BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42580.1
Length=2473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483352 jgi|Araly1|483352|fgenesh2_kg.4__2412__AT2G42580.1 3570 0.0
Ahg486314 jgi|Araly1|486314|fgenesh2_kg.5__2306__AT3G58620.1 1206 0.0
> Ahg483352 jgi|Araly1|483352|fgenesh2_kg.4__2412__AT2G42580.1
Length=2410
Score = 3570 bits (1933), Expect = 0.0
Identities = 2255/2408 (94%), Gaps = 32/2408 (1%)
Strand=Plus/Plus
Query 71 TGACTTCTCTGAGAAGAAGAAA-AGGAAGCTGAGTCTCATTTTAGATTCAGCTCACGAGG 129
|||||||| ||||||||||||| | ||||||||||||| |||||||||||| ||||||
Sbjct 30 TGACTTCTTTGAGAAGAAGAAAGAAGAAGCTGAGTCTC--GTTAGATTCAGCTTACGAGG 87
Query 130 AAGTGACGACGATGTCTCATTCTAGAAGACTTTCGTTGGAACCTGCTATAGATTCAATCA 189
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 AAGT------GATGTCTCATTCTAGAAGACTTTCGTTGGAACCTGCTATAGATTCAATCA 141
Query 190 CTGGTCGATTTCGTGATTTACAGAGAAATGATGATGACGTCAACAAACCTGATTTTCGAG 249
| ||||||||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 142 CAGGTCGATTTCGTGATTTACAGAG-AA--ACGATGACGTCAACAAACCTGATTTTCGAG 198
Query 250 AACTCGATCTAGGTTCTCCTGTTTCTACCTTAATGCCACGTGGCTCTGCTTCTTCTTCCG 309
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 AACTCGATCTGGGTTCTCCTGTTTCTACCTTAATGCCACGTGGCTCTGCTTCTTCTTCCG 258
Query 310 CTGCTGCGACTCCTACTAGCAGCTCTGGCTCTTCTGGCTCTGCTTCTGGTAAACCGTCGG 369
| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 259 CCGCTGCGACTCCTACGAGCAGCTCTGGTTCTTCAGGCTCTGCTTCTGGTAAACCGTCGG 318
Query 370 TGAGTTCTCAGATGGCTAAACGGTTAGATG-ATGCTTACAAGAGTCATTCCGGTGAGCTT 428
||||||||||||||| ||| |||||||| | ||| ||||| |||||| ||||||||||||
Sbjct 319 TGAGTTCTCAGATGGGTAAGCGGTTAGA-GAATGGTTACAGGAGTCACTCCGGTGAGCTT 377
Query 429 TCTAGCCCCGGATCCGGAATGCCGACCACGACCCGGATTCTTAAACCGGGTCATAGAAGA 488
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 378 TCTAGCCCCGGATCCGGAATGCCG---ACGACCCGGAATCTTAAACCGGGTCATAGAAGA 434
Query 489 TCTTCTTCTACTGGCACGCCTTTGATCTTCTCTGGCTCTAGCTTTACTTCAGCAACGAGT 548
||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 435 TCTTCCTCTACTGGAACGCCGTTGATCTTCTCTGGCTCTAGCTTTACCTCAGCAACGAGT 494
Query 549 CACACCTCGCCACAAGGAGGTGGTAGCGGTGCTACGTCGGCAGTGTCTCCCAATACTGGC 608
||||||||||| |||||||||||||||||||||||||| |||||||| || | | | |||
Sbjct 495 CACACCTCGCCGCAAGGAGGTGGTAGCGGTGCTACGTCTGCAGTGTCGCCGAGTCCCGGC 554
Query 609 GTTTTACCGGCGGGAAATATTTGTCCGTCGGGTCGGATCTTGAAAACTGGAATGGCGTCT 668
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 555 GTTTTACCGGCGGGAAACATTTGTCCCTCGGGTCGGATCTTGAAAACCGGAATGGCGTCT 614
