BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42670.2 Length=1434 Score E Sequences producing significant alignments: (Bits) Value Ahg935152 jgi|Araly1|935152|scaffold_403140.1 1212 0.0 > Ahg935152 jgi|Araly1|935152|scaffold_403140.1 Length=768 Score = 1212 bits (656), Expect = 0.0 Identities = 726/760 (96%), Gaps = 4/760 (1%) Strand=Plus/Plus Query 458 TTTT-GAATTGGATTCAGATCATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAG 516 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTTTGGAATTGGATTCAGATCATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAG 60 Query 517 GCGTCTTTCTCTTCAGACGGACCAATAACAGAAGATGCTCTGGAGAAGGTTCGCAATGTC 576 ||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||| Sbjct 61 GCGTCTTTCTCTTCAGACGCACCAATATCAGACGAGGCTCTGGAGAAGGTTCGCAATGTC 120 Query 577 TTGGAGAAAATCAAGCCATCTGATGTTGGAATTGAGCAGGATGCTCAATTGGCACGGTCC 636 |||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||| || Sbjct 121 TTGGAGAAAATCAAGCCATCTGATGTTGGAATCGAACAGGAAGCTCAATTGGCTCGGACC 180 Query 637 AGGTCTGGTCCTCTCAATGAACGCAATGGAAGTAATCAGTCTCCCCCAGCAATAAAGTAT 696 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 181 AGGTCTGGTCCTCTCAATGAACGCAATGGAAGTCATCAGTCTCCCCCAGCAATAAAGTAT 240 Query 697 CTTCATTTGCATGAGTGTGACAGTTTCTCTATAGGAATCTTCTGTATGCCACCTTCTTCT 756 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 241 CTTCATTTGCATGAGTGTGACAGTTTCTCTATAGGAATTTTCTGTATGCCACCTTCCTCT 300 Query 757 ATGATACCTCTTCATAACCATCCGGGCATGACCGTGCTAAGCAAGCTCGTTTATGGTTCA 816 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 301 ATGATACCTCTTCATAACCATCCGGGCATGACCGTGCTAAGCAAGCTCATTTATGGTTCA 360 Query 817 ATGCATGTGAAGTCATATGATTGGCTAGAGCCTCAACTGACCGAACCAGAGGATCCATCA 876 ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 361 ATGCACGTGAAGTCATATGATTGGCTAGAGCCTGAACTGACCGAACCAGATGATCCATCA 420 Query 877 CAAGAAGCAAGACCTGCTAAACTGGTGAAGGATACTGAGATGACGGCTCAAAGCCCAGTA 936 | |||||||||| |||||||||||||||||||||||||||||||||| |||||||| | Sbjct 421 C---AAGCAAGACCCGCTAAACTGGTGAAGGATACTGAGATGACGGCTCCAAGCCCAGCA 477 Query 937 ACAACATTATATCCGAAAAGTGGTGGCAACATTCACTGTTTCAAAGCCATCACCCATTGT 996 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 478 ACAACATTATATCCGAAAAGTGGTGGCAACATTCATTGTTTCAAAGCCATCACCCATTGT 537 Query 997 GCTATTCTTGACATCTTAGCTCCACCTTACTCTTCAGAGCATGATCGGCATTGCACTTAC 1056 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GCTGTTCTTGACATCTTAGCTCCACCTTACTCTTCAGAGCATGATCGGCATTGCACTTAC 597 Query 1057 TTCCGGAAATCCAGAAGAGAAGACTTACCAGGTGAATTAGAAGTGGATGGAGAAGTGGTC 1116 |||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| Sbjct 598 TTCCGGAAATCCAGAAGAGAAGACTTACCAGGTGAAGTAGAAGTGAATGGGGAAGTGGTC 657 Query 1117 ACAGACGTGACATGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACGACGAATT 1176 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 658 ACAGACGTGACTTGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACGACGAGTT 717 Query 1177 CCGTACAGAGGTCCTGTCATTAGAACTTGATGATGATCTA 1216 || |||||||||||||| |||||||||||| ||| ||||| Sbjct 718 CCTTACAGAGGTCCTGTTATTAGAACTTGACGATAATCTA 757 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53631064960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5