BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42700.2
Length=2947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483365 jgi|Araly1|483365|fgenesh2_kg.4__2425__AT2G42700.1 3938 0.0
> Ahg483365 jgi|Araly1|483365|fgenesh2_kg.4__2425__AT2G42700.1
Length=2698
Score = 3938 bits (2132), Expect = 0.0
Identities = 2421/2556 (95%), Gaps = 37/2556 (1%)
Strand=Plus/Plus
Query 28 ATGTTCGTCGTCGGTGAGATTTCCCGGCGAAGCGAAAGCAGTGTTTCTCCGGTGGTTCAG 87
||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 1 ATGCTCGTCGTCGGTGAGATATCCCGGCGAAGCGAGATCAGTGTTTCTCCGGTGGTTCAA 60
Query 88 GCATCAGTCTGATTTCAGACAACACATCTCATAGTAATTTGATTCTAACTGGCGATTTCA 147
|||| ||||||| || ||||| |||||||| | | | | ||| | | || |
Sbjct 61 GCATTAGTCTGA-TTGAGACAGCACATCTC--A-T-A-GT-ATT-T---T---GA--T-- 102
Query 148 CTCTAGCTCGACCAATTGTATCCAATTCTCGTAGCTGAGAGCAATGGCTCTGATCGATGT 207
||||||| | | | || ||| ||||||||||||||||||||||||||||||
Sbjct 103 -TCTAGCT-G---GA--G-AT----TTC-AGTAGCTGAGAGCAATGGCTCTGATCGATGT 149
Query 208 CGCGATATCTTGTCTCAATTCGATCCGCGAAATAGAAGAGGATGTAAAAGATGCGATTGT 267
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 150 CGCGATATCTTGTCTCAATTCGATCCGCGAAATAGAAGAGGATGTTAAAGATGCCATTGT 209
Query 268 GTATATCGATGCTGGCTGCACAGAAAGTTTTCAATTTGTAGGAGCTTTCCCTTTGTTCTT 327
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 ATATATCGATGCTGGGTGCACAGAAAGTTTTCAATTTGTAGGAGCTTTCCCTTTGTTCTT 269
Query 328 GGAACTAGGTGCTCGAGCTGTCTGCAGTCTTGAAAACATGACTTCCTTAGATGCGGTGGC 387
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 270 GGAACTAGGTGCTCGAGCTGTCTGCAGTCTTGAAAATATGACTTCCCTAGACGCGGTGGC 329
Query 388 TGATTGGAATTCAAAGTCTGATTGTGCCAAGAGAATTGTGATTATGACATCTCGACTTCT 447
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 330 TGATTGGAATTCAAAGACTGATTGTGCCAAGAGAATTGTGATTATGACATCTCGGCTTCT 389
Query 448 CAATGATGCTCATCGGTATATGCTACGGTGTCTAAGCACCCATGAAGGTGTTCAGCGCTG 507
||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 390 CAATGATGCTCATCGATATATGCTACGGTGTCTAAGCACCCATGAAGGTGTTCAACACTG 449
Query 508 CACCGTATTCACATCTATTTCAGAGGGGTCTCACTCAGCTATCCCTGATTCACCTCTAGG 567
|||||||||||| |||||||| |||||||||||| |||| |||||||||| |||||| ||
Sbjct 450 CACCGTATTCACGTCTATTTCTGAGGGGTCTCACGCAGCCATCCCTGATTTACCTCTCGG 509
Query 568 TCCAGACGCGTATC-GAGAGTATGAAACCTTACTTGTTCAGGATTACAATGAACATACTA 626
|||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 510 TCCAGACGCGTA-CAGAGAGTACGAAACCTTACTTGTTCAGGATTACAATGAACATACTA 568
Query 627 AGAAAAGCGACAAAATATCTAAAGACAAAGGGGTTTCTAAGTTCTCTTCTGCACTTGAAT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AGAAAAGCGACAAAATATCTAAAGACAAAGGGGTTTCTAAGTTCTCTTCTGCACTTGAAT 628
Query 687 CCCTTACTATGGAGCCTATTGAAAGCGAAAATGTAGATATTTCATCAGGTGGTGCACAAG 746
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 629 CCCTGACTATGGAGCCTATTGCAAGCGAAAATGTAGATATTTCATCAGGTGGTGCAGAAG 688
Query 747 GTTTGGTTGTCTCAGTTCACCACTTCCCCTTGATTATTTGTCCTTTCACTCCTCGAGCGT 806
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GTTTGGTAGTCTCGGTGCACCACTTCCCCTTGATTATTTGTCCTTTCACTCCTCGAGCGT 748
Query 807 TTGTCTTACCTTCCCAAGGATCAGTCGCAGAAGCGTCCTTGTCCCGTCAACATGAGGATT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TTGTCTTACCTTCCCAAGGATCAGTCGCAGAAGCGTCCTTGTCCCGTCAACATGAGGATT 808
Query 867 CTCTTAGTTTTGGTTTGCCTCCCATAAGTACTGGATCTATGTCTGACACTGATGATGTTC 926