Query 669 CGGACTTCAAGTAGGACTGAGACTCTATGCACAGGAACTGGTAATTACGGACATGGAAAC 728
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 615 CGGACCTCAAGTAGGACTGAGACTCTGTGCACAGGAACTGGAAATTACGGACATGGAAAC 674
Query 729 GTTGTACGCAGCGGCGGAGGAGGAGGAACCAGCGGAAAGGCGGTGAGAGTGGCGGAGAAT 788
||||||||||| ||| | |||||||| |||||||||| ||||||||| |||||||||
Sbjct 675 GTTGTACGCAGTGGC---GCAGGAGGAAGCAGCGGAAAGACGGTGAGAGCGGCGGAGAAC 731
Query 789 GGCGAAAACCCGGAGGAGTTGAAGAGAATGGGGAATGATATGTATAGGAGAGGGAGTTTC 848
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 732 GGCGAAAATCCGGAGGAGTTGAAGAGAATGGGGAATGATATGTATAGGAGAGGGAATTTC 791
Query 849 TCTGAAGCTCTGTCGCTTTATGACAGAGCAATTTTGATTTCACCGGGAAATGCAGCTTAC 908
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 792 TCTGAAGCTCTGTCGCTTTACGACAGAGCAATTTCGATTTCACCGGAAAATGCAGCTTAC 851
Query 909 AGAAGCAACCGTGCCGCGGCTTTAACGGCATTGAGGCGGTTAGGAGAAGCCGTTAAAGAA 968
|||||||||||||| || || |||||||| || || ||||||||||||||||||||||||
Sbjct 852 AGAAGCAACCGTGCGGCAGCGTTAACGGCGTTAAGACGGTTAGGAGAAGCCGTTAAAGAA 911
Query 969 TGTCTTGAAGCTGTTAGGATTGATCCTTCTTACTCCAGAGCTCACCAAAGACTTGCTTCT 1028
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGTCTTGAAGCTGTTAGGCTTGATCCTTCTTACTCCAGAGCTCACCAAAGACTTGCTTCT 971
Query 1029 CTCTATCTCAGATTGGGTGAAGCTGAGAATGCAAGACGTCACATTTGTTTTTCTGGTCAA 1088
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 972 CTATATCTCAGATTGGGAGAAGCTGAGAATGCAAGACGTCATATTTGTTTTTCCGGGCAA 1031
Query 1089 TGTCCGGATCAAGCTGATCTCCAACGGCTACAGACGCTGGAGAAGCATCTCCGACGATGC 1148
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1032 TGTCCGGATCAAGCTGATCTCCAACGGCTGCAGACACTGGAGAAGCATCTCCGGCGATGC 1091
Query 1149 TGGGAGGCTCGAAAGATTGGAGATTGGAAAACCGCGATTAAGGAAACCGATGCAGCCATT 1208
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TGGGAGGCTCGGAAGATTGGAGATTGGAAAACCGCGATTAAGGAAACCGATGCAGCCATT 1151
Query 1209 GCAAACGGCGCTGATTCGTCTCCTCAGCTTGTAGCTTGTAAAGCAGAAGCCTTTTTGCGT 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GCAAACGGCGCTGATTCGTCTCCTCAGCTTGTAGCTTGTAAAGCAGAAGCCTTTTTGCGT 1211
Query 1269 CTTAAGCAAATAGAGGATTCGGATTTTTGTGTATCTTGCATTCCAAGATTGGATCATCAT 1328
||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1212 CTTAACCAAATAGAGGATTCAGATTTTTGTCTATCTTGCATTCCAAGATTGGATCATCAT 1271
Query 1329 TACCATTCTCAACCGCAGGTGAAACTCTTTGGTATGGTAGTTGAAGCTTATGTGCTCTGT 1388
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TACCATTCTCAGCCGCAGGCGAAACTCTTTGGTATGGTAGTTGAAGCTTATGTGCTCTGT 1331
Query 1389 ATCCAAGCTCAAGTTGATATGGCATTAGGAAGATTTGAGAATGCGGTTGTCAAGGCAGAG 1448
