BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42480.1 Length=2309 Score E Sequences producing significant alignments: (Bits) Value Ahg321928 jgi|Araly1|321928|fgenesh1_pm.C_scaffold_4001985 942 0.0 Ahg935128 jgi|Araly1|935128|scaffold_403116.1 309 6e-83 Ahg935131 jgi|Araly1|935131|scaffold_403119.1 279 5e-74 Ahg902246 jgi|Araly1|902246|Al_scaffold_0004_2896 220 3e-56 Ahg943361 jgi|Araly1|943361|scaffold_603905.1 102 1e-20 Ahg937876 jgi|Araly1|937876|scaffold_502067.1 102 1e-20 Ahg924972 jgi|Araly1|924972|scaffold_200533.1 97.1 5e-19 Ahg887366 jgi|Araly1|887366|Al_scaffold_0034_1 87.9 3e-16 Ahg346045 jgi|Araly1|346045|fgenesh1_pg.C_scaffold_4002387 82.4 1e-14 Ahg346044 jgi|Araly1|346044|fgenesh1_pg.C_scaffold_4002386 67.6 4e-10 Ahg321927 jgi|Araly1|321927|fgenesh1_pm.C_scaffold_4001984 67.6 4e-10 > Ahg321928 jgi|Araly1|321928|fgenesh1_pm.C_scaffold_4001985 Length=2229 Score = 942 bits (510), Expect = 0.0 Identities = 692/776 (89%), Gaps = 27/776 (3%) Strand=Plus/Plus Query 78 ATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGAT 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGAT 60 Query 138 GTGATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGAATGGTTCCTTTACCTCTATCCG 197 |||||||||| |||||||||||||||| ||||||||||||||| | ||||||||| | Sbjct 61 ACGATAGCGTCTCAGGCATTCGTGAGTGGCGGATGCGAATGGTTCATCTACCTCTATTC- 119 Query 198 AAGGGACAGAGTCTTAATGATGATCACATGTCTTTGTAT-CTGTCCGTTGCAAATAGTAA 256 || || | | ||| ||||||||||||| | || | |||||||||| ||| Sbjct 120 ---GG--AG-G-------G-TGACCACATGTCTTTGT-TCCTATACGTTGCAAATCGTAC 164 Query 257 ATCCTTGGGAAGTGGATGGAAACGGAGTGCTAAATTTTACTTCTCTGTGCTGAATGAATC 316 ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| Sbjct 165 ATCATTGGGAAGTGGATGGAAACGGAGTGCTAACTTTTACTTCTCTGTTCTGAATCAATC 224 Query 317 TGACAAAGAACTCTACAGATCAACTATTAGCCAAGAATTCTGTCTGTTTTGCGTTCAGGC 376 ||| ||||| |||||||||||| || || | |||||| || | ||||| ||||| ||| Sbjct 225 TGAAAAAGAGCTCTACAGATCACCTGTTGGACAAGAACCCTATTTGTTTCGCGTTGAGGG 284 Query 377 TCTAGCCTGGGGTATCCGAAAGGCT-TTGCCTCTTAGCAAGTTTGAGGAAAAAGGGTTTT 435 || || ||||||| ||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 285 TCCAGGCTGGGGTTTCCGAAA-GATCTTGCCTCTTAGCAAGTTTGAGGAAAAAGGGTTTT 343 Query 436 TGGAGAAGGACAAACTCATCGTTGAAGTCTACATCAAAAATT-TTGAAGCAGTGGATGGA 494 |||||||||||| ||||||| |||||||||||||| ||| || ||||||| ||||| ||| Sbjct 344 TGGAGAAGGACAGACTCATCATTGAAGTCTACATC-AAAGTTGTTGAAGCTGTGGACGGA 402 Query 495 GAAGGCGGAGGTGTATCAAAGAAGGAGGAGGAGGAGACTGTCGAGATTATCGGTTCCCAG 554 ||||||||||| ||||||||||| || | | |||||||| || |||||| |||| || Sbjct 403 GAAGGCGGAGGCGTATCAAAGAA-GA--A--A-GAGACTGTGGATATTATCAATTCCGAG 456 Query 555 GATTATGCTTCTCAGGCAAGTTTCAAAGGATCCGTTACTTTAGTGAGAAAGATATTCGCA 614 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 457 GATTATGCTTCTCAGGCAAGTTTAAAAGGATCCGTTACTTTAATGAGAAAGATATTCGCA 516 Query 615 GAGCACCCAGAAATTGCAGAAGAGTTCAAACCAAAGAACCAAGTGTTCAAGAAAGAATAC 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 GAGCACCCAGAAATTGCAGAAGAGTTCAAACCAAAGAACCAAGTGTTCAAGAAAGAATAC 576 Query 675 ATGAATATCCTAAGAAACGCTTACCGCAAGGTTAGTGAGCTAGCGGAAGTAAAGATGGAC 734 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 577 ATGAATATCCTAAGAAACGCTTACAGCAAGGTTAGTGAGCTAGCGGAAGTAAAGATGGAC 636 Query 735 TGGGTGAAGTCAAAGATTGAAGAAGTTTCCTTGGAGATAAAGAAACGAAATGATGAGGTT 794 ||||||||||||||||||| |||||||||||||||| ||||||| || || ||||| | Sbjct 637 TGGGTGAAGTCAAAGATTGGTGAAGTTTCCTTGGAGAGAAAGAAAGGATATCATGAGACT 696 Query 795 AGTGAAGTTCCCTTGGATAATAAGATAGCAgatgatgatgatgatgattatgatga 850 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 697 AGTGAAGTTCCCTTGGATAATAAGATAGCAGATGAAGATGATGATGATGATGATGA 752 Score = 708 bits (383), Expect = 0.0 Identities = 482/529 (91%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 1781 TGAGGTTTCCTTGAAGGACAAGAAACGAGATGATGCTGATGAGTCTCGGTTCCAAAAACT 1840 ||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |||| Sbjct 1707 TGAGGTTTCCTTGAAGGGCAAGAAACGAGATGATGCTGATGGGTCTCGGCTCCAACAACT 1766 Query 1841 AGAGGAACGCCTCAAGAATCTCGAGTTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGA 1900 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1767 AGAGGAACGCCTCAAGAATCTTGAGTTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGA 1826 Query 1901 GGAAGTTTCGATAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGGTCCAACGACTAGA 1960 |||||||||| | | || |||||||||||||||||| |||||||||||||| |||||| Sbjct 1827 GGAAGTTTCGTTGGACAAGAAGAAAGCAGATGCTGATTTGTCTCGGGTCCAACAACTAGA 1886 Query 1961 GGAACGCCTCAAGAATCTTGAGCTAATGGATTTGGACTGTTTGAAATCAAAGCTTGAGTT 2020 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1887 GGAACGCCTCAAGAATCTTGAGCTGATGGAGTTGGACTGTTTGAAATCAAAGCTTGAGGA 1946 Query 2021 AGTTTCGA-TAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGATCCAACGACTAGAGG 2079 |||||| | | |||||||||||||| |||||||| |||||||| |||||| ||| |||| Sbjct 1947 AGTTTC-ATTGGAGAATAAGAAAGCAAATGCTGATTGGTCTCGGGTCCAACAACTCGAGG 2005 Query 2080 AACGTGTTAAGAAACTTGAGCTGATGGAATTGGAC-GATTTGAAGTCAAAGCTTGAGGAG 2138 ||| | | || |||||||| |||||||||||| | |||||||||||||||||||||| Sbjct 2006 AAC--G-T---AATCTTGAGCTTATGGAATTGGACTG-TTTGAAGTCAAAGCTTGAGGAG 2058 Query 2139 GTTTCCTTGGAGAGGAAGAAATCAGACGATGCTTATAGGTCTCGGGTCTACCAACTCGAG 2198 |||| ||||||||| |||||||||||||||| | |||||||||||||| | ||| ||||| Sbjct 2059 GTTTTCTTGGAGAGAAAGAAATCAGACGATGATGATAGGTCTCGGGTCCAACAAATCGAG 2118 Query 2199 GAATGCTTCAAGAACCTTGAGCTGATGGTGTTGGATTTCAAAGTTGAACTGGACAAGAAA 2258 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 2119 CAATGCTTCAAGAACCTTGAGCTGATGGTGTTGGACCTCAAAGTTGAACTGGACAAAAAA 2178 Query 2259 AAGGACAAATCTTGTGATGATGGATTTTTGTTGGTCGACGAGTTTGCTT 2307 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2179 AAGGACAAATCTTGTGATGATGGATTTTTGTTGGTCGACGAGTTTGCTT 2227 Score = 538 bits (291), Expect = 7e-152 Identities = 408/464 (88%), Gaps = 10/464 (2%) Strand=Plus/Plus Query 1235 GAATCATCAGAAGACGA---GTTTCACCTTTGAGATAGAAAACTTTTCAGAGAGGAAATA 1291 ||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| Sbjct 1182 GAATCATCAGAAGACGAGTTGTTTCACCTTTGAGATAGATAACTTTTCCGAGAAGAAATA 1241 Query 1292 TTTGATATG-GTCTCCTATATTCATAAGCGGCCAATGCCATTGGTTTGTTAAAGTTTATC 1350 | ||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1242 TGTGATA-GCGTCTCCTATATTCATAAGCGGCCAATGCCAATGGTTTGTTAAAGTTTATA 1300 Query 1351 CGA-TAAAAGACAATAACTACGATCACGTGTCTGTGTATCTGCACGTTGCGAATCCTCAA 1409 ||| | | || |||| | |||||||||||||| ||||| |||||||||||||||||| Sbjct 1301 CGAATGGAT-ACTTTAACAAAGATCACGTGTCTGTATATCTTCACGTTGCGAATCCTCAA 1359 Query 1410 TCACTACGACCTGGATGGAAAAGGAGAGCTCATTTTTCATTGATTCTGTCTAATCAATCA 1469 ||| |||||||||||||||||||||||| | ||| |||||| | ||||| |||||||||| Sbjct 1360 