BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42690.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483364 jgi|Araly1|483364|fgenesh2_kg.4__2424__AT2G42690.1 2113 0.0
> Ahg483364 jgi|Araly1|483364|fgenesh2_kg.4__2424__AT2G42690.1
Length=1363
Score = 2113 bits (1144), Expect = 0.0
Identities = 1294/1367 (95%), Gaps = 8/1367 (1%)
Strand=Plus/Plus
Query 18 ACACACCATTTCTCTCTAATGGCTACAACAACCACATCATGGGAAGAACTCTTAGGCTCA 77
||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 1 ACACACCATTTCTCTCTAATGGCTACAAC-A--ACATCATGGGAAGAGCTCTTAGGCTCA 57
Query 78 AAGAATTGGGACACTATCTTAGACCCATTAGACCAATCACTTAGGGAACTCA-TCTTACG 136
||||||||||||||| || |||||||| |||||||||||||| | ||||||| || | ||
Sbjct 58 AAGAATTGGGACACTCTCCTAGACCCACTAGACCAATCACTTCGCGAACTCATTC-TCCG 116
Query 137 TTGTGGCGACTTTTGTCAAGCCACCTACGATGCCTTCGTCAACGACCAAAACTCCAAGTA 196
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 117 TTGTGGCGATTTTTGTCAAGCCACCTACGATGCTTTCGTCAACGACCAAAACTCCAAGTA 176
Query 197 CTGTGGAGCCAGCCGCTACGGCAAATCTTCTTTCTTCGACAAGGTCATGCTCGAAAACGC 256
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 177 CTGTGGAGCCAGCCGCTACGGCAAATCTTCCTTCTTCGACAAGGTCATGCTCGAATCCGC 236
Query 257 TTCCGACTACGAGGTTGTAAACTTCCTCTACGCCACAGCTCGTGTTTCTCTCCCCGAAGG 316
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 TTCTGACTACGAGGTTGCAAACTTCCTCTACGCCACAGCTCGTGTTTCTCTCCCCCAAGG 296
Query 317 TTTGCTTCTCCAATCACAATCAAGAGATTCTTGGGACCGTGAGTCTAACTGGTTTGGCTA 376
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 297 TTTGCTTCTCCAATCACAATCACGAGATTCTTGGGACCGTGAGTCTAATTGGTTTGGTTA 356
Query 377 CATTGCTGTCACGTCTGATGAACGGTCTAAGGCTTTAGGACGCCGTGAGATCTATATAGC 436
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 CATTGCTGTCACGTCTGATGAACGGACTAAGGCTTTAGGACGCCGTGAGATCTATATAGC 416
Query 437 TTTGAGAGGAACGAGCAGGAACTATGAGTGGGTCAATGTTTTGGGTGCTAGGCCAACTTC 496
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 TATGAGAGGAACGAGCAGGAACTATGAGTGGGTCAATGTTTTGGGTGCTAGGCCCACTTC 476
Query 497 AGCTGACCCCTTGCTGCACGGACCCGAGCAGGATGGTTCTGGTGGTGTAGTTGAAGGTAC 556
||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||
Sbjct 477 AGCTGACCCGTTGCTGCACGGACCAGAGCAGGATGGTTCTGCTGGTGTGGTTGAAGGTAC 536
Query 557 GACTTTTGATAGTGACAGTGAAGATGAAGAAGGGTGTAAGGTGATGCTCGGGTGGCTCAC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GACTTTTGATAGTGACAGTGAAGATGAAGAAGGGTGTAAGGTGATGCTCGGGTGGCTCAC 596
Query 617 AATCTATACTTCTAATCACCCCGAATCGAAATTCACTAAGCTGAGTCTACGGTCACAGTT 676
|||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 597 TATCTATACATCTAATCACCCTGAATCGAAATTCACCAAGCTGAGTCTACGGTCACAGTT 656
Query 677 GTTAGCCAAGATCAAGGAGCTTCTGTTGAAGTATAAGGACGAGAAACCGAGCATTGTGTT 736
|||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 657 GTTAGCTAAGATTAAGGAGCTTCTATTGAAGTATAAGGACGAGAAACCGAGTATTGTGTT 716
Query 737 GACTGGACATAGCTTGGGAGCTACAGAGGCTGTTCTGGCCGCCTATGATATAGCTGAGAA 796
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 GACTGGACACAGCTTGGGAGCTACAGAGGCTGTTCTCGCCGCCTATGATATAGCTGAGAA 776
Query 797 CGGTTCCAGTGATGATGTTCCGGTCACTGCTATAGTCTTTGGTTGTCCACAGGTAGGAAA 856
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 777 CGGTTCCAGTGATGATGTTCTGGTCACTGCTATAGTCTTTGGTTGTCCACAGGTAGGAAA 836
Query 857 CAAGGAGTTCAGAGACGAAGTAATGAGTCACAAGAACTTAAAGATCCTCCATGTAAGGAA 916
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 CAAGGAGTTCAGAGACGAAGTAATGCGTCACAAGAACTTAAAGATCCTCCATGTAAGGAA 896
Query 917 CACGATTGATCTCTTAACTCGATACCCAGGGGGACTTTTAGGGTATGTGGACATAGGAAT 976
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 897 CACAATTGATCTCTTAACTCGATATCCAGGGGGACTTTTAGGGTATGTGGACATGGGAAT 956
Query 977 AAACTTTGTGATCGATACAAAGAAGTCACCGTTCCTAAGCGATTCAAGGAATCCAGGGGA 1036
|||||||| ||| |||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 957 CAACTTTGTTATCAATACAAAGAAGTCACCGTTCCTAAAAGAATCAAGGAATCCGGGGGA 1016
Query 1037 TTGGCATAATCTTCAGGCGATGTTACATGTTGTAGCTGGATGGAATGGGAAGAAAGGAGA 1096
|||||||||||||||||| ||| | ||| |||| || ||||||||||||||||| |||||
Sbjct 1017 TTGGCATAATCTTCAGGCAATGCTCCATATTGTTGCGGGATGGAATGGGAAGAAGGGAGA 1076
Query 1097 GTTTAAACTGATGGTTAAGAGAAGTATTGCATTAGTGAACAAGTCATGCGAGTTCTTGAA 1156
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTTTAAACTGATGGTGAAGAGAAGTATTGCATTAGTGAACAAGTCATGCGAGTTCTTGAA 1136
Query 1157 AGCTGAGTGTTTGGTGCCAGGATCTTGGTGGGTAGAGAAGAACAAAGGACTGATCAAGAA 1216
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGATGAGTGTTTAGTGCCAGGATCTTGGTGGGTAGAGAAGAACAAAGGACTGATCAAGAA 1196
Query 1217 CGAAGATGGTGAATGGGTTCTTGCTCCCGTTGAAGAAGAACCTGTACCTGAATTCTAAAT 1276
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 CGAAGATGGTGAATGGGTTCTTGCTCCAGTTGAAGAAGAACCTGTACCTGAATTCTAAAC 1256
Query 1277 TGTATTTCTGTATTTTTC-T-CTAAGGTCATGATAAATCAACAATAAGCAGTTCAACTAT 1334
|||||||||||||| || | ||||| ||||| ||||||||||||||| ||||||||| |
Sbjct 1257 TGTATTTCTGTATTATTGGTTCTAAGTTCATGTTAAATCAACAATAAGAAGTTCAACTGT 1316
Query 1335 GTGATGAAAAGACCCAAGTTATT-ATATTGATATGAGTTTATGAGAT 1380
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1317 GTGATGAAAAGACCCAAGTTATTTATATTGATATGAGTTTATGAGAT 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5