BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42650.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935150 jgi|Araly1|935150|scaffold_403138.1 1670 0.0
> Ahg935150 jgi|Araly1|935150|scaffold_403138.1
Length=1160
Score = 1670 bits (904), Expect = 0.0
Identities = 1070/1151 (93%), Gaps = 8/1151 (1%)
Strand=Plus/Plus
Query 42 CCACCACTTATGTCAAGAGTAAGTCCCAAGACTGTGGACGATGCAGTTAAGGCTCTGGTC 101
||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 12 CCATCACTAATGTCAAGAGTAAGTCCCAAGACCGTGGACGATGCAGTTAAGGCTCTGGTC 71
Query 102 AAAGAGGGAAACGAAAAATCAAGGACGGAGAAGCCACAGCTTCTAGAAGAAGACGGATTC 161
|||||||||||| ||||||||| ||||||||||||||| |||||||| ||||| | ||||
Sbjct 72 AAAGAGGGAAACAAAAAATCAAAGACGGAGAAGCCACACCTTCTAGAGGAAGATGAATTC 131
Query 162 TTTTACCTAGTCGTAGCCCTAAAGAAGATTCCACAGAGGAATTTTACGAACGCTTATCGT 221
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 132 TTTTACCTAGTCGTAGCCCTAAAGAAGATTCCACAGAGGAATTTTACTAACGCTTATCGT 191
Query 222 ATTCCTCTCCCGCATCCGCTAATTAACACTACCGAAGACTCACCGGAGCTCTGTCTCATC 281
|||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |||
Sbjct 192 ATTCCTCTCCCGCATCCGCTTATTAGCACTACGGAAGACTCACCGGAGCTCTGTCTTATC 251
Query 282 ATCGACGACAGACCTGAAAGTGGTCTCACCGAGGAAGATGCGAAGAAGAATATCAAATCA 341
|||||||| ||| | ||||||||||||||| |||||||||||| |||||| |||||||||
Sbjct 252 ATCGACGATAGATCGGAAAGTGGTCTCACCAAGGAAGATGCGATGAAGAAGATCAAATCA 311
Query 342 GAGAACATACCAATCACGAAAGTTGTTAAGCTTTCGAAGCTGAAATCGGATTATGGATCA 401
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 312 GAGAACATACCAATCACTAAAGTTGTTAAGGTTTCGGAGCTGAAATCGGATTATGGATCA 371
Query 402 TTCGAATCGAAACGGAAGCTTTGTGATTCATACGATATGTTTTTCTCAGATCGGAGAGTG 461
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 372 TTCGAATCGAAACGGAAGCTTTGTGATTCATACGATATGTTTTTCTCTGATCGGAGAGTG 431
Query 462 ATTCCTATGTTGCCAAAATTGATTGGGAAGAAGTTCTTTC-AGAGCAAGAAGACTCCTGT 520
|||||| |||| || | ||||||||||||||| || |||| | || ||||||| ||||||
Sbjct 432 ATTCCTCTGTTACCGAGATTGATTGGGAAGAATTTTTTTCTA-AGGAAGAAGATTCCTGT 490
Query 521 GGCTATTGATTTGAAGCATATGAATTGGAAAGAGCAGATTGAGAAAGCTTGTGGTGCTGC 580
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 491 GGCGATTGATTTGAAGCATAGGAATTGGAAAGAGCAGATTGAGAAAGCTTGTGGTGCTGC 550
Query 581 TATGTTCTTCATGAGGACTGGGTCTTGTAGTGCGATCAAAGTTGCGAAATTGTCCATGGA 640
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 551 TATGTTCTTCATGAGGACTGGGACTTGTAGTGTGATCAAAGTTGCGAAATTGTCCATGGA 610
Query 641 AAGCGATGATATCGTTGAGAATGTGACGGCGACTTTGAATGGTGTTGTTGATGTTTTGCC 700
||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 611 AAGCGATGAAATCGCTGAGAATGTGATGGCGACTTTGAATGGAGTTGTTGATGTTTTGCC 670
Query 701 TAGTAGGTGGAAATACATAAGATCTTTGCATTTGAAGTTATCTGAGAGTTTATCTTTGCC 760
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 671 TAGTAAGTGGAAATACATAAGATCTTTGCATTTGAAGTTATCTGAGAGTTTAGCTTTGCC 730
Query 761 AT-TATATCAGACAGTGCCTTATTTGCAGCTCAAGATTGATCCTT-TAGGTGTTGAAGAA 818
| ||||||||||||| || |||||| |||||||||| ||||||| | ||||||||||||
Sbjct 731 -TCTATATCAGACAGTTCCATATTTGAAGCTCAAGATCGATCCTTCT-GGTGTTGAAGAA 788
Query 819 GTTAAGAATGGTGAAGGATTAGCTAAAAGTGATGTTGATGAT-AGTAGTAGTAAGAGTGT 877
|||| ||||||||||| ||||| ||||||||||| || |||| | |||||||||||||||
Sbjct 789 GTTAGGAATGGTGAAGAATTAGTTAAAAGTGATGATGTTGATGA-TAGTAGTAAGAGTGT 847
Query 878 GAAGACAAAGAAGAAGAATGGAAAGATTCATGAGGTTAGATATATGGATAGTAATGTATC 937
|||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 848 GAAGACAAAGAAGAAGAAAGGAAGGATTCATGAAGTTAGATATATGGATAGTAATGTATC 907
Query 938 TGAGACTCTTGGTGATGATGAATTCGATAGGAGTGTTGGAGAAGATGAGGTTGCTGATGA 997
||||||||||||||| ||| || |||| | || ||||| | ||||||||||| ||| |||
Sbjct 908 TGAGACTCTTGGTGAAGATAAAATCGAAAAGAATGTTGAACAAGATGAGGTTACTGGTGA 967
Query 998 TCTCAATGCTTCTGGAGATAAGAAGAAGAGGAAGAAGATGAGTAGTAGTAAGTCTGCAGT 1057
|||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TCTCAAAGGTTCAGGGGATAAGAAGAAGAGGAAGAAGATGAGTAGTAGTAAGTCTGCAGT 1027
Query 1058 GAGTGGGAAACCAGACATTGTGAAGAGTAAGAATGGGCAAAAGTCGAAAAAGCTAAAGAA 1117
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GAGTGAGAAACCAGACATTGTGAAGAGTAAGAATGGGCAAAAGTCGAAAAAGCTAAAGAA 1087
Query 1118 GGACATTGATGAGTCTGGTGGTGGATTCAAAGCTAAGACTAAGAGGAGGTGAACCAAGAA 1177
|||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1088 TGACATTGATGGGTCTGGTGGTGGATTGAAAGCAAAGACTAAGAGGAGGTGAACCAAGAA 1147
Query 1178 AAGAAGATTTT 1188
|||||||||||
Sbjct 1148 AAGAAGATTTT 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5