TCATTACGACCTGGATGGAAAAGGAGAGTTAATTATTCATTCACTCTGTTTAATCAATCA 1419 Query 1470 GGCAAAGAGGTCAAAATACCATCTGATTCATGCGACTTGTTCTGCACTGAGTTGTCATC- 1528 ||||||||| || ||| | || |||| ||||||||| |||||||||||||| | ||| | Sbjct 1420 GGCAAAGAGCTCCAAAGAACACCTGAATCATGCGACCTGTTCTGCACTGAGGTCTCAGCC 1479 Query 1529 -GAG-TTATCCCAAAATATTGCCTCCTATCAAGCTTAAAGAAGAAGGGTTTTTGGAGAAC 1586 | | |||||||||| ||||||||| || |||||||||||||||||||||||| |||||| Sbjct 1480 TGGGGTTATCCCAAACTATTGCCTCTTAGCAAGCTTAAAGAAGAAGGGTTTTTAGAGAAC 1539 Query 1587 GACAAACTGATCATTACGGTGGAAGTAAAAGTAGTTGAAGTTGTTCATCCAGGAGAGTTA 1646 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || Sbjct 1540 GACAAACTGATCATTAAGGTGGAAGTAAAAGTAGTTGAAGTTGTTCATGTAGGAGAGGTA 1599 Query 1647 ACTGGGAAGGAGATGGTAGAATTCAAGGAATTACAGGATCTTTA 1690 |||||||||||||||||||| ||||||| || |||| |||||| Sbjct 1600 ACTGGGAAGGAGATGGTAGATTTCAAGGGTTTCCAGGTTCTTTA 1643 Score = 296 bits (160), Expect = 5e-79 Identities = 237/274 (86%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 1929 GATGCTGATAGGTCTCGGGTCCAACGACTAGAGGAACGCCTCAAGAATCTTGAGCTAATG 1988 ||||||||| |||||||| |||||| |||||||||||||||||||||||||||| | ||| Sbjct 1738 GATGCTGATGGGTCTCGGCTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGTTGATG 1797 Query 1989 GATTTGGACTGTTTGAAATCAAAGCTTGAGTTAGTTTCGATAAAGAATAAGAAAGCAGAT 2048 || ||||||||||||||||||||||||||| ||||||| | | || |||||||||||| Sbjct 1798 GAGTTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGTTGGACAAGAAGAAAGCAGAT 1857 Query 2049 GCTGATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAA 2108 |||||| ||||||| |||||| |||||||||||| | ||||| |||||||||||||| Sbjct 1858 GCTGATTTGTCTCGGGTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGCTGATGGAG 1917 Query 2109 TTGGAC-GATTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGA 2167 |||||| | |||||| |||||||||||||| ||||| ||||||| |||||| || | | Sbjct 1918 TTGGACTG-TTTGAAATCAAAGCTTGAGGAAGTTTCATTGGAGAATAAGAAAGCA-A--A 1973 Query 2168 TGCTTATAGGTCTCGGGTCTACCAACTCGAGGAA 2201 |||| || ||||||||||| | |||||||||||| Sbjct 1974 TGCTGATTGGTCTCGGGTCCAACAACTCGAGGAA 2007 Score = 291 bits (157), Expect = 2e-77 Identities = 302/368 (82%), Gaps = 26/368 (7%) Strand=Plus/Plus Query 1757 GGACAGTTTGAAGTCAAATCATCATGAGGTTTCCTTGAAGGACAAGAA-ACGAG-ATGAT 1814 |||| ||||||| ||||| | | | || ||||| || ||||||||| | || | ||| Sbjct 1803 GGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGTT---GGACAAGAAGA-AAGCA-GAT 1857 Query 1815 GCTGATGAGTCTCGGTTCCAAAAACTAGAGGAACGCCTCAAGAATCTCGAGTTGATGGAG 1874 |||||| ||||||| ||||| ||||||||||||||||||||||||| ||| |||||||| Sbjct 1858 GCTGATTTGTCTCGGGTCCAACAACTAGAGGAACGCCTCAAGAATCTTGAGCTGATGGAG 1917 Query 1875 TTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTCGATAA-AGAATAAGAAAGCAGATGC 1933 ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct 1918 TTGGACTGTTTGAAATCAAAGCTTGAGGAAGTTTC-ATTGGAGAATAAGAAAGCAAATGC 1976 Query 1934 TGATAGGTCTCGGGTCCAACGACTAGAGGAACGCCTCAAGAATCTTGAGCTAATGGATTT 1993 |||| ||||||||||||||| ||| |||||||| | || ||||||||| ||||| || Sbjct 1977 TGATTGGTCTCGGGTCCAACAACTCGAGGAACG--T-AA---TCTTGAGCTTATGGAATT 2030 Query 1994 GGACTGTTTGAAATCAAAGCTTGAGTTAG-TTT-CGATAAAGA-ATAAGAAAGCAGA--- 2047 |||||||||||| |||||||||||| || ||| | | ||| | |||||| |||| Sbjct 2031 GGACTGTTTGAAGTCAAAGCTTGAGG-AGGTTTTCT-TGGAGAGA-AAGAAATCAGACGA 2087 Query 2048 