BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42500.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935133 jgi|Araly1|935133|scaffold_403121.1 1905 0.0
Ahg486299 jgi|Araly1|486299|fgenesh2_kg.5__2291__AT3G58500.1 1371 0.0
> Ahg935133 jgi|Araly1|935133|scaffold_403121.1
Length=1100
Score = 1905 bits (1031), Expect = 0.0
Identities = 1078/1100 (98%), Gaps = 5/1100 (0%)
Strand=Plus/Plus
Query 81 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGACTTCCCCTAATTTGGAAACCTAG 140
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGGCTTCCCCTAATTTGGAAACCTAG 60
Query 141 TCCTGTTTCCTGATCTGTTTTCCGGATCGGAC-----GAGAGACGAATTAACGAAAATGG 195
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 61 TCCTGTTTCCTGATCTGTTTTCCGGATCGGACGAGAGGAGAGACGAAGTAACGAAAATGG 120
Query 196 GCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTCA 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 GCGCGAATTCTATTCCGACGGACGCAACCATTGATCTTGATGAGCAGATCTCGCAGCTTA 180
Query 256 TGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGA 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCATTATGCGAGAAAGCCAAGGAGA 240
Query 316 TCTTAATGGATGAAAGCAATGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATA 375
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTTAATGGATGAAAGCAACGTTCAGCCTGTGAAAAGCCCTGTGACAATCTGCGGTGATA 300
Query 376 TTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATA 435
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 TTCATGGACAGTTCCATGATCTTGCTGAGCTTTTCCGTATAGGGGGAATGTGCCCTGATA 360
Query 436 CCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGTTATTATTCTGTTGAAACTGTTA 495
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CCAATTATCTGTTTATGGGAGACTATGTGGACCGCGGTTATTATTCTGTTGAAACTGTTA 420
Query 496 CGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACC 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGCTGTTAGTCGCCTTAAAGATGCGATATCCTCAGCGAATCACTATTCTTAGAGGAAACC 480
Query 556 ATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTACGAAAGTACG 615
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 ATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGATGAATGTCTGCGAAAGTACG 540
Query 616 GCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCT 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTTCGACTATTTTCCTCTGACAGCCT 600
Query 676 TGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATTATCTCCATCTATCGAGACCCTTG 660
Query 736 ACAACATAAGGAATTTTGATCGAGTTCAAGAAGTGCCCCATGAAGGGCCGATGTGTGACT 795
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 661 ACAACATAAGGAATTTTGATCGAGTTCAAGAAGTTCCCCATGAAGGGCCAATGTGTGACT 720
Query 796 TATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGGGGTGCCGGAT 855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 TATTATGGTCTGACCCCGATGACCGATGTGGTTGGGGCATCTCTCCTCGAGGTGCCGGAT 780
Query 856 ATACATTTGGTCAGGATATATCTGAACAATTCAATCACACAAACAACTTAAAGCTGATCG 915
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 ATACGTTTGGTCAGGATATATCCGAACAATTCAATCACACAAACAACTTAAAGCTGATCG 840
Query 916 CCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCCGAGCTCACCAGTTGGTTATGGATGGATACAACTGGGCTCACGAGCAAAAAGTGGTTA 900
Query 976 CTATTTTCAGTGCACCAAACTATTGTTACCGTTGTGGGAACATGGCCTCGATTCTTGAGG 1035
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 901 CTATTTTCAGTGCACCAAACTATTGTTATCGTTGTGGGAACATGGCCTCGATTCTTGAGG 960
Query 1036 TCGACGACTGCAGGAACCACACCTTCATCCAGTTTGAACCAGCACCGAGGAGAGGAGAAC 1095
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 961 TCGACGACTGCAGGAACCACACCTTCATTCAGTTTGAACCAGCACCGAGGAGAGGAGAAC 1020
Query 1096 CAGACGTCACCCGAAGGACTCCAGACTATTTCCTGTGATCACTGGACACAGACTCATCTC 1155
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1021 CAGATGTCACCCGAAGGACTCCAGACTATTTTCTGTGATCACTGGACACAGACTCATCTC 1080
Query 1156 AATCAGCAGCTGCAGGCACC 1175
||||||||||||||||||||
Sbjct 1081 AATCAGCAGCTGCAGGCACC 1100
> Ahg486299 jgi|Araly1|486299|fgenesh2_kg.5__2291__AT3G58500.1
