BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42640.1
Length=2600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935149 jgi|Araly1|935149|scaffold_403137.1 1443 0.0
Ahg938858 jgi|Araly1|938858|scaffold_503049.1 545 5e-154
> Ahg935149 jgi|Araly1|935149|scaffold_403137.1
Length=2266
Score = 1443 bits (781), Expect = 0.0
Identities = 982/1079 (91%), Gaps = 14/1079 (1%)
Strand=Plus/Plus
Query 1526 AATGATGCAGAGTGACCTCTTGAAAGAGCGAGGTGTTGATGATTCATCTCCTTACTCTCC 1585
|||||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1178 AATGATGCAGAGAGACTTCTTGAAAGAGCGAGGTGATGATGATTCATCTCCTTGCTCTCC 1237
Query 1586 AGATGAAAAGAATGTCTCTGGTTTCCAGCTTGATTCCCATGACCTAGTGTCTGGTGAATG 1645
|||| | |||| ||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 1238 AGAT-----G-ATGTGTCTAGTTTCCAGCTTGATTCCCATGACCAAGTGTCTGGTGAAAG 1291
Query 1646 TTCGACAGTATATCCGCGGAAGTCAATATCATTGCCGTCATCTCCGCGAAGCTATCAAAT 1705
|| ||| || ||| || |||| |||||||||| || |||||||| ||||||||||||||
Sbjct 1292 GTCAACACTAAATCGGCAGAAGGCAATATCATTTCCATCATCTCCCCGAAGCTATCAAAT 1351
Query 1706 TCAATTATCTGAAAGAAGTGAACATTCACCTCAAGAAATAAGCCACATTTGGAATGAAGT 1765
|||| ||||||||| ||||||| ||||| | || |||||||||| ||||||||||||||
Sbjct 1352 CCAATCATCTGAAAGGAGTGAACCTTCACGTAAAAAAATAAGCCAAATTTGGAATGAAGT 1411
Query 1766 GCTGGAGTCTCCAATGTTCCAGAATAAACCTTTGTTACCATTTGAAGAATGGAACATAGA 1825
|||||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||| |
Sbjct 1412 GCTGGAATCTCCAATGTTCCAGAATAATCCTTTGTTACCATATGAACAATGGAACATAAA 1471
Query 1826 TTTCTCCAAGTTGAAAGTTGGGGCTTCTGTTGGGAGTGGAACTTCTGGAGTAGTATGTCG 1885
||||||| | |||| ||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1472 TTTCTCCGATTTGACAGTTGGGGCTTTTGTTGGGAGTGGATCTTCTGGAGTAGTATGTCG 1531
Query 1886 TGGCGTCTGGAATAAAACTGAAGTTGCGATCAAGAT-ATTTCTTGGACAACAGCTTACAG 1944
|||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1532 TGGCATCTGGAATAAAACAGAAGTTGCGATCAAGATGCTTT-TTGGACAACAGCTTACAG 1590
Query 1945 CTGAGAACATGAAAGTTTTCTGCAATGAGATATCTATTCTTAGCCGTCTTCAACATCCCA 2004
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1591 CTGAGAACATGAAAGATTTCTGCAATGAGATATCTATTCTTAGCCGTCTTCGACATCCCA 1650
Query 2005 ATGTTATTCTGCTCCTTGGAGCATGCACAAAGCCTCCTCAGTTATCACTGGTCACAGAGT 2064
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1651 ATGTTATTCTGTTCCTTGGAGCATGCACAAAGCCTCCTCAGTTATCAATGATCACAGAGT 1710
Query 2065 ATATGAGTACGGGGTCCTTGTATGATGTGATCCGTACCAGAAAAAAGGAGTTGAGCTGGC 2124