TGCTGATAGGTCTCGGATCCAACGACTAGAGGAACGTGTT-AAGAAACTTGAGCTGATGG 2106 || ||||||||||||| |||||| | | ||| || | || ||||| ||||||||||||| Sbjct 2088 TGATGATAGGTCTCGGGTCCAACAAATCGAGCAATGC-TTCAAGAACCTTGAGCTGATGG 2146 Query 2107 AATTGGAC 2114 |||||| Sbjct 2147 TGTTGGAC 2154 Score = 289 bits (156), Expect = 8e-77 Identities = 190/206 (92%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 825 gatgatgatgatgatgattatgatgaA---TGGGAGCAAGACATCGAGGAACGCCTCAAG 881 |||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||| Sbjct 763 GATGATGATGATGATGATGATGATGAATCTTGGGCCCAAGACCTCGAGGAACGCCTCAAG 822 Query 882 AATCTTGAGGGGATGGAATTTGACTCCAAGTTGGACAGTTTGAAGTCAAAGCTTGATGAA 941 ||||| ||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||| Sbjct 823 AATCTCGAGGGGATGGAATTTGACTTCAAGATGGACTGTTTGAAGTCAAAACTTGATGAA 882 Query 942 ATTTCCTTAGAGAGGAAGAAATCATATGATGCTGATGGGTCTCGGGTCCAGCAACTCGAG 1001 ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| Sbjct 883 ATTTCCTTAGAGAGGAAGATATCATATGATGCTGATCGGTCTCGGTTCCAGCAACTCGAG 942 Query 1002 GAACGAGTCAAGGATATTGAGCTGAT 1027 ||||||||||||||| |||||||||| Sbjct 943 GAACGAGTCAAGGATCTTGAGCTGAT 968 Score = 206 bits (111), Expect = 8e-52 Identities = 154/172 (90%), Gaps = 13/172 (8%) Strand=Plus/Plus Query 1031 GAAGTCAAAGCTTGAGGAAGTTTCCTCGGAGAAGAAGAAGAAAGCAGATGCTGATGGG-- 1088 ||| |||||||||||||||||||| | |||||||||||||| ||||||||||||||| Sbjct 1012 GAA-TCAAAGCTTGAGGAAGTTTCTTTGGAGAAGAAGAAGACTGCAGATGCTGATGGGTC 1070 Query 1089 TC---T-------CTAGAGGATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAA 1138 || | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1071 TCAGGTCCAAGAACTAGAGGATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAA 1130 Query 1139 AGTTGAAGTGGACAACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTG 1190 ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 AGTTGAACTGGACAACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTG 1182 > Ahg935128 jgi|Araly1|935128|scaffold_403116.1 Length=1154 Score = 309 bits (167), Expect = 6e-83 Identities = 386/488 (79%), Gaps = 29/488 (6%) Strand=Plus/Plus Query 56 ACGAAAGCGTTTTTGGTCAGCTATGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGA 115 ||||||||| |||| ||| ||||||||||||||||||| ||| || ||||||||||| Sbjct 1 ACGAAAGCG-TTTTCATCAAATATGTGGAATCAAAAGCCGAGTTACAGATTTGAGATAGA 59 Query 116 TAACTTCTCGGAGAAGAAAGATGTGATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGA 175 ||||||||||||||||||| ||| ||| ||||| ||| |||||||| || |||||||| Sbjct 60 TAACTTCTCGGAGAAGAAATCTGTCATAACGTCTCAGGTGTTCGTGAGCGGCGGATGCGA 119 Query 176 ATGGT-TCCTTTACCTCTATCCGAAGGGACA-G-AGTC-TTAA--T-GATGATCACATGT 228 ||||| || | | || ||||| |||||| | | ||| |||| | |||||| || ||| Sbjct 120 ATGGTGTC-TCAAACTTTATCCAAAGGGAGATGGAGTTGTTAAACTTGATGATTACTTGT 178 Query 229 CTTTGTATC-TGTCCGTTGCAAATAGTAAATCCTTGGGAAGTGGATGGAAACGGAGTGCT 287 ||||||| | || |||||||||| |||||| ||| |||||||||||||| ||| |||| Sbjct 179 CTTTGTA-CGTGAACGTTGCAAATCCTAAATCTTTGAGAAGTGGATGGAAAAGGATTGCT 237 Query 288 AAATTTTACTTCTCT-GTGCTGAATGAATCTGACAAAGAACTCTACAGATCAACTATT-- 344 || ||||||||| || ||| ||||| |||| |||||||| |||||||||||| | ||| Sbjct 238 AACTTTTACTTC-CTTGTGTTGAATCAATCCGACAAAGAGCTCTACAGATCACCAATTGG 296 Query 345 AGC-CAAGAATTCTGTCTGTTTTGCGTTCAG-GCTCTAGCCTGGGGTATC-CGAAAGG-C 400 || |||||| | | |||||||| | || | || | |||||||| | ||| | | Sbjct 297 