BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42560.1
Length=2174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483350 jgi|Araly1|483350|fgenesh2_kg.4__2410__AT2G42560.1 2955 0.0
> Ahg483350 jgi|Araly1|483350|fgenesh2_kg.4__2410__AT2G42560.1
Length=2071
Score = 2955 bits (1600), Expect = 0.0
Identities = 1899/2040 (93%), Gaps = 34/2040 (2%)
Strand=Plus/Plus
Query 69 GGAAGTGATCGTTAGCATTAACAATGGCGTCAGAGCAAGCAAGGAGAGAAAACAAGGTGA 128
||||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 25 GGAAGTGATTGTTAGCATTAACAATGGCGTCGGAGCAAGCAAAGAGAGAGAACAAGGTGA 84
Query 129 CGGAGAGAGAAGTTCAGGTGGAGAAAGACAGAGTCCCAAAGATGACGAGTCATTTCGAGT 188
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 85 CGGAGAGAGAAGTTCAGGTGGAGAAAGACAGAGTCCCGAAGATGACGAGTCATTTCGAGT 144
Query 189 CCATGGCCGAAAAAGGCAAAGATTCCGACACACACAGGCATCAAACAGAAGGTGGTGGGA 248
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 145 CCATGGCCGAAAAAGGCAAAGATTTCGACACACAGAGGCATCAAACAGAAGGTGGTGGGA 204
Query 249 CACAGTTCGTGTCTCTCTCAGACAAGGGGAGTAACATGCCGGTTTCTGATGAAGGAGAGG 308
||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 205 CACAGTTCGTGTCACTTTCAGACAAGGGGAGTAACATGTCGGTTTCTAATGAAGGAGAGG 264
Query 309 GAGAGACGAAGATGAAGAGGACTCAGATGCCTCACTCCGTTGGAAAATTCGTTACTAGCA 368
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 265 GAGAGACGAAGATGAAGAGGACTCAGATGCCTCACTCCGTCGGTAAATTCGTTACGAGCA 324
Query 369 GCGATTCAGGAACAGGGAAGAAGAAGGATGAGAAAGAGGAGCATGAGAAGGCGTCGCTAG 428
|||| |||||| | |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 325 GCGAATCAGGACCGGGGAAGAAGAAGGATGAG--A-AGGAGCATGAGAAGGCGTCGCTAG 381
Query 429 AGGATATTCATGGGTATAGAGCCAATGCTCAGCAGAAGTCAATGGATAGTATAAAAGCAG 488
|||| |||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 382 AGGACATTCATGGATATAGAGCCAATGCTCAGCAGAAATCAATGGATACTATAAGAGCAG 441
Query 489 CAGAGGAAAGGTATAACAAGGCTAAGGAGAGTTTGAGCCATAGTGGACAAGAAGCTCGTG 548
|||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 442 CAGAGGAAAGATATAACAAGGCTAAGGAGAGTTTGAGCCATGGTGGACAAGAAG---GTC 498
Query 549 GAGGAAGAGGTGAAGAAATGGTGGGAAAAGGGCGGGACAGTGGTGTCCGTGTTTCTCACG 608
|| | | || | | |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 499 GA-G--G-GG-G-ACAAATGGAGGGAAAAGGGCGGGAAAGTGGTGTCCGTGTTTCTCACG 552
Query 609 TTGGGGCTGTTGGTGGCGGTGGTGGAG-GTG-AGGAAAAAGAGAGTGGTGTACATGGCTT 666
|||||||||||||||| | || |||| | | ||| ||||||||||||||| ||||||||
Sbjct 553 TTGGGGCTGTTGGTGGTGACGGAGGAGAG-GAAGG-AAAAGAGAGTGGTGTTCATGGCTT 610
Query 667 TCATGGGGAGAAAGCACGACATGCTGAGCTTTTGGCTGCCGGAGGTGAGGAGATGAGAGA 726