|||||| || |||||||||||||||| | |||||||||||||||||| ||| ||||||
Sbjct 1711 ATATGAATAGGGGGTCCTTGTATGATATCCTCCGTACCAGAAAAAAGGGGTTAAGCTGGG 1770
Query 2125 AAAGGAAACTAAAGATTCT-GGCTGAAATTTGCAGGGGTTTGATGTACATACACAAGATG 2183
||||||||||||||||||| | ||| |||||||| ||||||||| ||| ||| |||||
Sbjct 1771 AAAGGAAACTAAAGATTCTAAG-TGACATTTGCAGAGGTTTGATGGGCATTCACCAGATG 1829
Query 2184 GGGATAGTCCACCGTGATCTAACCAGTGCGAACTGCCTGTTAAACAAGTCGATAGTCAAG 2243
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 1830 GGGATAGTCCACCGTGATCTAAAGAGTGCAAACTGCCTGTTAAACAAGGGGATAGTCAAG 1889
Query 2244 ATCTGTGATTTTGGGCTCTCGAGAAGGATGACA-GGTACGGCAGTGAAAGATACTGAAGC 2302
||||||||||||||||||||||||| ||||| | || ||| ||||| |||||||||||||
Sbjct 1890 ATCTGTGATTTTGGGCTCTCGAGAATGATGA-ATGGCACGACAGTGGAAGATACTGAAGC 1948
Query 2303 TGCAGGAACTCCTGAGTGGATGGCTCCTGAACTTATCCGCAATGAACCCGTCACAGAAAA 2362
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1949 TGCAGGAACTCCCGAGTGGATGGCTCCTGAACTTATCCGCAATGAACCAGTCACAGAAAA 2008
Query 2363 AAGCGACATCTTTAGCTTTGGTGTTATAATGTGGGAACTTAGCACTCTATCCAAGCCCTG 2422
| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2009 ATGTGACATCTTTAGCTTTGGTGTTATAATGTGGGAGCTTTGCACTCTATCCAAGCCCTG 2068
Query 2423 GAAAGGAGTCCCAAAAGAAAAAGTCATTCATATCGTTGCAAACGAAGGAGCCCGGCTCAA 2482
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2069 GAAAGGAGTCCCAAAAGAAAAAGTCATTCATATCGTTGCAAATGAAGGAGCCCGGCTCAC 2128
Query 2483 AATACCTGAAGGACCACTACAGA-AGCTTATTGCAGATTGTTGGTCGGAACCAGAGCAAA 2541
| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2129 ATTACCCGAAGGACCACTAC-GCCAGCTTATTGCAGATTGTTGGTCGGAACCAGAGCAAA 2187
Query 2542 GGCCGAGCTGTAAAGAGATACTGCACCGTCTTAAGACCTGCGAGATTCCGATTTGCTGA 2600
|||||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||
Sbjct 2188 GGCCGAGCTGTAAAGAGATAATGCACCGTCTCAAGACCTGCAAGTTTCCGATTTGCTGA 2246
Score = 1120 bits (606), Expect = 0.0
Identities = 845/957 (88%), Gaps = 29/957 (3%)
Strand=Plus/Plus
Query 498 GATGATGCTGGACCATCAGAACCAAATCCACCAAGTCCTACCTTGAGGCCTTCAGAAGTT 557
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 216 GATGATGCTGGACCATCAGAACCAAATCCACCAAGTCCTACCTCGAGGCCTTCACAAGTT 275
Query 558 GAGAAGATATACGTGCCTGTATGT-CAGG-G--A--TC----ACTAGCAGAA--A-CCTC 604
||| |||||| | | |||||||| || | | || |||| |||| | ||
Sbjct 276 GAGGAGATATCCAAGTCTGTATGTGTGGGAGAAACCTCTAATACTA-AAGAATCACCCAA 334
Query 605 TAATCTTGATCAAGATGGGGTGTCAAGTTATGAAGCATCGAATATTTTTTGGAGTACTGG 664