AGGACAAGAAAGCACCCCGTTTTGCGCTGAGAG-TCCATCCTGGGGT-TGGCGATATTTC 354 Query 401 TTTGCCTCTTAGCAAGTTTGAGGAAAA-AGGGTTTTTGGAGAAGGACAAACTCATCGTTG 459 || | |||||||||||||| || |||| ||| |||||||| | |||| ||||||| ||| Sbjct 355 TT-GTCTCTTAGCAAGTTTCAG-AAAACAGGACTTTTGGAGGACGACAGACTCATCATTG 412 Query 460 AAGTCTACATCAAAAATT-TTGAAGCAGTGGATGGAGAAGGCGGAGGTGTATCA--A-AG 515 |||||||||| || | || ||||||| | |||||||||| | || ||||||| | || Sbjct 413 AAGTCTACATTAATA-TTGTTGAAGCTTTTGATGGAGAAGAAGAAGATGTATCATCAGAG 471 Query 516 AAGGAGGA 523 |||||||| Sbjct 472 AAGGAGGA 479 Score = 215 bits (116), Expect = 1e-54 Identities = 274/343 (80%), Gaps = 40/343 (12%) Strand=Plus/Plus Query 885 CTTGAG-GGGATGGAATTT-GACTCCAAGTTGGACAGTTTGAAGTCAAAGCTTGATGAAA 942 |||||| || ||| |||| |||| ||| ||||| ||||||| ||||| |||| || Sbjct 796 CTTGAGCCGG-TGG-ATTTGGACTTTAAGATGGACCCTTTGAAGACAAAGATTGAGGAGG 853 Query 943 TTTCCTTAGAGAGGAAGAAATCATATGATGCTGATGGGTCTCGGGTCCAGCAACTCGAGG 1002 || |||| ||||||||||||||| ||||||||||| |||||||||| || ||||| |||| Sbjct 854 TTCCCTTGGAGAGGAAGAAATCAGATGATGCTGATTGGTCTCGGGTACATCAACTAGAGG 913 Query 1003 AACG-----AG----TC-A----A-GG-A-T--A-TTG-AGCT-GA-T-TTTGAAGTCAA 1038 |||| || || | | || | | | ||| || | || | ||||||||||| Sbjct 914 AACGCCTCAAGAATCTCGAGCTGATGGAATTGGACTTGAAGTTGGACTGTTTGAAGTCAA 973 Query 1039 AGCTTGAGGAAGTTTCCTCGGAGAAGAAGAAGAAAGCAGATGCTGATGGGTCT--C---T 1093 ||||||||||||||||| | | || |||||||||||||||||||| ||||| | | Sbjct 974 AGCTTGAGGAAGTTTCC-CTG-GA-GAAGAAGAAAGCAGATGCTG--GGGTCCAACAACT 1028 Query 1094 AGAGG-ATAGAGTGAAGAATCTTGAGCTAATGGTGTCAGATCTCAAAGTTGAAGTGGACA 1152 ||||| | || || ||||||| || | |||||||||| ||||||||||||||| |||||| Sbjct 1029 AGAGGGA-AGCGTCAAGAATCATGTGATAATGGTGTCGGATCTCAAAGTTGAACTGGACA 1087 Query 1153 ACGAGAAGGCCAAATCTTCTGCTGATGGATTTTTGTTGGTTGA 1195 ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1088 ACGAGAAGGCCAAATCTTCCGCTGATGGATTTTTGTTGGTTGA 1130 Score = 134 bits (72), Expect = 4e-30 Identities = 216/279 (77%), Gaps = 35/279 (13%) Strand=Plus/Plus Query 1730 TGAGCTGATGAATATGGACATGAAGCA-GGACAGTTTGAAGTCAAATCA-TCATGAGGTT 1787 ||||| | || || ||||| | ||| | |||| ||||||| |||| | | | |||||| Sbjct 798 TGAGCCGGTGGATTTGGACTTTAAG-ATGGACCCTTTGAAGACAAA-GATTGAGGAGGTT 855 Query 1788 TCCTT-GA-AGGACAAGAAA-CGAGATGATGCTGA-TGAGTCTCGGTTCCAAAAACTAGA 1843 |||| || ||| |||||| | |||||||||||| || ||||||| | || ||||||| Sbjct 856 CCCTTGGAGAGG--AAGAAATC-AGATGATGCTGATTG-GTCTCGGGTACATCAACTAGA 911 Query 1844 GGAACGCCTCAAGAATCTCGAG-T--TG-A-T-GGA---G---TTGGACTGTTTGAAATC 1891 |||||||||||||||||||||| | || | | ||| | |||||||||||||| || Sbjct 912 GGAACGCCTCAAGAATCTCGAGCTGATGGAATTGGACTTGAAGTTGGACTGTTTGAAGTC 971 Query 1892 AAAGCTTGAGGAAGTTTCGATAAAGAATAAGAAAGCAGATGCTGATAGGTCTCGGGTCCA 1951 |||||||||||||||||| | |||| |||||||||||||||| || | |||| Sbjct 972 AAAGCTTGAGGAAGTTTCCCTGGAGAAGAAGAAAGCAGATGCTG---GG----G--TCCA 1022 Query 1952 ACGACTAGAGG-AACGCCTCAAGAATCTTGAGCTAATGG 1989 || |||||||| || || ||||||||| || | |||||| Sbjct 1023 ACAACTAGAGGGAA-GCGTCAAGAATCATGTGATAATGG 1060 > Ahg935131 jgi|Araly1|935131|scaffold_403119.1 Length=1093 Score = 279 bits (151), Expect = 5e-74 Identities = 263/314 (84%), Gaps = 20/314 (6%) Strand=Plus/Plus Query 1993 TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT 2051 |||| || ||||||||||||||||| | | ||||| | | || ||||||||||||||| Sbjct 697 