BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42550.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483349 jgi|Araly1|483349|fgenesh2_kg.4__2409__AT2G42550.1 1502 0.0
> Ahg483349 jgi|Araly1|483349|fgenesh2_kg.4__2409__AT2G42550.1
Length=1035
Score = 1502 bits (813), Expect = 0.0
Identities = 962/1036 (93%), Gaps = 2/1036 (0%)
Strand=Plus/Plus
Query 1 ATGCAACCAAAAACAGAGTTCGTGAAGTTCTTGAGAAAAGGTGCGTATGGATCAGTCGAT 60
||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||||
Sbjct 1 ATGCAACCAAAAACAGAGTTCGTGAAGTTCTTGGGAAAAGGTTCATACGGATCAGTCGAT 60
Query 61 CTCGTCAAGTACATCAAACGCGACGATAACGCTTTGCCTCTTTACGCCGCCGTGAAAACC 120
||||||||||||||||||||| |||| | | ||||||| || |||||||| |||||||||
Sbjct 61 CTCGTCAAGTACATCAAACGCAACGACAGCTCTTTGCCGCTATACGCCGCTGTGAAAACC 120
Query 121 GCCGAATGTGAAGACTACAACTCTCTCGAAAGAGAAATTCAGATTCTATCCAAACTTGAA 180
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||
Sbjct 121 GCCGAATGTGAAGACTACGACTCTCTCCAAAGAGAAATTCAGATTCTATCCAAACTCAAA 180
Query 181 GGATGTCGAAGGATCGTGCAATGCTATGGGAATTATACTTTAGAAGAGGACTTCGATGTC 240
||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GGATGTCAAAGAATCGTGCAATGCTATGGGAATTATACTTTAGAAGAGGATTTCGATGTC 240
Query 241 GGTGGATTCCGAGTCTACAAGATGGTTATGGAGTACGCAGCTGCAGGGAGTTTATTCAGT 300
| |||||||||||||||||||| ||||||||||||||||| ||||||| |||| || |
Sbjct 241 AGCGGATTCCGAGTCTACAAGATTGTTATGGAGTACGCAGCGGCAGGGAATTTAACCACT 300
Query 301 TTCATGGACAGTTACAAAGATAGAAAGTTACCGGAAACGATGATTAAAGACTTTACTCGT 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 301 TTCATGGACAGTTACAAAGATAGAAAGTTACCGGAAACGATGATCAAAGACTTCACTCGT 360
Query 361 ATGATTCTTCAAGGATTAGTCTCTGTTCATAGACTCGGTTATGTTCATTGCGATCTAAAA 420
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 ATGATTCTTCAAGGATTGGTCTCTGTTCATAGCCTCGGTTATGTTCATTGCGATCTAAAA 420
Query 421 CCCGATAATCTACTTGTCTTTCCATGTAGACAATCTTACGAATTGAAGATTTCAGATTTC 480
||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||
Sbjct 421 CCCGATAATCTACTTGTATTTCCGTATAGACAGTCTTACGAATTGAAGATTTCAGATTTC 480
Query 481 GGGTCTTCGAGAAAAGTCGGAGAATATTCTGATTGCTGGGATGTTGATTTGCCGTTTGTT 540
|| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 481 GGTTCTTCGAGAAAAGTAGGAGAATATTCGGATTGCTGGGAAGTTGATTTACCGTTTGTG 540
Query 541 GGAACGCCTGTTTACATGTCGCCAGAATCAGTCCGTAGCGGCGTGGCTGAGAAAGCCCTA 600
||||||||| |||||||||||||||||||||||| | ||| |||||||||||| |||||
Sbjct 541 GGAACGCCTATTTACATGTCGCCAGAATCAGTCCACAACGGTGTGGCTGAGAAAACCCTA 600
Query 601 GATTTGTGGTCGTTAGGGTGCATAGTATTGGAGATGTATACCGGTGTGATTCCATGGTCG 660
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 601 GATTTGTGGTCGTTAGGGTGCATAGTACTGGAGATGTATACCGGTGTGAGTCCATGGTCG 660
Query 661 GAGGTTGAATTTGAGGATCTTGCGCCTGCTCTATCAAAAGGTAAAGCGCCGGAGATTCCA 720
||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 661 GAGGTAGAATTTGAGGATCTTGCGCCTATTCTATTGAAAGGTAAAGCGCCGGAGATTCCA 720
Query 721 AAGAGTTTACCGTGTGATGCAAGGAAGTTTCTAGAGACGTGTTTTTCAAGGAACCCTAAG 780
||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 721 GAGAGTGTACCGTGTGATGCAAGGAAGTTTCTAGAAACGTGTTTTGCAAGGAACCCTAAG 780
Query 781 GAGAGAGGAAGTGCTTCGGATTTATTGTCTCATCAGTTCTTGCGTGGTGAAGTGGTCTCC 840
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| | |||
Sbjct 781 GAGAGAGGAAGTGCTTCGGATTTATTGTTTCATTGGTTCTTGCGTGGTGAAGTGATATCC 840
Query 841 GGCTTCTCGCTTCCGCCGTTGAAGTTGAAGATTAAACTAGCACCGGAGAAACCGACGAAT 900
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGCTTCTCGCTGCCGCCATTGAAGTTGAAGATTAAACTAGCACCGGAGAAACCGACGAAT 900
Query 901 GTTTCGAAGAAGCCCTTGAAGCTAAAGATTATCCCACCAAAGCCCCCACAGTTTAAGAAA 960
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 901 TTTTCGAAGAAGCCCTTGAAGTTAAAGATTATTCCACCAAAGCCCCCACAGTTTAAGAAA 960
Query 961 GGTGGGATTAAACCCTTGAA-GTTGAAGATTATGCCTTTGAAGCCTCCAGCTTCTAGTTT 1019
| || ||| || |||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 961 GTTGAGATCAAGCCCTTGAAAGT-GAAGATTATGCCTCTGAAGCCTCCAGCTTCTAGTTT 1019
Query 1020 CGTTTCTGTTCAATAG 1035
||||||||||||||||
Sbjct 1020 CGTTTCTGTTCAATAG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5