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1332 ATCCAATCTCAAGTTGATATGGCATTAGGAAGATTTGAGAATGCGGTTGTAAAGGCAGAG 1391
Query 1449 AGAGCTGCGATGCTTGATCAAACCAATCCTGAGGTTGTATCAGTTTTAAACAATGTGAAG 1508
|||||||| ||||| ||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 1392 AGAGCTGCAATGCTCGATCAGACCAATCCTGAGGTAGCATCAGTTTTAAACAATGTGAAG 1451
Query 1509 ATGGTTGTGCGGGCACGTACTCGTGGTAATGAGCTATTTAGTTCGGGGAGATTCTCGGAA 1568
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 1452 ATGGTTGTGCGGGCACGTACTCGTGGTAATGAGTTGTTTAGTTCGGGGAGATTCTTGGAT 1511
Query 1569 GCGTGTGTAGCTTATGGAGACGGTCTCAAGCAAGATGACTCCAATTCGGTTTTGTACTGC 1628
||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1512 GCGAGTGTTGCTTATGGAGACGGTCTCAAGCACGATGAATCCAATTCGGTTTTGTACTGC 1571
Query 1629 AACAGAGCAGCGTGTTGGTATAAGCTCGGTTTGTGGGAGAAATCTGTTGAAGATTGTAAC 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 AACAGAGCAGCGTGTTGGTATAAGCTCGGTTTGTGGGAGAAATCTGTTGAAGATTGTAAC 1631
Query 1689 CATGCGCTCAAAAGCCAGCCTAGTTACATCAAGGCACTTCTACGTAGGGCTGCTTCATAT 1748
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1632 CATGCGCTCAAAATCCAGCCTAGTTACATCAAGGCACTTCTACGAAGGGCTGCTTCTTAT 1691
Query 1749 GGAAAGCTTGGTAGGTGGGAGGATGCGGTTAAAGATTATGAGTTCTTGAGAAGAGAACTT 1808
|||||||||||| ||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 1692 GGAAAGCTTGGTCGGTGGGAGGATGCAGTCAAAGATTATGAGTTCTTGAGAAGGGAACTT 1751
Query 1809 CCAGGAGACAGTGAAGTTGCAGAGTCTCTAGAGAGAGCGAAAACAGTGCTAATGAACAGA 1868
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1752 CCAGGAGACAGCGAAGTTGCAGAGTCTCTAGAGAGAGCGAAAACCGTGCTAATGAACAGA 1811
Query 1869 AGCCAAGAATCTAAAAGCCTAGGTTTCAATAATGAAGTTGAAGCGGTTTCGACTTTGGAT 1928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812 AGCCAAGAATCTAAAAGCCTAGGTTTCAATAATGAAGTTGAAGCGGTTTCGACTTTGGAT 1871
Query 1929 AAGTTCAAGAAATCCGTAGCACTTCCCGGTGTCTCTGTATTTCATTTCAAATCATCATCA 1988
|||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1872 AAGTTCAAGAGCTCGGTAGCACTTCCCGGTGTCACTGTATTTCATTTCAAATCATCATCA 1931
Query 1989 AACCGACAATGCGAAGAAATTTCTCCATTCATCAACACTTTATGTCTTCGGTATCCATTA 2048
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1932 AACCGACAATGCGAAGAAATTTCTCCTTTCATCAACACTTTATGTCTCCGGTATCCATTA 1991
Query 2049 GTACATTTCTTTATGGTGGATGTGGAGGAGAGCATGGCGTTGGCGAAAGCAGAGAGTATC 2108
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1992 GTACATTTCTTTAAGGTGGATGTGGAGGAGAGCATGGCATTGGCGAAAGCAGAGAGTATC 2051
Query 2109 AGGAAAGTTCCGACATTTAAGATGTACAAGAATGGAGATAAAGTGAAGGAGATGGTTTGT 2168
