BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42660.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321945 jgi|Araly1|321945|fgenesh1_pm.C_scaffold_4002002 1229 0.0
> Ahg321945 jgi|Araly1|321945|fgenesh1_pm.C_scaffold_4002002
Length=807
Score = 1229 bits (665), Expect = 0.0
Identities = 741/777 (95%), Gaps = 8/777 (1%)
Strand=Plus/Plus
Query 33 ATGGCCGGGAGATCTTCGCCGGGAAAATGCTCCACGTGGCTTGACCTGAACAGAGAAGAA 92
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCCGGGACTTCTTCGCCGGGAAAATGCTCCATGTGGCTTGACCTGAACAGAGAAGAG 60
Query 93 ACAGTGGAGAAGAACAATGAAGAAGAGTCATCAGTGGAAGACGAAGACCAAATCACGA-- 150
|| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 61 ACGGTGGAGAAGAACAATGAAGAAGAGTCATCAGTTGAAGACGAAGAGCAAGTCACGAGT 120
Query 151 A-T---AACGTTAGACAGTATATTCGGTCCAACATGCCTCGGCTTCGTTGGACGCCTGAT 206
| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTAACAACGTTAGACAGTATGTTCGGTCCAACATGCCTCGGCTTCGTTGGACGCCTGAT 180
Query 207 CTTCATCTCTCCTTCGTTCGTGCTGTCCAACGACTAGGCGGTCCAGACAGAGCGACGCCG 266
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCATCTCTCCTTCGTTCGTGCAGTCCAACGACTAGGCGGTCCAGACAGAGCGACGCCG 240
Query 267 AAATTGGTTCTTGAGATGATGAATCTAAAAGGATTGAGTATTGCACATGTCAAGAGTCAT 326
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AAATTGGTTCTTGAGATGATGAATCTGAAAGGATTGAGTATTGCACATGTCAAGAGTCAT 300
Query 327 TTACAGATGTATCGAAGTAAGAAGCTCGAGCCGTCTTCTCGCCCTGGATTTGGAGCTTTC 386
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct 301 TTACAGATGTATCGAAGTAAGAAGCTCGAGCCATCATCTCGCCATGGATTTGGAGCTTTC 360
Query 387 ATGAGTGGACAAAGAAGCTATTTGATGGACATGATCGACTCTCGATGTATCCCTCATAGC 446
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 361 ATGAGTGGACAAAGAAGCTATTTGATTGACATGATCGACTCTCGATGTATCCCTTATGGC 420
Query 447 GATTTAAGACATGCCTATAACTCTAAAACCGTTCCTTCGAGGGTACTCAATCAAGACGCG 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATTTAAGACATGCCTATAACTCTAAAACCGTTCCTTCGAGGGTACTCAATCAAGACGCG 480
Query 507 GTCGTTACAAATCTTGGAGGTAACTTTCTTATGCGACCTTCGAGCTGGTTTAGCGGGTTA 566
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 GTCATTACAAATCTTGGAGGTAACTTTCTTACGCGACCTTCGAGCTGGTTTAGCGGGTTA 540
Query 567 TGCAGAAATGACCGAGACAGCACAGAGAACAAGACTCTGCCTCTACTCGAGATTAGGAAG 626
||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 TGCAGAAATGATCAAGATAGCACAGAGAACAAGACTCTGCCTCTGCTCGAGATTAGGAAG 600
Query 627 AAGAACAATGAGAAAAGAGTCCGAGATGAAGAAGTATCATCAGTCAAACGATTGAAATCA 686
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGATCAATGAGAAAAGAGTCCGAGATGAAGAAGTATCATCAGTCAAACGATTGAAATCA 660
Query 687 ATGTCCGGAGGTGGGATACAGTTGCCTGAGTTTGGAAATTGCAGGCAAAAACCAACAGAT 746
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGTCTGGAGGTGGGATACAGTTACCTGAGTTTGGAAATTGCAGGCAAAAACCAACAGAT 720
Query 747 GATATCAACACAATGCTCTCGCTCTCTCTGTTGTCGACATCATCAG-A-ACCGTAAC 801
|||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 721 GATATCAACACAATGCTCTCGCTCTCTCTGTTCTCGACATCATCAGGAGACCGTAAC 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5