BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42510.2
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483344 jgi|Araly1|483344|fgenesh2_kg.4__2404__AT2G42510.1 804 0.0
Ahg952207 jgi|Araly1|952207|scaffold_46000001.1 425 5e-118
Ahg474711 jgi|Araly1|474711|fgenesh2_kg.1__4665__AT1G54380.1 254 2e-66
> Ahg483344 jgi|Araly1|483344|fgenesh2_kg.4__2404__AT2G42510.1
Length=1848
Score = 804 bits (435), Expect = 0.0
Identities = 613/689 (89%), Gaps = 52/689 (8%)
Strand=Plus/Plus
Query 1313 AAGACTATGTTGTAAAAGAGGAGAAAACTGAAGATAATGACGATTACAATAGCATTTTGA 1372
|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 1169 AAGACTATGTTGTAAAAGCGAAGAACACTGAAGATAATGACGATTACAATAGCATTTTGA 1228
Query 1373 GGCCTGCGTTTGCTGTGGATGGAGAACCTGATTTCGATTCTGGACCACCAGAAGACGGGA 1432
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1229 GGCCTGCGTTTGCCGTGGATGGAGAACCTGATTTCGATTCTGGACCACCAGAAGATGGGC 1288
Query 1433 TTGAATATTTAAGACGA--G--T---C-----AGGTGGGAGGCTAAGCGAATTCCAAATG 1480
||||||||||||||||| | | | |||||||||||||||||||||||||| |
Sbjct 1289 TTGAATATTTAAGACGATTGTTTCCACAATTTAGGTGGGAGGCTAAGCGAATTCCAAAAG 1348
Query 1481 TAAAAGTAGCCAAGGTAAGTGGAAGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATG- 1539
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TAAAAGTAGCCAAGGTAAATGGAAGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATGC 1408
Query 1540 C-C--A---C--AAAT-------T-CCCAGAGCACCTGCAACCGGTGAAGGAATGGGAGG 1583
| | | | |||| | |||||||||||||| |||||||||||||||||||
Sbjct 1409 CACAAATTTCTGAAATCCCCAAATGCCCAGAGCACCTGCTGCCGGTGAAGGAATGGGAGG 1468
Query 1584 ACTCGTTGCTTTCCGACTTCTCACACATTCGTCTGGTATTCCTTTCTTCCAACTTGCATA 1643
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1469 AGTCGTTGCTTTCCGACTTCTCACACATTCGGCTGGTATTCCTTTCTTCTAACTTGCATA 1528
Query 1644 CTTATCAGTGTTTCTCTT-A---AC--G----G-A--CAAAGATACAAGGAATGGACTCA 1690
| || ||||||||||||| | || | | | ||||||||||||||||||||||
Sbjct 1529 C-TACCAGTGTTTCTCTTAATGGACAAGATATGAATGGAAAGATACAAGGAATGGACTCA 1587
Query 1691 GTGACACGGGTATCAAAGCTGAGAAAGCGGATATGTTTGG-TGAAAAGGAGAGCGGTTTA 1749
||||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1588 GTGACGCGGGTCTCAAAGCTGAGAAAGCGGATATGTTTGGTTGAGAAGGAGAGCGGTTTA 1647
Query 1750 GAGAGTAGCGACTGCAAATGGGTAGTAGCATTATGTGCATCAGTGGACACTCCTCCGGAT 1809
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1648 GAGAGTAGTGACTGCAAATGGGTAGTAGCATTATGTGCATCAGTGGACACTCCTTTGGAT 1707
Query 1810 GCTGATACTAGTGCTTGTCTCAGAGCTCTTGTGAGAAAGTGTGCGAGTCTTCGTGCGTTA 1869
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1708 GCTGATACTAGTGCTTGTCTCAGAGCTCTTTTGAGAAAGTGTGCGAGTCTTCGTGCGTTA 1767
Query 1870 GAGGTTGGAGTCTTGGAGATGAACAAGTTATCATTATGGCAAATATGCTCATCACCATCG 1929