TGGAATGGTTGAAATCAAAGCTTGA-TGAGGTTTCCTTGATGAGGAAGAAAGCAGATGCT 755 Query 2052 GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAA-TT 2110 | | | | |||||| ||| || ||||||||||| |||||||||||||| ||| || Sbjct 756 G--A----T--G-TCCAACAACTCGATGAACGTGTTAAAAAACTTGAGCTGAT-GAACTT 805 Query 2111 GGACGATTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGC 2170 | |||||||| |||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 806 -G--GATTTGAAAACAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAAATGATGC 862 Query 2171 TTATAGGTCTCGGGTCTACCAACTCGAGGAATGCTTCAAGAACCTTGAGCTGATGGTGTT 2230 | |||||||||||||| | |||||||||||||||||||||||||||||| || ||||||| Sbjct 863 TGATAGGTCTCGGGTCCAACAACTCGAGGAATGCTTCAAGAACCTTGAGATGGTGGTGTT 922 Query 2231 GGATTTCAAAGTTGAACT-GGACAAGAAAAAGGACAAATCTTGTGATGATGGATTTTT-G 2288 |||| |||||||| |||| || |||| | ||| |||||||| || ||||| |||||| | Sbjct 923 GGATCTCAAAGTTAAACTTGG-CAAGGAGGAGGCCAAATCTTCTGCTGATG-ATTTTTTG 980 Query 2289 TTGGTCGACGAGTT 2302 ||||||||||||| Sbjct 981 CTGGTCGACGAGTT 994 > Ahg902246 jgi|Araly1|902246|Al_scaffold_0004_2896 Length=1788 Score = 220 bits (119), Expect = 3e-56 Identities = 354/461 (77%), Gaps = 42/461 (9%) Strand=Plus/Plus Query 79 TGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138 ||||||||||||||||| |||| |||||||||||||||||||||||||||||| || || Sbjct 11 TGTGGAATCAAAAGCCGAGTTTCAGGTTTGAGATAGATAACTTCTCGGAGAAGGAA-AT- 68 Query 139 TG--ATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGAATGGT-TCCTTTACCTCTATC 195 || || | ||| |||| |||||||||||| ||| |||||||| || | | | |||| Sbjct 69 TGCCATGGTGTCAAAGGTATTCGTGAGTGGCGGACACGAATGGTATC-TCGGCGTTTATC 127 Query 196 CGAAGGGAC-A-GAGT--C-TTAATGATGATCACATGTCTTTGTATCTGTC-CGTTGCAA 249 ||| || || | || | | ||| |||| || || ||||| |||| ||| | || | ||| Sbjct 128 CGATGG-ACGAAGATTATCCTTA-TGATAATTACTTGTCTGTGTACCTG-CACGCTACAA 184 Query 250 ATAGTAAATCC-TTGGGAAGTGGATGG-AAACGGAGTGCTAAATTTTACTT-CT-CTGTG 305 || |||| || ||||||||||||||| ||| ||| |||||| |||||||| || || | Sbjct 185 ATTCTAAA-CCATTGGGAAGTGGATGGCAAA-GGACTGCTAATTTTTACTTTCTTCTTT- 241 Query 306 CTGAATGAATCTGACAAAGAACTCTACAGATCA-ACTATTAGCCAAGAATTCTGTCTG-T 363 ||||| |||| ||| ||| ||||| |||||| | | || | |||| | | | | Sbjct 242 -TGAATCAATCCGACCAAGTGCTCTATAGATCATA-TGTT--C-AAGAGCACA-TA-GAT 294 Query 364 TTTGCGTTCAG-G-CTCTAGCCT-GGGGTATCCGAAAGGCTTTGCCTCTTAGCAAGTTTG 420 ||| | | ||| | | || | | ||||||||| |||| | |||||||||||| ||| Sbjct 295 TTT-CATGCAGAGTCCCT-GATTTGGGGTATCCAAAAGACCTTGCCTCTTAGCTTTTTTC 352 Query 421 AGGAAAAAGGGTTTTTGGAGAAGGACAAACTCATCGTTGAAGTCTACAT-CAAAAATTTT 479 ||||| |||||||| ||||||| ||||||||||| |||||||||||||| |||| || | Sbjct 353 AGGAAGAAGGGTTTCTGGAGAACGACAAACTCATTGTTGAAGTCTACATTCAAA--TTGT 410 Query 480 -GAAGCAGTGGATGGAGA-AGGCGGAGGTGTATCAAAGAAG 518 ||| | | |||||||| || |||| ||||||| ||||| Sbjct 411 AGAATCTTTTGATGGAGAGAGA-GGAGATGTATCAGAGAAG 450 Score = 191 bits (103), Expect = 2e-47 Identities = 258/328 (79%), Gaps = 29/328 (9%) Strand=Plus/Plus Query 1993 TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT 2051 |||| || ||||| ||||||||||| | | ||||| | |||| ||||||||||||||| Sbjct 1469 TGGAATGGTTGAAGTCAAAGCTTGA-TGAGGTTTCCTTGAAGAGGAAGAAAGCAGATGCT 1527 Query 2052 GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAATTG 2111 | | | | |||||| ||| || |||||| ||||||| ||||||| |||| ||||| Sbjct 1528 G--A----T--G-TCCAACAACTCGATGAACGTCTTAAGAATCTTGAGCAGATGAAATTG 