BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42540.2
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902253 jgi|Araly1|902253|Al_scaffold_0004_2903 604 2e-172
Ahg483346 jgi|Araly1|483346|fgenesh2_kg.4__2406__AT2G42530.1 440 6e-123
> Ahg902253 jgi|Araly1|902253|Al_scaffold_0004_2903
Length=420
Score = 604 bits (327), Expect = 2e-172
Identities = 391/422 (93%), Gaps = 4/422 (1%)
Strand=Plus/Plus
Query 127 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCACTGGTATGGCTTCTTCTTTCCACAGCGGA 186
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAGCGGA 60
Query 187 GCCAAGCAGAGCAGCT-TCGGCGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTCGT 245
|||||||||| | | | | || ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCAAGCAGA-CCGGTATTGGGGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTCGT 119
Query 246 TTCTCAACGCAAGAAGTCGTTGATCTACGCCGCTAAAGGTGACGGCAACATCCTCGATGA 305
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 TTCTCAGCGCAAGAAGTCGTTGATCTACGCCGCTAAAAGTGACGGCAACATCCTCGATGA 179
Query 306 CCTCAACGAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAGGCATT 365
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 180 CCTCAACCAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAAGCGTT 239
Query 366 AGCAGATGGTGAGAAAGCGAAAG-ACTACGTTGTTGaaaaaaaCAGTGAAACCGCAGATA 424
|||||||| |||||||| |||| |||||||||||||||||| |||||||| ||||||||
Sbjct 240 GGCAGATGGCGAGAAAGC-AAAGGACTACGTTGTTGAAAAAACCAGTGAAAACGCAGATA 298
Query 425 CATTGGGTAAAGAAGCTGAGAAAGCTGCGGCGTATGTGGAGGAGAAAGGAAAAGAAGCCG 484
|||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||||||| |
Sbjct 299 CATTGGGTAAAGAAGCTGAGAAAGCTTCGGAGTACGCGGATGAGAAAGGAAAAGAAGCTG 358
Query 485 CAAACAAGGCGGCAGAGTTCGCGGAGGGTAAAGCAGGAGAGGCTAAGGATGCCACAAAGT 544
| |||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 359 CGAACAAGGCCGCTGAGTTCGCAGAGGGTAAAGCAGGAGACGCTAAGGATGCCACAAAGT 418
Query 545 AG 546
||
Sbjct 419 AG 420
> Ahg483346 jgi|Araly1|483346|fgenesh2_kg.4__2406__AT2G42530.1
Length=530
Score = 440 bits (238), Expect = 6e-123
Identities = 367/428 (86%), Gaps = 13/428 (3%)
Strand=Plus/Plus
Query 124 CTCATGGCGATGTCTTTCTCAGGAGCTGTTCTCACTGGTATGGCTTCTTCTTTCCAC-A- 181
||||||||||||||||| ||||| |||||||||| ||| |||| ||||||||||||| |
Sbjct 1 CTCATGGCGATGTCTTTATCAGGTGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAAC 60
Query 182 G-CGGAGCCAAGCAGAGCAGC-TTCGGCGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGT 239
| |||||||||||||||||| || || || ||| |||| |||| ||| | | |||||||
Sbjct 61 GTAGGAGCCAAGCAGAGCAGCGTT-GGTGCCGTCGGAGTTGGCCGGAAGAGTGAGTTCGT 119
Query 240 CGTCGTTTCTCAACGCAAGAAGTCGTTGATCTACGCCGCTAAAGGTGACGGCAACATCCT 299
||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 120 CGTCGTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAGGTGACGGCAACATCCT 179
Query 300 CGATGACCTCAACGAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGA 359
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 180 CGATGACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACAAAGGA 239
Query 360 GGCATTAGCAGATGGTGAGAAAGCGAAAGACTACGTTGTTGaaaaaaaCAGTGAAACCGC 419
||| || || |||||||||||| | ||||| ||| ||||||| |||| || |||| ||
Sbjct 240 GGCGTTGGCGGATGGTGAGAAAACAAAAGAGTACATTGTTGAGAAAACCATTGAAGCCA- 298
Query 420 A-GATACATTGGG--TAAAGAAGCTGAGAAAGCTGCGGCGTATGTGGA-GGAGAAAGGAA 475
| || || | | | | | |||||| |||||||| || |||||| | |||||||||||
Sbjct 299 ATGAAAC-T-GCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTG-ACGGAGAAAGGAA 355
Query 476 AAGAAGCCGCAAACAAGGCGGCAGAGTTCGCGGAGGGTAAAGCAGGAGAGGCTAAGGATG 535
|||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 356 AAGATGCCGGAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGGAGAGGCTAAGGATG 415
Query 536 CCACAAAG 543
||||||||
Sbjct 416 CCACAAAG 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829729410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5