BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42610.1
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935147 jgi|Araly1|935147|scaffold_403135.1 955 0.0
> Ahg935147 jgi|Araly1|935147|scaffold_403135.1
Length=576
Score = 955 bits (517), Expect = 0.0
Identities = 555/574 (97%), Gaps = 0/574 (0%)
Strand=Plus/Plus
Query 69 ACTCAACAAGAGATCATATCATGTCCTCTCCAAGAGAAAGAGGAAAGAGTTTGATGGAAT 128
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3 ACTCAACAAGAGATCATATCATGTCCTCTCCAAGAGAAAGAGGAAAGAATTTGATGGAAT 62
Query 129 CATCAGGATCAGAGCCACCGGTGACACCAAGCCGTTACGAGTCGCAGAAGAGACGTGACT 188
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 63 CATCAGGATCAGAACCACCGGTGACACCAAGCCGGTACGAGTCGCAGAAGAGACGCGACT 122
Query 189 GGAACACTTTCGGACAGTACTTGAAGAATCAGAGACCGCCTGTGCCGATGTCTCACTGCA 248
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 123 GGAACACTTTCGGACAGTACTTGAAGAATCAGAGACCGCCCGTGCCCATGTCTCACTGCA 182
Query 249 GCTGTAACCACGTGCTTGATTTCCTCAGGTACTTAGACCAGTTCGGTAAGACAAAGGTGC 308
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 183 GCTGCAACCACGTGCTTGATTTCCTCAGGTACTTAGACCAGTTCGGTAAGACAAAGGTTC 242
Query 309 ACGTGCCTGGCTGTATGTTCTACGGCCAGCCTGAGCCACCAGCTCCTTGCACGTGCCCTC 368
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 ACGTGCCTGGTTGTATGTTCTACGGCCAGCCTGAGCCACCAGCTCCTTGCACGTGCCCTC 302
Query 369 TCAGACAAGCTTGGGGAAGTCTTGACGCTTTGATCGGACGGCTGAGAGCGGCTTACGAGG 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TCAGACAAGCTTGGGGAAGTCTTGACGCTTTGATCGGACGGCTGAGAGCGGCTTACGAGG 362
Query 429 AGAACGGTGGACCTCCGGAGACTAACCCTTTCGCTAGCGGAGCGATAAGGGTTTATCTGA 488
||||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 363 AGAACGGTGGATCTCCGGAGACGAATCCTTTCGCTAGTGGAGCGATAAGGGTTTATCTGA 422
Query 489 GGGAGGTTAGGGAGTGTCAGGCTAAGGCTAGAGGGATTCCTTACaagaagaagaagaaga 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGGAGGTTAGGGAGTGTCAGGCTAAGGCTAGAGGGATTCCTTACAAGAAGAAGAAGAAGA 482
Query 549 agaagCCAACGCCGGAGATGGGAGGTGGGAGAGAGGACTCTTCTTCCTCCTCCTCTTCCT 608
||||||||||| |||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 483 AGAAGCCAACGACGGAGATGGGTGGTGGAAGAGACGACTCTTCTTCTTCCTCCTCTTCCT 542
Query 609 TCAGCTTCTCTTAAGAGATTCTCCATCGTCGTGA 642
||||||||||||||||||||||||||| ||||||
Sbjct 543 TCAGCTTCTCTTAAGAGATTCTCCATCTTCGTGA 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37131721158
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5