BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42570.1
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483351 jgi|Araly1|483351|fgenesh2_kg.4__2411__AT2G42570.1 2156 0.0
> Ahg483351 jgi|Araly1|483351|fgenesh2_kg.4__2411__AT2G42570.1
Length=1379
Score = 2156 bits (1167), Expect = 0.0
Identities = 1331/1404 (95%), Gaps = 35/1404 (2%)
Strand=Plus/Plus
Query 1 CATGTGATGTGAACAATCTCACTCTCTTTCTCTATCTCTCTTTCGAGTTTCTTTGGAGTA 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1 CATGTGATGTGAACAATCTCACTCTCTTTCTCTATCTCTCTTTTGAGTTTC-TTGGAGTA 59
Query 61 TTATATAACAAATCAGTCCAAGACACCTCTTTTCTCACACCAATCTCGCTCTCACCACAA 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 60 TTATATAACAAATCAGTCCAAGGCACCTCTTTTCTCACACCAATCTCGCTCTCACCAAAA 119
Query 121 AACAGAG------AATCTCAGATCGAAGAAGCA-A-AGAAAGAGAGAATGGGTTTCACTT 172
||||||| ||||||||||||||||| || | || ||||||||||||||||||||
Sbjct 120 AACAGAGAATCTCAATCTCAGATCGAAGAAACATAGTGAGAGAGAGAATGGGTTTCACTT 179
Query 173 CCCGAGGAAACCcttcttttctcttcttcttcttcttcttcctctgtctctccacagtct 232
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 180 CCCGAGGAAACCCTTCTTTTCTCTTCTTCTTCTTC-T-TT-CTCTGTCTCTCCACAGTCT 236
Query 233 ctGCTTACATCAACAGCACAAGCAGCAATAAT-GATGAAGTAAGAAGAGAGCTAGCTTCT 291
||||||||||||||| |||||||||||| ||| || |||| |||||||||||||||||||
Sbjct 237 CTGCTTACATCAACAACACAAGCAGCAACAATGGA-GAAGCAAGAAGAGAGCTAGCTTCT 295
Query 292 GGGAGATGTAATTGGTTTAGAGGGAATTGGGTTTATGATGTAAAGTACCCACTTTATGAT 351
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 296 GGGAGATGTAATTGGTTTAGAGGGAATTGGGTTTATGATGCAAAGTATCCACTTTATGAT 355
Query 352 CCTTATAAATGTCCATTCATAGATCCACAGTTTAACTGTAAGAAGTATGGTCGTCCTGAC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCTTATAAATGTCCATTCATAGATCCACAGTTTAACTGTAAGAAGTATGGTCGTCCTGAC 415
Query 412 AATGCTTACCTTAAGTATCGATGGCAACCATCTTCTTGCTCTCTCCCCAGATTCAATGGG 471
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AATGCTTACCTTAAGTTTAGATGGCAACCATCTTCTTGCTCTCTCCCCAGATTCAATGGG 475
Query 472 TTGTATTTCTTGAGGAGGATGAGAGGGAAGAAGATAATGTTCGTTGGAGATTCACTAAGC 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTGTATTTCTTGAGGAGGATGAGAGGGAAGAAGATAATGTTCGTTGGAGATTCACTAAGC 535
Query 532 ACAAACATGTGGCAATCTCTTGCTTGTCTAATTCACTCTTGGGTTCCTAACACTCGTTAC 591
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACTAACATGTGGCAATCTCTTGCTTGTCTAATTCACTCTTGGGTTCCTAACACTCGTTAC 595
Query 592 ACTCTTATTCGCCAAAAGGGTCTTGCTTCACTTACCTTTGAGGAATACGGAGTGACGTTG 651
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 596 ACTCTTCTTCGCCAAAAGGGTCTCGCTTCACTTACCTTTGAGGAATACGGAGTGACGTTG 655
Query 652 TTGCTATACAGAACACAGTTCTTGGTAGATTTGAATGTGGAGAAAGTTGGGAGAGTGCTT 711