||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1768 GAGGTTG-A-------AGATGAACAAGTTATCATTATGGCTAATATGCTCATCACCATCG 1819
Query 1930 CAGGCAGATATTTTGGCCAAATGGAATGA 1958
|||||||||| ||||||||||||||||||
Sbjct 1820 CAGGCAGATACTTTGGCCAAATGGAATGA 1848
Score = 614 bits (332), Expect = 1e-174
Identities = 391/418 (94%), Gaps = 9/418 (2%)
Strand=Plus/Plus
Query 782 AGAAGAAGAATGATGGGGACACGCTCGCTAGGGCTTCTGATATCCATAAGATCGAAAAGA 841
|||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 671 AGAAGAAGGATGATGTGGACACGCTCGCTAGGGCTTCTGATATCCATAAGATTGAAAAGA 730
Query 842 ATGGAAATGGGTCTAAAGATCAGCGTGAGAAGGTGGAAAGAGTGAGAGTTAAGGATAATG 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ATGGAAATGGGTCTAAAGATCAGCGTGAGAAGGTGGAAAGAGTGAGAGTTAAGGATAATG 790
Query 902 CATTTGTTGGAAGATCTGTGAATATTGATTTGGTTGATGATACTGCGTTGTTTGATGTTG 961
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 791 CTTTTGTTGGAAGATCTGTGAATATCGATTTGGTTGATGATACTGCGTTGTTTGATGTTG 850
Query 962 TTCCTTTCTACAAGAAAGGTAAAGATCATTCTAAGAGACCAGTAACTGCACACACTGATA 1021
||||||||||||||||||||||||||||| |||||||||||| | | || |||||
Sbjct 851 TTCCTTTCTACAAGAAAGGTAAAGATCATCCTAAGAGACCAG-----G-A-AC--TGATA 901
Query 1022 AGGATGCACCAAGAAAGCATAAGAAAGTTGGAGTAGAGAAACCGATTGATAAGGGAAATG 1081
|| ||| ||||| |||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct 902 AGTATGAACCAAAAAAGCATAAGAAAGTTGGTGGAGAGAAACCTATTGATAAGGGAAATG 961
Query 1082 CTTCTAGCATTGTTGAAAGGAATGCGTCAACCAAAGTTTCTGACTTTCGTAACAGTGGAG 1141
|||||||| |||||||||||| ||| ||||| ||||||||||||||||||||| ||||||
Sbjct 962 CTTCTAGCCTTGTTGAAAGGAGTGCATCAACTAAAGTTTCTGACTTTCGTAACCGTGGAG 1021
Query 1142 AAATGAATGGGAAGCAGTTGCGGATAATGTACTCTAGGAACCAAATGGAGTCGATGAG 1199
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1022 AAATGAATGGGAAGCAGTTGCGGATAATGTATTCTAGGAACCAAATGGAGTCGATGAG 1079
Score = 442 bits (239), Expect = 5e-123
Identities = 285/306 (93%), Gaps = 8/306 (3%)
Strand=Plus/Plus
Query 56 TTGGGTCGGGGAAAACTTCGATTTCTCGGGATGAATTTGCAGAAGACTCGCTAAAGATCG 115
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 38 TTGGGTCGGAGAAAACTTCGATTTCTCGGGATGAATTTGCAGCAGACTCGCTAAAGATCG 97
Query 116 TTTCTTTGCCGCCGGTTGAGAACGACGACTCTGTTGAAGAGATGATAAGCCCAAAGAAGC 175
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 TTTCTTTGCCGCCGGTAGAGAACGACGACTCTGTTGAAGAGATGATAAGCCCAAAGAAGC 157
Query 176 AAGTAAAGTCTTCGCCTTTTACTTCTGTTTTTGAGAAGGATGGAGAAATCATCCATTCGG 235
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 158 AAGTAAAGTCTTCGCCTTTTACTTCTGTTTGTGAGAACGATGGAGAAACCATCCATTCGG 217
Query 236 ATTCTATTGACA-TTTCTTTCTCCGAAACGACTCTTGAAGAAACCGTGGCGATGAATGTG 294
|||||||||| | |||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 218 ATTCTATTGA-AGTTTCTTTCTCCGAAACGAGTCCTGAAGAAACCGTGGCGATGAATGTG 276