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052 AGGAAAGTTCCTACATTCAAGATGTACAAGAATGGAGATAAAGTGAAGGAGATGGTTTGT 2111
Query 2169 CCTAGCCATCAGTTTCTAGAGGACTCTATAAAGCATTTCCTCTTATGATTGAAAAAGCCC 2228
|| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 2112 CCGAGCCATCAGTTTCTAGAGGACTCTATAAAGCATTTCCTCTTATAACTGAAAAAGCCC 2171
Query 2229 TATCATCATTATCTGCTTCCCTATGATTCGATCCGAATAGCCTATTTAAAAGACTCAGAA 2288
||||||| || |||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 2172 TATCATCGTTCTCTGCTTCCCTATGATTCGATCCGAAGAGCCTATTCAAA-GACTCAGAA 2230
Query 2289 AGCATTCTATGTGAAAGATGGGAAAGAGCtcttctgtcaaattcaacaaactattcattc 2348
|| | ||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2231 AGTAATCTTTGTTAAAGATGGGAAAGAGCTATTCTGTCAAATTCAACAAACTATTCATTC 2290
Query 2349 tttcttcttatt--cgattctaattcttctttatttattttttGGAGTTTGGCTCTGCTT 2406
||||||||| || |||||||||||||| ||| ||| | | ||||| ||||||||
Sbjct 2291 TTTCTTCTTTTTTTCGATTCTAATTCTT-TTT-TTT-T-----GAAGTTTCACTCTGCTT 2342
Query 2407 GCTTTGGC-ATATTACGTATGGGTAAATGTTCGCAATGATTCAAGAAATGCAAGCTTCAT 2465
|||||||| ||||||| ||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 2343 GCTTTGGCTATATTACATATTAGTAAATGTTCGCAAGGATTCAAGAAATACAAGCTTCAT 2402
Query 2466 TATCTATT 2473
||||||||
Sbjct 2403 TATCTATT 2410
> Ahg486314 jgi|Araly1|486314|fgenesh2_kg.5__2306__AT3G58620.1
Length=2117
Score = 1206 bits (653), Expect = 0.0
Identities = 1332/1649 (81%), Gaps = 89/1649 (5%)
Strand=Plus/Plus
Query 606 GGCGTTTTACCGGCGGGAAATATTTGTCCGTCGGGTCGGATCT-TGAAAACTGGAATGGC 664
||||||||||| | ||||| ||||| |||||||| |||| | ||||||| ||||||||
Sbjct 494 GGCGTTTTACCTACCGGAAACATTTGCCCGTCGGGGAGGAT-TATGAAAACCGGAATGGC 552
Query 665 GT-CTCGGA-CTTCAAG-TAGGA-CTGAGACTCTATGCACAGGAACTGG-TAATTACGGA 719
| | | || | || | || || | ||||||||||||||||| || || || |||||
Sbjct 553 -TACAC-GAGCCTC-TGTTA-GACCGGAGACTCTATGCACAGGCAC-GGCCAACTACGGC 607
Query 720 CATGGAAACGTTGTACGCAGCGGCGGAGGAGGAGGAACCA-GCG--GAAAGGCGGTGAGA 776
|| |||||| || | |||||||||||| ||| || || ||| |||| || |
Sbjct 608 CACGGAAACATTATCCGCAGCGGCGGA-AAGG-TGAGTCACGCGACGAAA-GC-----G- 658
Query 777 GTGGCGGAGAATGGCGAAAACCCGGAGGAGTTGAAGAGAATGG--GG-AATGATATGTAT 833
| |||||| ||||| | | || | |||||| | | |||| || || || || ||||||
Sbjct 659 GCGGCGGA-AATGG-G-AGACTCAGAGGAGGCG-A-AGAA-GGCAGGTAACGAAATGTAT 712
Query 834 AGGAGAGGGAGTTTCTCTGAAGC-TCTGTCGCTTTATGACAGAGCAATTTTGATT-TCAC 891
|||| ||||| || | ||||||| | || | ||||| |||||||||| | | ||| ||||
Sbjct 713 AGGAAAGGGAATTACGCTGAAGCAT-TGGCTCTTTACGACAGAGCAA-TCTCATTGTCAC 770