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 656 TTGCTATACAGAACACAGTTCTTAGTAGATTTGAATGTGGAGAAAGTTGGGAGAGTTCTT 715
Query 712 AAGCTTGATTCCATTAAGCAAGGGAATATGTGGAGAGGCATGGACGTTTTGATTTTCAAC 771
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 716 AAGCTAGATTCCATTAAGCAAGGCAACATGTGGAGAGGCATGGACGTTTTGATTTTCAAC 775
Query 772 TCGTGGCATTGGTGGACACACACCGAACACATTCAGCCGTGGGATTACATGGAAGATGGG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TCGTGGCATTGGTGGACACACACCGAACACATTCAGCCGTGGGATTACATGGAAGATGGG 835
Query 832 AATAGGTTGTACAAAGACATGAACCGGCTCGTTGCTTTCTACAAAGGAATGACCACTTGG 891
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 836 AATAGATTGTACAAAGACATGAACCGGCTCGTTGCTTTCTATAAAGGAATGACCACTTGG 895
Query 892 GCTCGATGGGTTAATGCTTACGTCGATCCTTCTAAGACTAAAGTCTTCTTCAACGGCGTG 951
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GCTCGATGGGTTAATACTTACGTCGATCCTTCTAAGACTAAAGTCTTCTTCAACGGCGTG 955
Query 952 TCTCCTACTCATTACGAGGGAAAGGATTGGGGAGAGCCAATGAACTCATGTAGGAGTCAA 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 956 TCTCCTACTCATTACGAGGGAAAGGATTGGGGAGAGCCAATGAACTCATGTAAGAGTCAG 1015
Query 1012 ACGCAGCCATTTTACGGAAGGAAGTATCCAGGAGGGACACCAATGGCTTGGGT-GATTCT 1070
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |
Sbjct 1016 ACGCAGCCATTTTACGGGAGGAAGTATCCAGGAGGGACACCAATGGCTTGGGTAGTTT-T 1074
Query 1071 AAACAAAGTGATGAGGAGATTGAAGAAACCGGTCCATTGGCTCGATATAACCGGTCTGTC 1130
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1075 AAACAAAGTGATGAGGAGATTGAAGAAACCGGTCCATTGGCTAGATATAACCGGTCTGTC 1134
Query 1131 TCAGCTTCGTAAAGATGCTCATCCTTCTGCTTTCAGTGGGAACCATCCTGGTAATGACTG 1190
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1135 TCAGCTTCGTAAAGATGGTCATCCTTCTGCTTTCAGTGGGAACCATCCTGGTAACGACTG 1194
Query 1191 TAGCCATTGGTGTCTCCCTGGTTTGCCTGATACTTGGAACTTGCTCTTTTACTCTACTCT 1250
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CAGCCATTGGTGTCTTCCTGGTTTGCCTGATACTTGGAACTTGCTCTTTTACTCTACTCT 1254
Query 1251 TTTCTCTTCTTAATTAATTCCTTTCTCATCAATGTATAAGTTAACTTAAAACAACAATCA 1310
|||||||| | | || | ||||||||||||||||||||||||||||| |||||||||
Sbjct 1255 TTTCTCTT---ACT-AA--C-TTTCTCATCAATGTATAAGTTAACTTAAAGCAACAATCA 1307
Query 1311 ATTATTTTTAGTTATCTTTCACTATGGTTGTTTGTTTCTTGACTGAAACAACTCTTAAAT 1370
||||||||||||||||||| | || || ||||||||||| ||||||| |||
Sbjct 1308 ATTATTTTTAGTTATCTTT---T-TGATT--------CTTGACTGAAATAACTCTTTAAT 1355
Query 1371 AAGACCAACGCACTTGACTCTGTG 1394
||||||||||||||||||||||||
Sbjct 1356 AAGACCAACGCACTTGACTCTGTG 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52107455160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5