BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42670.2
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935152 jgi|Araly1|935152|scaffold_403140.1 1212 0.0
> Ahg935152 jgi|Araly1|935152|scaffold_403140.1
Length=768
Score = 1212 bits (656), Expect = 0.0
Identities = 726/760 (96%), Gaps = 4/760 (1%)
Strand=Plus/Plus
Query 458 TTTT-GAATTGGATTCAGATCATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAG 516
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTGGAATTGGATTCAGATCATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAG 60
Query 517 GCGTCTTTCTCTTCAGACGGACCAATAACAGAAGATGCTCTGGAGAAGGTTCGCAATGTC 576
||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||
Sbjct 61 GCGTCTTTCTCTTCAGACGCACCAATATCAGACGAGGCTCTGGAGAAGGTTCGCAATGTC 120
Query 577 TTGGAGAAAATCAAGCCATCTGATGTTGGAATTGAGCAGGATGCTCAATTGGCACGGTCC 636
|||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||| ||
Sbjct 121 TTGGAGAAAATCAAGCCATCTGATGTTGGAATCGAACAGGAAGCTCAATTGGCTCGGACC 180
Query 637 AGGTCTGGTCCTCTCAATGAACGCAATGGAAGTAATCAGTCTCCCCCAGCAATAAAGTAT 696
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 AGGTCTGGTCCTCTCAATGAACGCAATGGAAGTCATCAGTCTCCCCCAGCAATAAAGTAT 240
Query 697 CTTCATTTGCATGAGTGTGACAGTTTCTCTATAGGAATCTTCTGTATGCCACCTTCTTCT 756
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 241 CTTCATTTGCATGAGTGTGACAGTTTCTCTATAGGAATTTTCTGTATGCCACCTTCCTCT 300
Query 757 ATGATACCTCTTCATAACCATCCGGGCATGACCGTGCTAAGCAAGCTCGTTTATGGTTCA 816
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 ATGATACCTCTTCATAACCATCCGGGCATGACCGTGCTAAGCAAGCTCATTTATGGTTCA 360
Query 817 ATGCATGTGAAGTCATATGATTGGCTAGAGCCTCAACTGACCGAACCAGAGGATCCATCA 876
||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 361 ATGCACGTGAAGTCATATGATTGGCTAGAGCCTGAACTGACCGAACCAGATGATCCATCA 420
Query 877 CAAGAAGCAAGACCTGCTAAACTGGTGAAGGATACTGAGATGACGGCTCAAAGCCCAGTA 936
| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 421 C---AAGCAAGACCCGCTAAACTGGTGAAGGATACTGAGATGACGGCTCCAAGCCCAGCA 477
Query 937 ACAACATTATATCCGAAAAGTGGTGGCAACATTCACTGTTTCAAAGCCATCACCCATTGT 996
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 ACAACATTATATCCGAAAAGTGGTGGCAACATTCATTGTTTCAAAGCCATCACCCATTGT 537
Query 997 GCTATTCTTGACATCTTAGCTCCACCTTACTCTTCAGAGCATGATCGGCATTGCACTTAC 1056
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCTGTTCTTGACATCTTAGCTCCACCTTACTCTTCAGAGCATGATCGGCATTGCACTTAC 597
Query 1057 TTCCGGAAATCCAGAAGAGAAGACTTACCAGGTGAATTAGAAGTGGATGGAGAAGTGGTC 1116
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct 598 TTCCGGAAATCCAGAAGAGAAGACTTACCAGGTGAAGTAGAAGTGAATGGGGAAGTGGTC 657
Query 1117 ACAGACGTGACATGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACGACGAATT 1176
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 ACAGACGTGACTTGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACGACGAGTT 717
Query 1177 CCGTACAGAGGTCCTGTCATTAGAACTTGATGATGATCTA 1216
|| |||||||||||||| |||||||||||| ||| |||||
Sbjct 718 CCTTACAGAGGTCCTGTTATTAGAACTTGACGATAATCTA 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53631064960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5