Query 892 CGGGAAATGCAGCTTACAGAAGCAACCGTGCCGCGGCTTTAACGGCATTGA-GGCGGTTA 950
||| |||| |||||||||||||||| || || ||||| || | || | | || |||||
Sbjct 771 CGGAAAATCCAGCTTACAGAAGCAATCGCGCGGCGGCCTTGGCTGC-GTCAGGGAGGTTA 829
Query 951 GGA-GAAGCCGTTAAAGAATGTCTTGAAGCTGTTAGGATT-GATCCTTCTTACTCCAGAG 1008
|| ||||| ||||||||||| ||||||||||| | |||| |||||||||||| | ||||
Sbjct 830 -GAGGAAGCAGTTAAAGAATGCCTTGAAGCTGTGA-GATTCGATCCTTCTTACGCTAGAG 887
Query 1009 CTCACCAAAGACTTGCTTCTCTCTATCTCAGATTGGGTGAAGCTGAGAATGCAAGACGTC 1068
|||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 888 CTCATCAGAGACTCGCTTCTCTCTATCTCAGATTGGGAGAAGCTGAGAATGCGAGACGTC 947
Query 1069 A-CATTTGTTTTTCTGGTCAATGTCCGGATCAAGCTGATCT-CCAACGGCTACAGACGCT 1126
| | |||||||||| || |||||||| |||||||| ||| | | | || | ||||||||
Sbjct 948 ATC-TTTGTTTTTCCGGGCAATGTCCCGATCAAGCCGATTTGCGGA-GGTTGCAGACGCT 1005
Query 1127 GGAGAAGCATCTCCGAC-GATGCT-GGGAGGCTCGAAAGATTGGAGATTGGAAAACCGCG 1184
||||| |||||| ||| | || | ||||||||||||||| || ||||||| ||| |
Sbjct 1006 TGAGAAACATCTCAGACTG-TG-TACGGAGGCTCGAAAGATCGGTGATTGGAGAACGGTT 1063
Query 1185 ATTAAG-GAAACCGATGCAGCCATTGCAAACGGCGCTGATTCGTCTCCTCAGCTTGTAGC 1243
||| || |||| |||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 1064 ATT-AGCGAAATCGATGCAGCCATTGCAAATGGAGCTGATTCTTCTCCTCAGCTTGTAGC 1122
Query 1244 TTGTAAAGCAGAAGCCTTTTTGCGTCTTAAGCAAATAGAGGATTCGGATTTTTGTGTATC 1303
|||||||||||||||||||||||| ||| | || ||| ||||||||||||| ||| | ||
Sbjct 1123 TTGTAAAGCAGAAGCCTTTTTGCGGCTTCATCAGATAAAGGATTCGGATTTATGTCTGTC 1182
Query 1304 TTGCATTCCAAG-ATTGGATCATCATTACCATTCTCAACCGCAGGTGAAACTCTTTGGTA 1362
| ||||| || || |||||||||| | || ||||||| | | |||||| |||||||
Sbjct 1183 TAATATTCCGAGGAT-GGATCATCAT--C-ATACTCAACCACCTGCGAAACTGTTTGGTA 1238
Query 1363 TGGTA-GTTGAAGCTTATGTGCTCTGTATCCAAGCTCAAGTTGATATGGCATTAGGAAGA 1421
|| || || || ||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1239 TGATATGT-GATGCTTATGTGCTCTGTGTTCAAGCTCAAGTTGATATGGCGTTAGGAAGA 1297
Query 1422 TTTGAGAATGCGGTTGTCAAGGCAGAGAGAGCTGCGATGCTTGATCAAACCAAT---CCT 1478
||||||| ||||||||||||||| |||||||| || | ||||||| | |||| ||
Sbjct 1298 TTTGAGAGTGCGGTTGTCAAGGCGGAGAGAGCCATGACGATTGATCATAGCAATAGTCCC 1357
Query 1479 GAGGTTGTATCAGTTTTAAACAATGTGAAGA-TGGTTGTGCGG--GCACGTACTCGTGGT 1535
||||| ||||| || |||||||||||||||| | ||| || || ||||| |||||
Sbjct 1358 GAGGTAGTATCGGTCTTAAACAATGTGAAGAAT--TTG-GCAAAAGCTCGTACCCGTGGA 1414
Query 1536 AATGAGCTATTTAGTTCGGGGAGATTCTCGGAAGCGTGTGTAGCTTATGGAGACGGTCTC 1595
|| ||||| |||||||| ||||||| ||| || ||| |||| |||||||| || || |||