||||||| ||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 335 AAATCTTGTTCAAGATCGGCTGTCAAGTTATGAAGCATCGAATATTCTTTGGAGTACTGG 394
Query 665 GTCCTTATCAGACCCGATCCCAAGTGGTTTTTACACTGTGATCCCGGTTGAGAGATTG-A 723
|| ||| || ||||| ||||| |||||||||||| |||||||||||||||| |||||| |
Sbjct 395 GTTCTTTTCTGACCCAATCCCTAGTGGTTTTTACTCTGTGATCCCGGTTGATAGATTGCA 454
Query 724 TGCATTTTAAAAGCATTCCTACATTGGAAGAAATTAATGCGCTGGGGGAAGATCGTCTTA 783
|| ||||||||||||||||||| |||||| ||||||||| |||||| |||| ||| |||
Sbjct 455 -GCTTTTTAAAAGCATTCCTACAATGGAAGTAATTAATGCTCTGGGGAAAGAACGTTTTA 513
Query 784 AGGCTGATGCGATTTTTGTAGATCTTAAGAACGATATACAGCTTGTTTTGATAAAGGAGT 843
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 514 AGGCTGATGCGATTTGTGTAGATCTTAAGAACGATATACAGCTTGTTATGATAATGGAGT 573
Query 844 TTGTCATCAAACT-TGTCACAGGATTGGACTCCGATAAAGTTATTAAGAAAATTGCTGGA 902
|| |||||||| | ||||| |||| |||||| | ||||||| ||||||| ||||| |
Sbjct 574 TTTTCATCAAA-TCTGTCAAAGGAAAGGACTCAAAGGAAGTTATCAAGAAAACTGCTGTA 632
Query 903 CTGGTGGCAAATATATATAAAAGAAAAA---CTCTGCAGAGTCCGGCAAGAAC-GCTGCA 958
|||||||| || |||||| || ||||| |||||||||||||||||||||| | |||
Sbjct 633 ATGGTGGCAGATGTATATAGAATAAAAACTCCTCTGCAGAGTCCGGCAAGAACAG-TGCG 691
Query 959 AT-ATTTTGACGTTCAAGGGTTTACC-CTGCTAGGACAAATCAAGCATGGTTCTTGTCGT 1016
|| | ||| | |||| || ||| || ||||||||| ||||||| |||||||||||||||
Sbjct 692 ATCA-TTTCAAATTCATGGATTT-CCACTGCTAGGAAAAATCAAACATGGTTCTTGTCGT 749
Query 1017 GC-ACGAGCAATCCTCTTTAAAGTTCTAGCTGATGCTGTTGGTCTTGACAGTAAGCTTGT 1075
|| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 750 GCTA-GAGCAATCCTCTTTAAAGTTCTAGCTGATGCTGTTGGTCTTGAAAGTAAGCTTGT 808
Query 1076 AATGGGTTTCCCTACTGATCTGAGATTTTCTGCTAGCATCGACTCATATAATCATATCTC 1135
| |||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||
Sbjct 809 AGTGGGTTTCCCTAGTGATCTGAGATCTTCTGCTAGTGTCGACTCATGTAATCATATGTC 868
Query 1136 TGCTGTGGTTGAGCTCAATAATGTTGAAATGCTAGTCGACCTTAAGCGATGTCCTGGTCA 1195
|| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 869 TGTTGTGGTTGAGCACAATAATGTGGAAATGCTGGTCGACCTTAAGCGATGTCCTGGTCA 928
Query 1196 GCTTAAACCCTTCTCACCCAAGGCAGTTTATATGGCTCATATCTCAATGGCATGGCAGCC 1255
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 929 GCTTAAACCCTTCTCACCCAAGGCAGTTTATATGGCTCATATCTCAACGGCATGGCAGAC 988
Query 1256 TGATTTTGTAGACAATAACCCTTGTGCTTCACCATTGGAGCCAAACAGTCCCATGGAACG 1315
