759
Query 2052 GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAATTG 2111
||| ||| | | ||| | | || |||||||||||| || |||| ||||| |||||
Sbjct 760 GAT--GTC-C--A-ACAA--A-TTGATGAACGTGTTAAG-AA--TGAGATGATGAAATTG 807
Query 2112 G------A-C--GA-T--TTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 2159
| | | || | |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 808 GACTTCAAGCTGGACTGCTTGAAGACAAAGATTGAGGAGGTTTCCTTGGAGAGGAAGAAA 867
Query 2160 TCAGACGATGCTTATAGGT-CTCGGGTCTACCAACTCGAGGAATGCTTCAAGAACCTTGA 2218
||||| |||||| || ||| |||| ||| | || | |||| | || ||||||| |||||
Sbjct 868 TCAGATGATGCTGAT-GGTTCTCGAGTCAAAGAAATGGAGGGACGCATCAAGAATCTTGA 926
Query 2219 GCTGATGGTGTTGGATTTCAAAGTTGAACTGG-ACAAGAAAAAGGACAAATCTTGTGATG 2277
| ||||||||| ||| |||||| | |||||| | |||| || || || ||||| |||||
Sbjct 927 GATGATGGTGTCAGATCTCAAAGCTAAACTGGGAAAAGAGAA-GGCCATATCTTCTGATG 985
Query 2278 ATGG 2281
||||
Sbjct 986 ATGG 989
> Ahg943361 jgi|Araly1|943361|scaffold_603905.1
Length=495
Score = 102 bits (55), Expect = 1e-20
Identities = 73/81 (90%), Gaps = 3/81 (4%)
Strand=Plus/Plus
Query 2117 TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTT-ATA 2175
||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 417 TTTGAAGACAAATCTTGAGGAGGTGTCCTTGGAGAGGAAGAAATCAGACGATGCTTGAT- 475
Query 2176 GGTCTCGGGTCTACCAACTCG 2196
| ||||||||| | |||||||
Sbjct 476 G-TCTCGGGTCCAACAACTCG 495
> Ahg937876 jgi|Araly1|937876|scaffold_502067.1
Length=495
Score = 102 bits (55), Expect = 1e-20
Identities = 73/81 (90%), Gaps = 3/81 (4%)
Strand=Plus/Plus
Query 2117 TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTT-ATA 2175
||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 417 TTTGAAGACAAATCTTGAGGAGGTGTCCTTGGAGAGGAAGAAATCAGACGATGCTTGAT- 475
Query 2176 GGTCTCGGGTCTACCAACTCG 2196
| ||||||||| | |||||||
Sbjct 476 G-TCTCGGGTCCAACAACTCG 495
> Ahg924972 jgi|Araly1|924972|scaffold_200533.1
Length=905
Score = 97.1 bits (52), Expect = 5e-19
Identities = 110/137 (80%), Gaps = 8/137 (6%)
Strand=Plus/Plus
Query 2121 AAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTTATAGGTCT 2180
||| ||||||||||||||||||||||||||||||||||| || | |||| ||| |||
Sbjct 693 AAGACAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAAGCA-AT--TGCTGATAA-TCT 748
Query 2181 CGG-GTCTACCAACTCGAGGAATGCTTCAAGAACCTTGAGCTGATGGT-GTTGGATTTCA 2238
||| ||| | || | |||||| || ||||||| | ||||||| | | || |||| |||
Sbjct 749 CGGAGTCCAAGAATTGGAGGAACGCGTCAAGAATATGGAGCTGA-GTTTGTCGGATCTCA 807
Query 2239 AAGTTGAACTGGACAAG 2255
|||||||||| || |||
Sbjct 808 AAGTTGAACTTGA-AAG 823
> Ahg887366 jgi|Araly1|887366|Al_scaffold_0034_1
Length=450
Score = 87.9 bits (47), Expect = 3e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2117 TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTT 2172