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 611 TCATGGGGAGAAAGCACGACATGCTAAGGTTTTGGCTGCCGGAGGTGAGGAGATGAGAGA 670
Query 727 ACGTGAAGGTAAAGAATCAGCAGGTGGTGTTGGTGGTCGTAGCGTAAAAGATACGGTAGC 786
||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct 671 ACGTGAAGGTAAAGAGTCAGCCGGTGGTGTTGGTGGTCGGAGTGTAAAAGATACGGTGGC 730
Query 787 CGAGAAAGGACAGCAAGCTAAGGAAAGTGTAGGAGAAGGTGCTCAGAAAGCGGGCAGTGC 846
||||||||||| ||||||||||| |||||| ||| |||||||||||||||| || || ||
Sbjct 731 CGAGAAAGGACGGCAAGCTAAGGGAAGTGTTGGACAAGGTGCTCAGAAAGCCGGAAGCGC 790
Query 847 TACGAGTGAGAAAGCTCAGAGAGCTTCCGAGTATGCAACAGAGAAAGGAAAAGAAGCTGG 906
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 791 TGCCAGTGAGAAAGCTCAGAGAGCTTCGGAGTATGCAACAGAGAAAGGAAAAGAAGCTGG 850
Query 907 AAATATGACAGCTGAACAGGCGGCGAGAGCAAAAGACTATGCTCTGCAGAAAGCTGTTGA 966
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 851 AAATGTGACAGCTGAACAGGCGGCAAGAGCAAAAGACTATGCTCTGCAGAAAGCTGTTGA 910
Query 967 AGCTAAAGAGACTGCGGCGGAGAAAGCTCAGAGAGCTTCCGAGTATATGAAGGAAACAGG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AGCTAAAGAGACTGCGGCGGAGAAAGCTCAGAGAGCTTCCGAGTATATGAAGGAAACAGG 970
Query 1027 AAGCACAGCGGCTGAACAGGCTGCGAGAGCTAAAGATTACACTCTT-CAGAAAGCTGTGG 1085
|||||| ||||||||||||||||||||||| ||||| |||||| || |||||||||||||
Sbjct 971 AAGCACCGCGGCTGAACAGGCTGCGAGAGCAAAAGACTACACT-TTGCAGAAAGCTGTGG 1029
Query 1086 AAGCTAAAGATGTTGCAGCTGAGAAAGCTCAGAGAGCTTCAGAATACATGACAGAGACAG 1145
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1030 AAGCTAAAGATGTTGCAGCTGAGAAAGCTCAGAGAGCTTCAGAGTATATGACTGAGACAG 1089
Query 1146 GAAAACAAGCCGGAAATGTTGCAGCTCAGAAAGGGCAAGAGGCAGCTTCAATGACAGCAA 1205
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1090 GAAAACAAGCCGGAAATGTTGCAGCTCAGAAAGGACAAGAGGCGGCTTCAATGACAGCAA 1149
Query 1206 AAGCTAAAGATTATACTGTTCAGAAAGCCGGTGAAGCAGCTGGGTACATAAAAGAAACGA 1265
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1150 AAGCTAAAGATTACACTGTTCAGAAAGCCGGTGAAGCAGCTGGGTACGTAAAAGAAACGA 1209
Query 1266 CAGTGGAAGGAGGAAAAGGAGCTGCACATTATGCAGGAGTGGCAGCTGAGAAAGCCGCTG 1325
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1210 CGGTGGAAGGAGGAAAAGGAGCTGCACATTATGCCGGAGTGGCCGCTGAGAAAGCCGCTG 1269
Query 1326 CGGTTGGGTGGACAGCGGCACATTTCACCACGGAGAAAGTGGTGCAAGGGACGAAAGCGG 1385
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1270 CGGTTGGGTGGACAGCGGCACATTTCACCACGGAGAAAGTGGTGCAAGGGACAAAAGCGG 1329
Query 1386 TTGCAGGTACAGTGGAAGGTGCTGTGGGGTACGCAGGGCATAAGGCGGTGGAAGTAGGAT 1445