Sbjct 1415 AACGAGCTCTTTAGTTCAGGGAGATACTCAGAGGCGAGTGTGGCTTATGGGGATGGACTC 1474
Query 1596 AAGCAAGATGACTC-CAATTCGGTTTTGTACTGCAACAGAGCAGCGTGTTGGTATAAGCT 1654
||| | || || ||| ||||||||||| || || ||||| || ||||||| ||| ||
Sbjct 1475 AAGTTCGGTG-CTTTCAACTCGGTTTTGTATTGTAATAGAGCGGCATGTTGGTTTAAACT 1533
Query 1655 CGGTTTGTGGGAGAAATCTGTTGAAGATTGTAACCATGCGCTCAA-AAGCCAGCCTAGTT 1713
|||| ||||||||||||||||||| |||||||| || ||||| || || |||||||||||
Sbjct 1534 CGGTATGTGGGAGAAATCTGTTGATGATTGTAATCAAGCGCT-AAGAATCCAGCCTAGTT 1592
Query 1714 ACATCAAGGCACTTCTACGTAGGGCTGCTTCATATGGAAAGCTTGGTAGGTGGGAGGATG 1773
||| ||| || ||||| || || ||||||||||||||||||||||| | ||||||||||
Sbjct 1593 ACACCAAAGCTCTTCTCCGAAGAGCTGCTTCATATGGAAAGCTTGGCCGATGGGAGGATG 1652
Query 1774 CGGTTAAAGATTATGA-GTTCTTGAGAAGAG-AACTTCCAGGAGACAGTGAAGTTGCAGA 1831
|||| | ||||||||| || ||||||| || |||| ||||||||||| || ||||| ||
Sbjct 1653 CGGTCAGAGATTATGAAGTA-TTGAGAA-AGGAACTACCAGGAGACAGCGAGGTTGCTGA 1710
Query 1832 GTCTCTAGAGAGAGCGAAA-ACAG-TGCTAAT-GAACAGAAGCC-AAGAATCTAAA-AGC 1886
|||| || ||||||| || || | | ||| | ||||| | || ||||| ||||| | |
Sbjct 1711 GTCTTTACAGAGAGC-AAGGACCGCT-CTA-TCGAACATAT-CCGAAGAACCTAAATA-C 1765
Query 1887 CTAGGTTTCAATAATGAAGTTGAAGCGGTTTCGACTTTGGATAAGTTCAAGAAATCCGTA 1946
|| || |||||||| |||||||||| |||||||| | |||||||| |||| | |
Sbjct 1766 CTGGGATTCAATAACGAAGTTGAAGAAGTTTCGACCATAGATAAGTTTAAGACCGCAACA 1825
Query 1947 GCACTTCCCGGTGTCTCTGTATTTCATTTCAAATCATCATCAAACCGACAATGCGAAGAA 2006
|||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 1826 TCACTTCCCGGAATCTGTGTGTTTCATTTCAAATCATCATCAAACCGACAAAGCGAAGCA 1885
Query 2007 ATTTCTCCATTCATCAACACTTTATGTCTT-CGGTATCCATTAGTACATTTCTTTATGGT 2065
|| |||||||| ||||||||||||| ||| || ||||||||||| |||||||| | |||
Sbjct 1886 ATATCTCCATTTGTCAACACTTTATG-CTTACGATATCCATTAGTGCATTTCTTCAAGGT 1944
Query 2066 GGATGTGGAGGAGAGCATGGCGTTGGCGAAAGCAGAGAGTATCAGGAAAGTTCCGACATT 2125
||| |||||||||||| |||| ||||||||| ||||||| |||| ||||||||| || ||
Sbjct 1945 GGACGTGGAGGAGAGCTTGGCATTGGCGAAATCAGAGAGCATCAAGAAAGTTCCAACCTT 2004
Query 2126 TAAGATGTACAAGAATGGAGATAAAGTGAAGGAGATGGTTTGTCCTAGCCATCAGTTTCT 2185
|||||| || ||||| ||||| ||||||||||| ||||| |||||||| |||||||| ||
Sbjct 2005 TAAGATCTATAAGAAGGGAGAGAAAGTGAAGGAAATGGTGTGTCCTAGTCATCAGTTACT 2064
Query 2186 AGAGGACTCTATAAAGCATTTCCTCTTAT 2214
||||||||| | | ||||||||||||||
Sbjct 2065 AGAGGACTCGGTCACGCATTTCCTCTTAT 2093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93206829515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5