Length=1359
Score = 1371 bits (742), Expect = 0.0
Identities = 973/1082 (90%), Gaps = 26/1082 (2%)
Strand=Plus/Plus
Query 73 AAAAAGGCGAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGACTTCCCCTAATTTGG 132
||||| |||||||||||||||| ||||||||||||||||||||| || |||||||| |||
Sbjct 1 AAAAA-GCGAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGG 59
Query 133 AAACCTAG-TCCT-GTTTCCTGATCTGTTTTCCGGAT-CG----G-ACG--AG-AGACGA 181
||||| | |||| || | ||||||||||| |||||| || | | | || ||||||
Sbjct 60 TAACCT-GTTCCTCGTCT-CTGATCTGTTTCCCGGATCCGACTAGAAGGAAAGAAGACGA 117
Query 182 ------ATTAAC-GAAA-ATGGGCGCGAATTCTATTCCGACGGACGCAACCATTGATCTT 233
| || | ||| |||||||||||||| |||||||||| |||||| | |||||
Sbjct 118 CGTCGCACTACCAAAAAGATGGGCGCGAATTCGCTTCCGACGGATGCAACCCTCGATCTA 177
Query 234 GATGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCA 293
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 178 GATGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCA 237
Query 294 TTATGCGAGAAAGCCAAGGAGATCTTAATGGATGAAAGCAATGTTCAGCCTGTGAAAAGC 353
||||| |||||||| ||||||||||| |||||||||||||| |||||||| || ||||||
Sbjct 238 TTATGTGAGAAAGCTAAGGAGATCTTGATGGATGAAAGCAACGTTCAGCCGGTTAAAAGC 297
Query 354 CCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGT 357
Query 414 ATAGGGGGAATGTGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGT 473
|||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 358 ATAGGGGGAAAGTGCCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGA 417
Query 474 TATTATTCTGTTGAAACTGTTACGCTGTTAGTCGCCTT-AAAGATGCGATATCCTCAGCG 532
||||||||||| ||||||||||||||||| || | ||| |||| | || ||||| |||||
Sbjct 418 TATTATTCTGTCGAAACTGTTACGCTGTTGGTTGGCTTGAAAG-TACGGTATCCACAGCG 476
Query 533 AATCACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AATCACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTA 536
Query 593 TGATGAATGTCTACGAAAGTACGGCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTT 652
|||||||||||| |||||||| ||||| |||||||||||||| || ||||||||||||||
Sbjct 537 TGATGAATGTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTT 596
Query 653 CGACTATTTTCCTCTGACAGCCTTGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATT 712
||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 597 TGACTATTTTCCACTGACAGCCTTGGTGGAGTCAGAAATATTCTGCCTTCACGGTGGATT 656
Query 713 ATCTCCATCTATCGAGACCCTTGACAACATAAGGAATTTTGATCGAGTTCAAGAAGTGCC 772
||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 657 ATCACCATCAATCGAGACCCTTGACAACATTAGGAACTTTGATCGAGTTCAAGAAGTTCC 716
Query 773 CCATGAAGGGCCGATGTGTGACTTATTATGGTCTGACCCCGATGACCGATGTGGTTGGGG 832
||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 717 GCATGAAGGGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGTTGGGG 776
Query 833 CATCTCTCCTCGGGGTGCCGGATATACATTTGGTCAGGATATATCTGAACAATTCAATCA 892
||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 777 AATCTCTCCTCGTGGTGCCGGATATACATTTGGTCAGGACATTTCCGAACAATTCAATCA 836
Query 893 CACAAACAACTTAAAGCTGATCGCCCGAGCTCACCAG-TTGGTTATGGATGGATACAACT 951
||| |||||||||||||||||||||||||| || ||| ||| |||||||||||| |||||
Sbjct 837 CACTAACAACTTAAAGCTGATCGCCCGAGCGCATCAGCTTG-TTATGGATGGATTCAACT 895
Query 952 GGGCTCACGAGCAAAAAGTGGTTACTATTTTCAGTGCACCAAACTATTGTTACCGTTGTG 1011
|||| ||||||||||| ||||||||||| |||||||||||||||||||| || || ||||
Sbjct 896 GGGCCCACGAGCAAAAGGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTG 955
Query 1012 GGAACATGGCCTCGATTCTTGAGGTCGACGACTGCAGGAACCACACCTTCATCCAGTTTG 1071
| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 956 GAAACATGGCCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTG 1015
Query 1072 AACCAGCACCGAGGAGAGGAGAACCAGACGTCACCCGAAGGACTCCAGACTATTTCCTGT 1131
|||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| |
Sbjct 1016 AACCAGCACCGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTAT 1075
Query 1132 GA 1133
||
Sbjct 1076 GA 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5