|||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1330 TTGCCGGTACAGTGGAAGGTGCGGTGGGGTATGCAGGGCATAAGGCTGTGGAAGTAGGAT 1389
Query 1446 CTAAGGCAGTGGACTTGACTAAGGAGAAAGCTGCAGTGGCTGCTGATACGGTGGTTGGGT 1505
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1390 CTAAGGCAGTGGATTTGACTAAGGAGAAAGCTGCAGTGGCTGCTGATACGGTGGTCGGGT 1449
Query 1506 ATACGGCGAGGAAGAAAGAGGAAGCTCAACACAGAGACCAAGAGATGCATCAGGGAGGTG 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 ATACGGCGAGGAAGAAAGAGGAAGCTCAACACAGAGACCAAGAGATGCATCAGGGAGGTG 1509
Query 1566 AGGAAGAAAAGCAACCAGGGTTTGTCT-CAGGAGCAAGGAGAGACTTTGGAGAAGAGTAC 1624
||||||| |||| |||||||||||| | ||| ||||| ||||| || |||||||||||||
Sbjct 1510 AGGAAGAGAAGCGACCAGGGTTTGT-TACAGAAGCAAAGAGAGGCTATGGAGAAGAGTAC 1568
Query 1625 GG-GGAAGAAAGAGGGAGTGAGAAAGATGTCTACGGCTATGGAGCAAAAGGAATACCCGG 1683
|| ||| |||||||||||||||||||||||||| ||||||||| ||||||| | ||||
Sbjct 1569 GGAGGA-GAAAGAGGGAGTGAGAAAGATGTCTATGGCTATGGACCAAAAGGCACGGCCGG 1627
Query 1684 AGAAGGGAGGGGAGATGTTGGGGAGGCAGAGTACGGA--AG-A-G-GG-AGTGAGAAAGA 1737
||||| |||| |||| ||||| ||||| ||||||||| || | | || |||||||||||
Sbjct 1628 AGAAGCGAGGAGAGACGTTGGAGAGGCGGAGTACGGAGGAGGAAGAGGGAGTGAGAAAGA 1687
Query 1738 TGTCTTCGGATATGGACCAAAAGGCACGGTCGAAGAAGCAAGGAGAGACGTTGGAGAAGA 1797
|||||||||||||||||||||||||||||||| |||| | |||||| |||||||||| ||
Sbjct 1688 TGTCTTCGGATATGGACCAAAAGGCACGGTCGGAGAATCGAGGAGACACGTTGGAGAGGA 1747
Query 1798 ATACGGAGGAGGAAGAGGCAGTGAGAGATATGTTGAAGAAGAAGGGGTTGGAGCGGGAGG 1857
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1748 ATACGGAGGAGGAAGAGGCAGTGAGAGATATGTCGAAGAAGAAGGGGTTGGAGCGGGAGG 1807
Query 1858 GGTGCTTGGGGCAATCGGCGAGACTATAGCTGAGATTGCACAGACGACAAAGAACATAGT 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1808 GGTGCTTGGGGCAATCGGCGAGACTATAGCTGAGATTGCACAGACGACAAAGAACATAGT 1867
Query 1918 GATTGGTGATGCGCCTGTGAGGACACATGAGCATGGAACTACTGATCCTGACTATATGAG 1977
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1868 GATTGGTGATGATCCTGTGAGGACACATGAACATGGAACTACTGATCCTGACTATATGAG 1927
Query 1978 ACGGGAACATGGACAACGTTGAAAAGTAATGTATAATGGAGAAAtgttttggtgtgtttt 2037
|| | ||| ||||||||||||||| ||||||| | ||| ||||||||||| || ||||
Sbjct 1928 ACATGTACAAGGACAACGTTGAAAACTAATGTA-A-TGGTGAAATGTTTTG-TGGGTTTC 1984
Query 2038 tgctttacttaaaaaggtcttttgtttttttGTATGTAAATAACAA-GAAGCTCTGTTTG 2096
|||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1985 TGCTTTTCTTAAAAAGGTCTTTTGTTTTT--GTATGTAAATAACAAAGAAGCTCTGTTTG 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81817846260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5