Query 295 GAGTGTCCTGGAGTAGTAGTAGTCTCTGTACCTGAAAATGGTTCCACGATTCTTGAAGAG 354
||||||||||||||||| |||||||||||||| | |||| ||| |||||||||||
Sbjct 277 GAGTGTCCTGGAGTAGT------CTCTGTACCTGAAACTAGTTCAACGTTTCTTGAAGAG 330
Query 355 AATAAG 360
|| |||
Sbjct 331 AACAAG 336
Score = 176 bits (95), Expect = 5e-43
Identities = 134/152 (88%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 432 CAAGATAAAGGATGTTGTTGAGACTGATGGGTTCGTCGTATCTATCTCTGATATGAAAGA 491
||||||| |||||||||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 333 CAAGATAGAGGATGTTGTTGAGACTGATGGGTGCGTCGTTTCTATCTCTGATGTGAAAGA 392
Query 492 AAGTTTGAACTCGGAGAAGAAGGGACAAGATTCTGATGGTCAGAGGATTGTGGAGGCTGA 551
|||||||||||||||||||||||||||||||||||||| |||||| | | ||||| ||
Sbjct 393 AAGTTTGAACTCGGAGAAGAAGGGACAAGATTCTGATGTTCAGAGTACTATGGAGAA-GA 451
Query 552 GAAGATAATATTGTTCGCTGAAATCGGAGATG 583
|||||| | ||| |||||||||| |||||
Sbjct 452 GAAGAT--TGTTG---GCTGAAATCGAAGATG 478
Score = 137 bits (74), Expect = 3e-31
Identities = 88/95 (93%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 694 TGCGTCGGTTCTATCTCTGATATGAAAGAAATTTTGAACTCTCAGAAGAAGGGACAAGAT 753
||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 TGCGTCGTTTCTATCTCTAATATGAAAGAAAGTTTGAACTCTCAGAAGAAGGGACAAGAT 597
Query 754 TCTGATGTTCAAATACTTTGGGAGACTGAGAAGAA 788
||||||| ||| ||||||| |||| ||||||||||
Sbjct 598 TCTGATGCTCAGATACTTTTGGAGGCTGAGAAGAA 632
Score = 111 bits (60), Expect = 2e-23
Identities = 84/95 (88%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 694 TGCGTCGGTTCTATCTCTGATATGAAAGAAATTTTGAACTCTCAGAAGAAGGGACAAGAT 753
||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||
Sbjct 364 TGCGTCGTTTCTATCTCTGATGTGAAAGAAAGTTTGAACTCGGAGAAGAAGGGACAAGAT 423
Query 754 TCTGATGTTCAAA-TACTTTGGGAGACTGAGAAGA 787
||||||||||| | |||| ||| ||| |||||||
Sbjct 424 TCTGATGTTCAGAGTACTATGG-AGAA-GAGAAGA 456
> Ahg952207 jgi|Araly1|952207|scaffold_46000001.1
Length=548
Score = 425 bits (230), Expect = 5e-118
Identities = 295/323 (91%), Gaps = 17/323 (5%)
Strand=Plus/Plus
Query 1313 AAGACTATGTTGTAAAAGAGGAGAAAACTGAAGATAATGACGATTACAATAGCATTTTGA 1372
|||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct 44 AAGACTATGTTGTAAAAGCGAAGAACACTGAAGATAATGACGATTACAATAGCATTTTGA 103
Query 1373 GGCCTGCGTTTGCTGTGGATGGAGAACCTGATTTCGATTCTGGACCACCAGAAGACGGGA 1432
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 104 GGCCTGCGTTTGCCGTGGATGGAGAACCTGATTTCGATTCTGGACCACCAGAAGATGGGA 163
Query 1433 TTGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGCGAATTCCAAATGTAAAAGTAGCCA 1492
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 164 TTGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGCGAATTCCAAAAGTAAAAGTAGCCA 223
Query 1493 AGGTAAGTGGAAGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATGCCACAAATT-C-- 1549
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 224 AGGTAAATGGAAGCAAGTACAGAGAGAAAGAGCAAAGTGTTTACATGCCACAAATTTCTG 283
Query 1550 ----CC--A---G---AG--CACCTGCAACCGGTGAAGGAATGGGAGGACTCGTTGCTTT 1595
|| | | || ||||||| |||||||||||||||||||| ||||||||||
Sbjct 284 AAATCCCCAAATGCCCAGAGCACCTGCTGCCGGTGAAGGAATGGGAGGAGTCGTTGCTTT 343
Query 1596 CCGACTTCTCACACATTCGTCTG 1618
||||||||||||||||||| |||
Sbjct 344 CCGACTTCTCACACATTCGGCTG 366
Score = 250 bits (135), Expect = 3e-65
Identities = 152/160 (95%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 1672 GATACAAGGAATGGACTCAGTGACACGGGTATCAAAGCTGAGAAAGCGGATATGTTTGGT 1731
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 366 GATACAAGGAATGGACTCAGTGACGCGGGTCTCAAAGCTGAGAAAGCGGATATGTTTGGT 425
Query 1732 -GAAAAGGAGAGCGGTTTAGAGAGTAGCGACTGCAAATGGGTAGTAGCATTATGTGCATC 1790
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 426 TGAGAAGGAGAGCGGTTTAGAGAGTAGTGACTGCAAATGGGTAGTAGCATTATGTGCATC 485
Query 1791 AGTGGACACTCCTCCGGATGCTGATACTAGTGCTTGTCTC 1830
||||||||||||| ||||||||||||| |||||||||||
Sbjct 486 AGTGGACACTCCTTTGGATGCTGATACTTGTGCTTGTCTC 525
> Ahg474711 jgi|Araly1|474711|fgenesh2_kg.1__4665__AT1G54380.1
Length=1756
Score = 254 bits (137), Expect = 2e-66
Identities = 189/214 (88%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 1339 ACTGAAGATAATGACGATTACAATAGCATTTTGAGGCCTGCGTTTGCTGTGGATGGAGAA 1398
||||| |||||||| |||||||||||||||||||| |||||||||| || |||||||||
Sbjct 941 ACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAGGTAGATGGAGAA 1000
Query 1399 CCTGA-TTTCGATTCTGGACCACCAGAAGACGGGATTGAATATTTAAGACGAGTCAGGTG 1457
||||| ||| | | |||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 1001 CCTGATTTTAG-TACTGGACCACCAGAAGATGGGCTCGAATATTTAAGACGAGTCAGGTG 1059
Query 1458 GGAGGCTAAGCGAATTCCAAATGTAAAAGTAGCCAAGGTA-AGTGGAAGCAAGTACAGAG 1516
|||||||||| ||||||| ||||| | |||||||||| || | || ||||||||||| |
Sbjct 1060 GGAGGCTAAGGGAATTCCGAATGTTAGAGTAGCCAAGATAGA-TGAAAGCAAGTACATAA 1118
Query 1517 AGAAAGAGCAAAGTGTTTACATGCCACAAATTCC 1550
||||||||||||||||||| ||||||| ||||||
Sbjct 1119 AGAAAGAGCAAAGTGTTTATATGCCACTAATTCC 1152
Score = 69.4 bits (37), Expect = 9e-11
Identities = 50/56 (89%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 1549 CCCAGAGCACCTGC-AACCGGTGAAGGAATGGGAGGACTCGTTGCTTTCCGACTTC 1603
||||||| |||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1168 CCCAGAGTACCT-CTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTCCGACTTC 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74656880200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5