BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42590.3
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483355 jgi|Araly1|483355|fgenesh2_kg.4__2415__AT2G42590.2 1432 0.0
> Ahg483355 jgi|Araly1|483355|fgenesh2_kg.4__2415__AT2G42590.2
Length=1152
Score = 1432 bits (775), Expect = 0.0
Identities = 913/977 (93%), Gaps = 19/977 (2%)
Strand=Plus/Plus
Query 19 AACCCGCGTTAATTACGCTTGTGTCCCTACGCGCGTCTCAAAGATCTCTCTCT-TCTCTG 77
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1 AACCCGCGTTAATTACGCTTGTGTCCCTACGCGCGTCTCAAAGATCTCTCTCTGTGTCTG 60
Query 78 GAGaaaaaataaaacaaaaGAACAGCGTTCGCCGAGAGATATACATACTCGGATCAGTCG 137
||| ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 61 GAG-AAAAA-AAAACAAAAGAAGAGCGTTCGTCGAGAGATATACATACTCGGATCAGTCG 118
Query 138 TCAAAAGCTTTGGAA--TTT-GATACTTTTGATTTTTCGAGAATCTTG-AAAATCAGTCA 193
|||||| | | || ||| || | ||||| | | | ||||||| |||||||||||
Sbjct 119 TCAAAA-C-TCAAAAGCTTTGGA-A--TTTGA---TACTA-AATCTTGAAAAATCAGTCA 169
Query 194 TGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTG 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 TGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTG 229
Query 254 AGCGTTATGAAGAAATGGTGGAATCAATGAAAAGTGTTGCGAAATTGAATGTTGATCTGA 313
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 230 AGCGCTATGAAGAAATGGTGGAATCAATGAAAAATGTTGCGAAATTGAATGTTGATCTGA 289
Query 314 CGGTGGAAGAGAGGAACTTACTCTCTGTGGGTTACAAGAACGTGATTGGTTCAAGGAGAG 373
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 290 CGGTGGAAGAGAGGAATTTGCTCTCTGTGGGATACAAGAACGTGATTGGTTCAAGGAGAG 349
Query 374 CTTCGTGGAGGATCTTCTCGTCGATTGAACA-AAAGGAAGCAGTGAAAGGGAATGATGTT 432
|||| |||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 350 CTTCCTGGAGGATATTCTCGTCGATCGAACAGAAAG-AAGCAGTGAAAGGGAATGATGTT 408
Query 433 AATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTAGAGCTTTCTAACATATGC 492
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 409 AATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTGGAGCTTTCAAACATATGC 468
Query 493 ATTGATATTATGTCTGTCTTAGATGAGCATCTCATTCCTTCGGCTTCCGAGGGTGAATCT 552
|||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 469 ATTGATATAATGTCTGTGTTAGATGAGCATCTGATTCCATCGGCTTCCGAGGGTGAATCA 528
Query 553 ACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCTGAGTTCAAATCA 612
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 529 ACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCGGAGTTCAAATCA 588
Query 613 GGGAACGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACT 672
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GGGAATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACT 648
Query 673 GCTGCTGAGGCTAAGCTCCCTCCAACACACCCTATCAGATTGGGTTTGGCTTTGAATTTC 732
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 649 GCTGCTGAGGCTAAACTCCCTCCTACACATCCTATCAGATTGGGTTTGGCTTTGAATTAC 708
Query 733 TCTGTCTTCTACTACGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCTAAGCAG 792
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 709 TCTGTCTTCTACTATGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCGAAGCAG 768
Query 793 GCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAACGAGGAATCCTACAAAGATAGC 852
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 769 GCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAATGAGGAATCCTACAAAGACAGC 828
Query 853 ACCTTAATAATGCAACTCCTTAGGGACAATCTGACCTTGTGGACTTCTGACATCTCAGAA 912
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 829 ACCTTAATTATGCAACTCCTCAGGGACAATCTGACCTTGTGGACTTCTGACATCCCAGAA 888
Query 913 GAAGGAGGAGACGATGCTCATAAGACGAATGGTTCTGCCAAACCTGGTGCTGGTGGAGAC 972
||||||| ||| ||||| |||||||| ||||||||| ||||| ||||||| ||||||||
Sbjct 889 GAAGGAGCAGATGATGCCCATAAGACAAATGGTTCTTCCAAAGCTGGTGCAGGTGGAGAT 948
Query 973 GATGCAGAGGTAA-GTA 988
||||| ||||||| |||
Sbjct 949 GATGCTGAGGTAAAGTA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5