1578 Query 2112 G------A-C--GA---TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 2159 | | | || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1579 GACTTCAAGCTAGACTGTTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 1638 Query 2160 TCAGACGATGCTT-ATAGGT-CTCGGGTCTACCAACTCGA-GGAATGCTTCAAGAACCTT 2216 ||||| |||| || || ||| |||| ||| | || | || ||| || ||||||| ||| Sbjct 1639 TCAGATGATG-TTGAT-GGTTCTCGAGTCAAAGAAATGGAAGGAC-GCATCAAGAATCTT 1695 Query 2217 GAGCTGATGGTGTTGGATTTCAAAGTTGAACTGGACAAGAAAAAGGACAAATCTTGTGAT 2276 ||| ||||||||| ||| |||||||| || |||||||| | ||| |||||||| || | Sbjct 1696 GAGATGATGGTGTCAGATCTCAAAGTTAAAATGGACAAGGAGGAGGCCAAATCTTTTGCT 1755 Query 2277 GATGGATTTTTGTTGGTCGACGAGTTTG 2304 ||||| ||||||||| |||||||| ||| Sbjct 1756 GATGGTTTTTTGTTGATCGACGAGGTTG 1783 Score = 147 bits (79), Expect = 5e-34 Identities = 234/304 (77%), Gaps = 30/304 (10%) Strand=Plus/Plus Query 1993 TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT 2051 |||| || ||||| |||||||||| || | ||||| | |||| |||||| |||||||| Sbjct 701 TGGAATGGTTGAAGTCAAAGCTTG-GTAAGGTTTCCTTGAAGAGGAAGAAACCAGATGCT 759 Query 2052 GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAATTG 2111 ||| ||| | | ||| | | || |||||||||||| || |||| ||||| ||||| Sbjct 760 GAT--GTC-C--A-ACAA--A-TTGATGAACGTGTTAAG-AA--TGAGATGATGAAATTG 807 Query 2112 G------A-C--GA-T--TTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 2159 | | | || | |||||| ||||| ||||||||||||||||||||||||||||| Sbjct 808 GACTTCAAGCTGGACTGCTTGAAGACAAAGATTGAGGAGGTTTCCTTGGAGAGGAAGAAA 867 Query 2160 TCAGACGATGCTTATAGGT-CTCGGGTCTACCAACTCGAGGAATGCTTCAAGAACCTTGA 2218 ||||| |||||| || ||| |||| ||| | || | |||| | || ||||||| ||||| Sbjct 868 TCAGATGATGCTGAT-GGTTCTCGAGTCAAAGAAATGGAGGGACGCATCAAGAATCTTGA 926 Query 2219 GCTGATGGTGTTGGATTTCAAAGTTGAACTGG-ACAAGAAAAAGGACAAATCTTGTGATG 2277 | ||||||||| ||| |||||| | |||||| | |||| || || || ||||| ||||| Sbjct 927 GATGATGGTGTCAGATCTCAAAGCTAAACTGGGAAAAGAGAA-GGCCATATCTTCTGATG 985 Query 2278 ATGG 2281 |||| Sbjct 986 ATGG 989 > Ahg943361 jgi|Araly1|943361|scaffold_603905.1 Length=495 Score = 102 bits (55), Expect = 1e-20 Identities = 73/81 (90%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 2117 TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTT-ATA 2175 ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 417 TTTGAAGACAAATCTTGAGGAGGTGTCCTTGGAGAGGAAGAAATCAGACGATGCTTGAT- 475 Query 2176 GGTCTCGGGTCTACCAACTCG 2196 | ||||||||| | ||||||| Sbjct 476 G-TCTCGGGTCCAACAACTCG 495 > Ahg937876 jgi|Araly1|937876|scaffold_502067.1 Length=495 Score = 102 bits (55), Expect = 1e-20 Identities = 73/81 (90%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 2117 TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTT-ATA 2175 ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 417 TTTGAAGACAAATCTTGAGGAGGTGTCCTTGGAGAGGAAGAAATCAGACGATGCTTGAT- 475 Query 2176 GGTCTCGGGTCTACCAACTCG 2196 | ||||||||| | ||||||| Sbjct 476 G-TCTCGGGTCCAACAACTCG 495 > Ahg924972 jgi|Araly1|924972|scaffold_200533.1 Length=905 Score = 97.1 bits (52), Expect = 5e-19 Identities = 110/137 (80%), Gaps = 8/137 (6%) Strand=Plus/Plus Query 2121 AAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTTATAGGTCT 2180 ||| ||||||||||||||||||||||||||||||||||| || | |||| ||| ||| Sbjct 693 AAGACAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAAGCA-AT--TGCTGATAA-TCT 748 Query 2181 CGG-GTCTACCAACTCGAGGAATGCTTCAAGAACCTTGAGCTGATGGT-GTTGGATTTCA 2238 ||| ||| | || | |||||| || ||||||| | ||||||| | | || |||| ||| Sbjct 749 CGGAGTCCAAGAATTGGAGGAACGCGTCAAGAATATGGAGCTGA-GTTTGTCGGATCTCA 807 Query 2239 AAGTTGAACTGGACAAG 2255 |||||||||| || ||| Sbjct 808 AAGTTGAACTTGA-AAG 823 > Ahg887366 jgi|Araly1|887366|Al_scaffold_0034_1 Length=450 Score = 87.9 bits (47), Expect = 3e-16 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2117 TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTT 2172 ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 393 TTTGAAGACAAATCTTGAGGAGGTGTCCTTGGAGAGGAAGAAATCAGACGATGCTT 448 > Ahg346045 jgi|Araly1|346045|fgenesh1_pg.C_scaffold_4002387 Length=882 Score = 82.4 bits (44), Expect = 1e-14 Identities = 289/402 (72%), Gaps = 37/402 (9%) Strand=Plus/Plus Query 82 GGAATCAAAAGC---CGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138 |||||||||||| | |||| | |||||||||||||||||||||||||||||||| || Sbjct 38 GGAATCAAAAGCAGACAAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGAAAGCTG 97 Query 139 TGATAGCGTCTAAGGCATTCGTGA-GTGGAGGATGCGAATGGT-TCCTTTACC-TCTATC 195 |||| ||||| ||||| | | || ||||||||||||| | || ||| | |||| Sbjct 98 CGATATCGTCTTCTTTATTCG-GCTGCGGCGGATGCGAATGGTATG-TT-ACCGTTTATC 154 Query 196 CGAAGGGACAGAGTCTTAAT-GATGATCACATGTCTTTGTATCT-GTCCGTTGCAAATAG 253 | |||||| | | || | | ||||||| || || || |||| | ||||| | | Sbjct 155 CCAAGGGATAC--TATTG-TCG-TGATCACTTGGCTGTG-ATCTTGAATGTTGCTAGTCC 209 Query 254 TAAATCCTTGGGAAGTGGATGGAAACGGAGTGCTAAATT-TTACTTC-TCTGTGCTGAAT 311 |||||| ||| ||| |||||||||| | | | || | || |||| | | || ||||| Sbjct 210 TAAATCATTGAGAACTGGATGGAAAAGAAAAGTTAG-TCCTTGCTTCGTTT-TGTTGAAT 267 Query 312 GAATCTGACAAAGAACTCTACAGATCAACTA--T-T-A-GCCAAGAATTCTGTCT-GTTT 365 | || | |||||| ||| | | || || || | | | | ||||| | | || ||| Sbjct 268 CAGTCCGGCAAAGAGCTCCAAATATTAAGTACATCTGAAG--AAGAAGGCAG-CTTGTTC 324 Query 366 TGCGTTCAGG-CTCTAGCCTGGGGT-ATC-CGAAAGGCTTTGCCTCTTAGCAAGTTTG-A 421 || | | ||| | | | |||||||| ||| | |||| || ||||||||||||| || | Sbjct 325 TGTGATAAGGTCCC-ATCCTGGGGTTATCAC-AAAGTATT-GCCTCTTAGCAAGCTTACA 381 Query 422 GGAAAAAGGGTTTTTGGAGAAGGACAAACTCATCGTTGAAGT 463 | || ||| |||||| ||||| |||||| | ||| || |||| Sbjct 382 G-AAGAAGAGTTTTTAGAGAATGACAAATTGATCATTAAAGT 422 > Ahg346044 jgi|Araly1|346044|fgenesh1_pg.C_scaffold_4002386 Length=906 Score = 67.6 bits (36), Expect = 4e-10 Identities = 60/71 (85%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 82 GGAATCAAAAGC---CGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138 |||| ||||||| || |||| | |||||||||||||||||||||||||||| ||| || Sbjct 38 GGAACCAAAAGCAAACGAGTTTCACGTTTGAGATAGATAACTTCTCGGAGAAGGAAGCTG 97 Query 139 TGATAGCGTCT 149 |||| ||||| Sbjct 98 AGATATCGTCT 108 > Ahg321927 jgi|Araly1|321927|fgenesh1_pm.C_scaffold_4001984 Length=2649 Score = 67.6 bits (36), Expect = 4e-10 Identities = 38/39 (97%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 2125 CAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAG 2163 ||||||||||||||||||||||||||||||||||| ||| Sbjct 1250 CAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAAGCAG 1288 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86960029335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5