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 989 TGATTTTGTAGACAATGACTCTTGTGTTTCACCATTGGAGCCAAACAGTCCCATGGAACG 1048
Query 1316 GTCTGGTCCACCATCTGCATTACAATCCGGTTTAAGTCGTTCACTAGGCGAGCCAAACAT 1375
|||| |||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1049 GTCTTGTCCACCATCTGTATTACAATCCGGTTTAAGTCGTTCACTAAGCGCGCCAAACAT 1108
Query 1376 AGCTACTGAAGTTTTGCGGAGAAAGGTCATCAAGGAACCGCCACCTGCTGATTTCAG 1432
|||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1109 AGCTACTGAATTTTTTTGGAGAAAGGTCATCAAGGAACAGCCACCTGCTGATTTCAG 1165
Score = 195 bits (105), Expect = 2e-48
Identities = 130/142 (92%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 327 GCTGACCTAGAGGTCCAAGCTACTGACCTTAGGGAGATGACTGTGGTAGAGGCAAGAGAT 386
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 159 GCTGACCTAGAGGTCCAAGCTACTGACCTTAGGGAGGTGACTGTGGAAGAGACAAGAGAT 218
Query 387 GCTGCTGGACCATCAGAACCAAGA-CCTCCAAGTCCTACCTTGAGGCCTTCAGAAGTTGA 445
| |||||||||||||||||||| | || ||||||||||||| |||||||||| |||||||
Sbjct 219 GATGCTGGACCATCAGAACCAA-ATCCACCAAGTCCTACCTCGAGGCCTTCACAAGTTGA 277
Query 446 GGAGACATCCGAGCCTGTATGT 467
||||| |||| || ||||||||
Sbjct 278 GGAGATATCCAAGTCTGTATGT 299
> Ahg938858 jgi|Araly1|938858|scaffold_503049.1
Length=2471
Score = 545 bits (295), Expect = 5e-154
Identities = 731/936 (78%), Gaps = 52/936 (6%)
Strand=Plus/Plus
Query 1657 ATCCGCGGAAGTCAATATCATTGCCGTCATCTCCGC-GAAGCTATCAAATTCAATTATCT 1715
|||||| |||| |||| ||| | ||||| ||||| | ||| ||| | || ||| || |
Sbjct 1502 ATCCGCAGAAGGCAATCTCACTACCGTCTTCTCCCCAGAA-CTACCGAAGCCAA-TA--T 1557
Query 1716 GAA-AGAAGT-GAACATTCACCTCAAG-AA-ATAAGCCACATTTGGAATGAAGTGCT-GG 1770
||| || ||| || | |||| || | || |||||||| || ||| || |||| || ||
Sbjct 1558 GAACAG-AGTGGATC-GTCACATC--GTAATATAAGCCATATCTGGGATAAAGTTCTGGG 1613
Query 1771 AGTCTCCAATGTTCCAGAATAAACCTTTGTTACCATTTGAAGAATGGAACATAGATTTCT 1830
| ||||| |||||||||||||| || || ||||||| |||||||||||||||||| ||||
Sbjct 1614 A-TCTCCCATGTTCCAGAATAAGCCATTATTACCATATGAAGAATGGAACATAGACTTCT 1672
Query 1831 CCAAGTTGAAAGTTGGGGCTTC-TGTTGGGAGTGGAACTTCT-GGAGTAGTATGT-CGTG 1887
| |||||| |||||| | | ||| || | ||| | || | |||| ||||| | ||||
Sbjct 1673 CTGAGTTGACTGTTGGGAC-ACGTGTCGGAATTGG-ATTTTTCGGAGAAGTAT-TCCGTG 1729
Query 1888 GCG-TCTGGAATAAAACTGAAGTTGCGATC-AAGATATTTCTTGGA-CAACAGCTTACAG 1944
| | ||||||| || || ||||||||| ||| | || ||| || ||| | |||||||
Sbjct 1730 G-GATCTGGAACGGGACAGACGTTGCGATCAAAG-TGTTCCTT-GAGCAAGACCTTACAG 1786