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 809 CTCTTAGTTTTGGTTTGCCTCCCATAAGTACTGGATCTATGTCTGATGCTGATGATGTTC 868
Query 927 CTCCTGGTGCAACTCTTACCGCACATTTTCTTTACCAGCTGGCCCTTAAGATGGAGTTGA 986
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CTTCGGGTGCAACTCTTACCGCACATTTTCTTTACCAGCTGGCCCTTAAGATGGAGTTGA 928
Query 987 AGTTGGAAATATTTTCACTTGGTGACCAATCGAAGAATGTTGGGAAGATTCTAACAGACA 1046
|||||||||| ||||||||||| |||| |||||||| ||||||||||||||| |||||||
Sbjct 929 AGTTGGAAATTTTTTCACTTGGCGACCTATCGAAGAGTGTTGGGAAGATTCTGACAGACA 988
Query 1047 TGTCAAGTGTTTATGATGTAGCGCGTCGTAAGCGATCTGCTGGCTTGTTACTTGTTGACC 1106
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 989 TGTCAAGTGTTTATGATGTAGGGCGTCGTAAGCGATCTGCCGGCTTGTTACTTGTTGACC 1048
Query 1107 GCACACTTGATCTTATCACTCCCTGCTGTCACGGGGATTCACTTTTCGATCGTATCTTTT 1166
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1049 GCACACTTGATCTTATCACTCCCTGCTGTCATGGGGATTCACTTTTCGATCGTATCTTTT 1108
Query 1167 CATCTTTGCCTCGGGCAGAAAGATTTTCTTCACAAGCACAGCTTAAACAAGGGGTCCCAA 1226
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CATCTTTGCCTAGGGCAGAAAGATTTTCTTCACAAGCACAGCTTAAACAAGGGGTCCCAA 1168
Query 1227 GCATCAATCGTCCTTCTCTTGATGTTCAAGTGCCGCTTGGGGAACTGCTTAATGAAGAAC 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 GCATCAATCGTCCTTCTCTTGATGTTCAAGTGCCGCTTGGGGAACTGCTTAATGAAGAAC 1228
Query 1287 CAAGCAAGATTCGGGATTCTGGTCTTCCTGAAGGAATTGAAGCTTTTTTACGTGGCTGGG 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 CAAGCAAGATTCGGGATTCTGGTCTTCCTGAAGGAATTGAAGCTTTTTTACGTGGCTGGG 1288
Query 1347 ATTCATATACCTCTGCTCCACAAAATGTAGGTTTGTTTAATGAATGTGACAAGAAATCTA 1406
||||||| || |||| ||| ||||||| |||| || ||||||||||| ||||||||||||
Sbjct 1289 ATTCATACACTTCTGATCCGCAAAATGGAGGTGTGCTTAATGAATGTAACAAGAAATCTA 1348
Query 1407 CCACCAACTGGACTGAACTACTAAATGGATCTCTTGTCGCTACTGAATGTTTTAGAGGAA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 CCACCAACTGGACTGAACTACTAAATGGATCTCTTGTCGCTACTGAATGTTTTAGAGGAA 1408
Query 1467 CACCTTACTTAGAGGCCATGATTGATAGGAAAACGAAGGATGGAAGTGTACTGGTGAAGA 1526
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1409 CACCTTACTTAGAGGCCATGATTGATAGGAAAACAAAGGATGGAAGTGTACTGGTGAAGA 1468
Query 1527 AATGGCTTCAAGAGGCT-TTGCGTCGCGAAAATATCTCTGTTAACGTGAGAGCTCGTCCT 1585
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1469 AATGGCTTCAAGAGGCTCTT-CGTCGCGAAAATATCTCTGTTAATGTGAGAGCTCGTCCT 1527
Query 1586 GGTTATGCTACAAAACCGGAGCTCCAGGCCATGATCAA-AGCATTGTCCCAAAGCCAGTC 1644
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1528 GGTTATGCTACAAAACCGGAGCTCCAAGCCATGAT-AAGAGCATTGTCCCAAAGCCAGTC 1586
Query 1645 GTCTTTGTTGAAAAATAAAGGGATTATTCAGTTAGGGGCAGCTACAGCCGCTGCTCTTGA 1704
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1587 ATCTTTGTTGAAAAACAAAGGGATTATTCAGTTAGCGGCAGCTACAGCCGCTGCTCTTGA 1646
Query 1705 TGAATCTCAAAGTGCCAAATGGGATACTTTTAGCAGTGCGGAGATGATGTTAAACGTAAG 1764
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1647 TGAATCTCAAAGTGCCAAATGGGATACTTTTAGCAGTGCAGAGATGATGTTAAACGTAAG 1706
Query 1765 TGCTGGTGATACGAGTCAGGGTTTGGCTGCTCAAATTAGTGACCTGATCAACAAAAGCGC 1824
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1707 TGCTGGTGATACGAGTCAGGGTTTGGCTGCTCAAATTAGTGACCTCATCAACAAAAGCGC 1766
Query 1825 TGTGGCAGAACTTCAAGCGAAGAAAAACGAGAAACCAGATTCCTCATCACGAGGGCTGCT 1884
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1767 TCTGGCAGAACTTCAAGCGAAGAAGAATGAGAAACCAGATTCCTCATCACGAGGGCTGCT 1826
