BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42680.1

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935153 jgi|Araly1|935153|scaffold_403141.1                        717    0.0  


> Ahg935153 jgi|Araly1|935153|scaffold_403141.1
Length=475

 Score =  717 bits (388),  Expect = 0.0
 Identities = 434/456 (95%), Gaps = 4/456 (1%)
 Strand=Plus/Plus

Query  65   AAACCATGGCCGGAATTGGACCGATAACTCAGGATTGGGAGCCGGTGGTGATCCGTAAGA  124
            |||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  22   AAACCATGGCAGGAGTTGGACCGATGACTCAAGATTGGGAGCCGGTGGTGATCCGTAAGA  81

Query  125  AA-CCCGCTAACGCCGCTGCCAAGCGCGACGAGAAAACTGTCAACGCCGCTCGTCGATCC  183
            || ||| |||||||||| |||||||| ||||| |||||||||||||||||||| ||| ||
Sbjct  82   AAGCCC-CTAACGCCGCCGCCAAGCGTGACGACAAAACTGTCAACGCCGCTCGCCGAGCC  140

Query  184  GGCGCCGATATCGAGACCGTCAGAAAATTCAATGCTGGAACCAACAAGGCGGCATCAAGC  243
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  141  GGCGCCGATATCGAGACCGTCAGAAAATTCAATGCTGGAACCAACAAGGCCGCATCAAGC  200

Query  244  GGCACATCTCTGAACACAAAAATGCTTGATGATGACACTGAGAACCTTACTCATGAACGT  303
            ||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||
Sbjct  201  GGCACATCTCTGAACACCAAAAGGCTTGACGATGACACTGAGAACCTTACTCATGAACGT  260

Query  304  GTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCAGGACAGACAAGAAGCTAACCCAG  363
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  261  GTGCCTACTGAGCTAAAGAAAGCCATTATGCAAGCCCGAACAGACAAGAAGCTAACCCAG  320

Query  364  TCCCAACTTGCTCAAATCATCAATGAGAAGCCACAAGTGATTCAAGAGTATGAGTCTGGC  423
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  TCCCAGCTTGCTCAAATCATCAATGAGAAGCCACAAGTGATTCAAGAGTATGAGTCTGGC  380

Query  424  AAAGCTATACCC-AACCAGCAAATCCTTTCTAAGCTGGAGAGAGCGCTTGGAGCTAAGCT  482
            ||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  381  AAAGCAAT-CCCGAACCAGCAAATCCTTTCTAAGCTGGAGAGAGCACTTGGAGCTAAGCT  439

Query  483  TCGTGGAAAGAAGTGAGCCAAGTTCTACTGATGTAG  518
            ||||||||||||||||||||||||||||||||||||
Sbjct  440  TCGTGGAAAGAAGTGAGCCAAGTTCTACTGATGTAG  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25809214809


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5