BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42530.1
Length=653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483346 jgi|Araly1|483346|fgenesh2_kg.4__2406__AT2G42530.1 712 0.0
Ahg902253 jgi|Araly1|902253|Al_scaffold_0004_2903 431 3e-120
> Ahg483346 jgi|Araly1|483346|fgenesh2_kg.4__2406__AT2G42530.1
Length=530
Score = 712 bits (385), Expect = 0.0
Identities = 421/439 (96%), Gaps = 0/439 (0%)
Strand=Plus/Plus
Query 70 CTCATGGCGATGTCTTTATCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAAC 129
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCATGGCGATGTCTTTATCAGGTGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAAC 60
Query 130 GTAGGAGCAAAGCAGAGTGGTGTTGGTACCGTCAGAGTTGGCCGGAAGAGTGAGCTCGTC 189
|||||||| |||||||| | |||||| ||||| |||||||||||||||||||| |||||
Sbjct 61 GTAGGAGCCAAGCAGAGCAGCGTTGGTGCCGTCGGAGTTGGCCGGAAGAGTGAGTTCGTC 120
Query 190 GTCGTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAAGTGACGGCAACATCCTC 249
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 GTCGTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAGGTGACGGCAACATCCTC 180
Query 250 GATGACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACGAAGGAG 309
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GATGACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACAAAGGAG 240
Query 310 GCCTTGGCGGATGGCGAGAAAACAAAAGACTACATTGTTGAGAAAACCATTGAAGCCAAT 369
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GCGTTGGCGGATGGTGAGAAAACAAAAGAGTACATTGTTGAGAAAACCATTGAAGCCAAT 300
Query 370 GAAACTGCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTGACTGAGAAAGGAAAAGAA 429
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GAAACTGCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTGACGGAGAAAGGAAAAGAT 360
Query 430 GCCGGAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGAAGAGGCTAAGAATGCCACA 489
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 361 GCCGGAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGGAGAGGCTAAGGATGCCACA 420
Query 490 AAGTCCTGATTCAACCACT 508
||| |||||||||||||||
Sbjct 421 AAGCCCTGATTCAACCACT 439
> Ahg902253 jgi|Araly1|902253|Al_scaffold_0004_2903
Length=420
Score = 431 bits (233), Expect = 3e-120
Identities = 364/426 (85%), Gaps = 13/426 (3%)
Strand=Plus/Plus
Query 73 ATGGCGATGTCTTTATCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAACGTA 132
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAGCG-- 58
Query 133 GGAGCAAAGCAGAGTGGTGTTGGTACCGTCAGAGTTGGCCGGAAGAGTGAGCTCGTCGTC 192
| ||| ||||||| ||| |||| | |||||||| |||| ||| | | || ||||||||
Sbjct 59 G-AGCCAAGCAGACCGGTATTGGGGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTC 117
Query 193 GTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAAGTGACGGCAACATCCTCGAT 252
||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 118 GTTTCTCAGCGCAAGAAGTCGTTGATCTACGCCGCTAAAAGTGACGGCAACATCCTCGAT 177
Query 253 GACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACGAAGGAGGCC 312
||||||||| | ||||||||||||||||| ||||||||||||||||| || || || ||
Sbjct 178 GACCTCAACCAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAAGCG 237
Query 313 TTGGCGGATGGCGAGAAAACAAAAGACTACATTGTTGAGAAAACCATTGAAG-C-CA-AT 369
||||| |||||||||||| |||| |||||| ||||||| ||||||| |||| | || ||
Sbjct 238 TTGGCAGATGGCGAGAAAGCAAAGGACTACGTTGTTGAAAAAACCAGTGAAAACGCAGAT 297
Query 370 GAAACTGCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTG-ACTGAGAAAGGAAAAGA 428
| | || | | | |||||| ||||||||| ||| || | | | |||||||||||||||
Sbjct 298 -ACATTGGG--TAAAGAAGCTGAGAAAGCTTCGGAGTACGCGGA-TGAGAAAGGAAAAGA 353
Query 429 AGCCG-GAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGAAGAGGCTAAGAATGCCA 487
||| | ||| |||||| |||||||||| |||||||||||||| ||| |||||| ||||||
Sbjct 354 AGCTGCGAA-CAAGGCCGCTGAGTTCGCAGAGGGTAAAGCAGGAGACGCTAAGGATGCCA 412
Query 488 CAAAGT 493
||||||
Sbjct 413 CAAAGT 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23941191876
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5