Query 1885 ATCTTTTCGTGATGCCCTGCTTCTTACAATAGTTGGTTACATTCTTGCTGGCGAAAATTT 1944
|||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| |||||
Sbjct 1827 ATCTTTCCGTGACGCCCTACTCCTTACAATTGTTGGTTACATTCTTGCTGGCGAGAATTT 1886
Query 1945 CCCTACATCTGGCTCAGGTGGGCCTTTCTCTTGGCAAGAAGAGCATTTTCTAAAAGAAGC 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 CCCTACATCTGGCTCAGGTGGGCCTTTCTCTTGGCAAGAAGAGCATTTTCTAAAAGAAGC 1946
Query 2005 CATTGTCGATGCTGTTCTGGAGAATCCATCAGCAGGAAATCTCAAGTTTCTTAATGGGTT 2064
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1947 CATTGTCGATGCTGTTCTCGAGAATCCATCAGTAGGAAATCTCAAGTTTCTTAATGGGTT 2006
Query 2065 GACAGAAGAGCTTGAGGGCAGATTGAATCGTCTCAAGTCTGAGGAAACCAAAGAAATTCC 2124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2007 GACAGAAGAGCTTGAGGGCAGATTGAATCGTCTCAAGTCCGAGGAAACCAAAGAAATTCC 2066
Query 2125 CTCTGATGATCAATTAGACATTGATGCTCTTGATGATGATCCATGGGGGAAATGGGGTGA 2184
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067 ATCTGAAGATCAATTAGACATTGATGCTCTTGATGATGATCCATGGGGGAAATGGGGTGA 2126
Query 2185 CGAGGAAGAAGAAGAAGTTGACAATAGTAAAGCAGACGAGTCCTATGACGATATGCAGCT 2244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2127 CGAGGAAGAAGAAGAAGTTGACAATAGTAAAGCAGACGAATCCTATGACGATATGCAGCT 2186
Query 2245 GAAACTGGATTTGCGTGATAGAGTAGACAGCTTATTTAGGTTCCTCCACAAGTTATCGAG 2304
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2187 GAAACTGGATTTGCGTGATAGAGTAGACAGCTTGTTTAGGTTTCTCCACAAGTTATCGAG 2246
Query 2305 TCTAAGAACAAGGAATCTACCATTAAGAGAAGGCTCATTGGCTTCAGAGAGCAGCTTTCC 2364
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 2247 TCTAAGAACAAGGAATCTACCATTAAAAGAAGGATCTTTGGCTTCAGAGAGCAGCTTTCC 2306
Query 2365 TGGCGAGCCTTCTGGAAACAAAGGGCTAGTCTACAGGCTTATAACAAAAGTGTTGAGCAA 2424
||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2307 CGGCGATCCTTCTGGAAACAAAGGGCTACTCAACAGGCTTATAACAAAAGTGTTGAGCAA 2366
Query 2425 ACAAGAGATACCCGGTTTAGAATACCATTCTTCAACTGTTGGAAGATTTATTAAAAGCGG 2484
||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 2367 ACAAGAGATACCCGGTTTAGAATACCATTCTTCTACTGTCGGCAGGTTTATTAAAAGCGG 2426
Query 2485 ATTTGGAAGGTTTGGTCTTGGTCAGGCAAAACCAAGCCTGGCAGACCAGAGTGTCATTCT 2544
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2427 GTTTGGAAGGTTTGGTCTTGGTCAGGCAAGACCAAGCCTGGCAGACCAGAGTGTCATTCT 2486
Query 2545 TGTCTTTGTCATTGGAGGTATCAACGGTATAGAGGT 2580
|||||||||||||||||||||||| ||| ||||||
Sbjct 2487 TGTCTTTGTCATTGGAGGTATCAATGGTCGAGAGGT 2522
Score = 272 bits (147), Expect = 1e-71
Identities = 171/182 (94%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 2664 AGGTTTTGGAAGCTCAAGAGGCTGTGTCAGAGAGCGGAAGACCAGACATTAACTTGGTTA 2723
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2519 AGGTTTTGGAAGCTCAAGAGGCTGTGTCAGAGAGCGGAAGACCGGACATTAACTTGGTTA 2578
Query 2724 TTGGAGGAACGACACTTCTAACCCCCGACGACATGTTTGAGTTATTGTTGGGACAATTCA 2783
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 2579 TCGGAGGAACGACACTTCTAACTCCCGACGACATGTTCGAGTTATTGTTGGGACAGTTCA 2638
Query 2784 GCCATTTTTGATATCTTGC--AAACTGACCTCACTCTCATAATCTCTGTTGTTAGCTTGT 2841
|||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 2639 GCCATTTTTGATCTCTTCCTGAAA--GACCTCACTCTCATAATCTCTGTTGTTAGCTTGT 2696
Query 2842 AA 2843
||
Sbjct 2697 AA 2698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111261605645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5