||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 393 TTTGAAGACAAATCTTGAGGAGGTGTCCTTGGAGAGGAAGAAATCAGACGATGCTT 448
> Ahg346045 jgi|Araly1|346045|fgenesh1_pg.C_scaffold_4002387
Length=882
Score = 82.4 bits (44), Expect = 1e-14
Identities = 289/402 (72%), Gaps = 37/402 (9%)
Strand=Plus/Plus
Query 82 GGAATCAAAAGC---CGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138
|||||||||||| | |||| | |||||||||||||||||||||||||||||||| ||
Sbjct 38 GGAATCAAAAGCAGACAAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGAAAGCTG 97
Query 139 TGATAGCGTCTAAGGCATTCGTGA-GTGGAGGATGCGAATGGT-TCCTTTACC-TCTATC 195
|||| ||||| ||||| | | || ||||||||||||| | || ||| | ||||
Sbjct 98 CGATATCGTCTTCTTTATTCG-GCTGCGGCGGATGCGAATGGTATG-TT-ACCGTTTATC 154
Query 196 CGAAGGGACAGAGTCTTAAT-GATGATCACATGTCTTTGTATCT-GTCCGTTGCAAATAG 253
| |||||| | | || | | ||||||| || || || |||| | ||||| | |
Sbjct 155 CCAAGGGATAC--TATTG-TCG-TGATCACTTGGCTGTG-ATCTTGAATGTTGCTAGTCC 209
Query 254 TAAATCCTTGGGAAGTGGATGGAAACGGAGTGCTAAATT-TTACTTC-TCTGTGCTGAAT 311
|||||| ||| ||| |||||||||| | | | || | || |||| | | || |||||
Sbjct 210 TAAATCATTGAGAACTGGATGGAAAAGAAAAGTTAG-TCCTTGCTTCGTTT-TGTTGAAT 267
Query 312 GAATCTGACAAAGAACTCTACAGATCAACTA--T-T-A-GCCAAGAATTCTGTCT-GTTT 365
| || | |||||| ||| | | || || || | | | | ||||| | | || |||
Sbjct 268 CAGTCCGGCAAAGAGCTCCAAATATTAAGTACATCTGAAG--AAGAAGGCAG-CTTGTTC 324
Query 366 TGCGTTCAGG-CTCTAGCCTGGGGT-ATC-CGAAAGGCTTTGCCTCTTAGCAAGTTTG-A 421
|| | | ||| | | | |||||||| ||| | |||| || ||||||||||||| || |
Sbjct 325 TGTGATAAGGTCCC-ATCCTGGGGTTATCAC-AAAGTATT-GCCTCTTAGCAAGCTTACA 381
Query 422 GGAAAAAGGGTTTTTGGAGAAGGACAAACTCATCGTTGAAGT 463
| || ||| |||||| ||||| |||||| | ||| || ||||
Sbjct 382 G-AAGAAGAGTTTTTAGAGAATGACAAATTGATCATTAAAGT 422
> Ahg346044 jgi|Araly1|346044|fgenesh1_pg.C_scaffold_4002386
Length=906
Score = 67.6 bits (36), Expect = 4e-10
Identities = 60/71 (85%), Gaps = 3/71 (4%)
Strand=Plus/Plus
Query 82 GGAATCAAAAGC---CGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138
|||| ||||||| || |||| | |||||||||||||||||||||||||||| ||| ||
Sbjct 38 GGAACCAAAAGCAAACGAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGGAAGCTG 97
Query 139 TGATAGCGTCT 149
|||| |||||
Sbjct 98 AGATATCGTCT 108
> Ahg321927 jgi|Araly1|321927|fgenesh1_pm.C_scaffold_4001984
Length=2649
Score = 67.6 bits (36), Expect = 4e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 2125 CAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAG 2163
||||||||||||||||||||||||||||||||||| |||
Sbjct 1250 CAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAAGCAG 1288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86960029335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5