Query 1945 CTGAGAACATGAAAGTTTTCTGCAATGAGATATCTATTCTTAGCCGTCTTCA-ACATCCC 2003
||||||||||| | | ||||||||||||||||| ||||||||||| ||| | |||||||
Sbjct 1787 CTGAGAACATGGAGGACTTCTGCAATGAGATATCAATTCTTAGCCGACTT-AGACATCCC 1845
Query 2004 AATGTTATTCTGCTCCTTGGAGCATGCACAAAGCCTCCTCAG-TTATCACTGGTCACAGA 2062
|||||||| ||| ||||||||||||||||||||||||| | | |||||| || |||| ||
Sbjct 1846 AATGTTATACTGTTCCTTGGAGCATGCACAAAGCCTCCAC-GATTATCATTGATCACTGA 1904
Query 2063 GTATAT-GAGTACGGGGTCCTTGTATGATGTGAT-C-CGT-A--CCAGAAAAAAGGA-GT 2115
||| || || | ||| || |||||| || || | | | | | | |||||| || ||
Sbjct 1905 GTACATGGA-AATGGGATCTTTGTATTATTTGCTCCACATGAGTGGACAAAAAAAGAGGT 1963
Query 2116 TGAGCTGGCAAAGGAAACTAAAGATTCTGGC-TGAAATTTGCAGGGGTTTGATGTACATA 2174
| ||||||| ||||| |||||||| || || ||| ||||||||||| ||||||| ||||
Sbjct 1964 TAAGCTGGCGGAGGAAGCTAAAGATGCT-GCGTGACATTTGCAGGGGCTTGATGTGCATA 2022
Query 2175 CACAAGATGGGGATAGTCCACCGTGATCTAACCAGTGCGAACTGCCTGTT-A--AACAAG 2231
||| |||||||||||| ||||||||| ||| || || ||||| || || | |||||
Sbjct 2023 CACCGGATGGGGATAGTACACCGTGATATAAAGAGCGCAAACTGTCTTTTGAGCAACAAA 2082
Query 2232 TCGATAGTCAAGATCTGTGATTTTGGGCTCTCGAGAAGGATGACAGGTACGGCAGTGAAA 2291
| || |||||||||||||||||||||||||||||||| |||||||| || || ||| |
Sbjct 2083 TGGACAGTCAAGATCTGTGATTTTGGGCTCTCGAGAATAATGACAGGCACAACAATGAGA 2142
Query 2292 GATACTGAAGCTGCAGGAACTCCTGAGTGGATGGCTCCTGAACTTATCCGCAATGAACCC 2351
|| || | | ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2143 GACACAGTCTCAGCAGGAACTCCAGAGTGGATGGCTCCTGAACTTATCCGCAATGAGCCC 2202
Query 2352 GTCACAGAAAAAAGCGACATCTTTAGCTTTGGTGTTATAATGTGGGAACT-TAGCACTCT 2410
|| ||||||| | || ||||| ||||| ||||| |||||||||||||| | ||||| |
Sbjct 2203 TTCTCAGAAAAGTGTGATATCTTCAGCTTAGGTGTAATAATGTGGGAACTCT-GCACTTT 2261
Query 2411 ATCCAAGCCCT-GGAAAGGAGTCCCAAAAGAAAAAGTCATTCATA-TCGTTGCAAACGAA 2468
| ||| | ||| || ||||||| || ||| || || || | |||| ||||
Sbjct 2262 AACCA-GACCTTGGGAAGGAGTACCGCCTGAACGGGTTGTTTATGCTA-TTGCTTACGAG 2319
Query 2469 GGAGCCCGGCTCAAAATACCTGAAGGACCACTACAGAA-GCTTATTGCAGATTGTTGGTC 2527
||||| ||||| | || ||||||||||| || ||| ||||||||||||||||||| |
Sbjct 2320 GGAGCTCGGCTTGAGATTCCTGAAGGACCGCTGG-GAAAGCTTATTGCAGATTGTTGGAC 2378
Query 2528 GGAACCAGAGCAAAGGCCGAGCTGTAAAGAGATACT 2563
||||| || ||||| ||||| || || ||||||||
Sbjct 2379 AGAACCGGAACAAAGACCGAGTTGCAATGAGATACT 2414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98044290630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5