BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42710.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483366 jgi|Araly1|483366|fgenesh2_kg.4__2426__AT2G42710.1 2135 0.0
> Ahg483366 jgi|Araly1|483366|fgenesh2_kg.4__2426__AT2G42710.1
Length=1459
Score = 2135 bits (1156), Expect = 0.0
Identities = 1260/1311 (96%), Gaps = 4/1311 (0%)
Strand=Plus/Plus
Query 196 CCGATTCAAACGAATCTCGCAAAAAGGCTGTTACAATCGAGCCAGTATCGTACGCGGCCA 255
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 150 CCGATTCAAACGAATCTCGCAAAAAGCCTGTTACAATCGAGCCAGTATCGTACGCCGCCA 209
Query 256 AACCCAAGGATCAGAAATCTGAACCGAAAAATGTTGAATCGACGGAGAACCTTCAGTCTC 315
|||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 210 AACCCAAGGATCCGAAATCTGAACCTACAAATGTTGAATCGACGGAGAACCTTCAGTCTC 269
Query 316 CAGAATCAGCGAACTGGACTCGTGAAGAAATCCGATATGTGAAAGACTCTCCTTCGATCA 375
| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 270 CGGAATCATCGAACTGGACTCGTGAAGAAATCCGATATGTGAAAGATTCTCCTTCGATCA 329
Query 376 ATCCGGTTTCTTACGCTCAGCGTGTGGCTCCACTTCCGGAGGATCGTGTCGCCGGTgaga 435
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 330 ATCCGGTTTCTTACGCTCAGCGTGTGGCTCCGCTTCCGGAGGATCGCGTCGCCGGTGAGA 389
Query 436 atgaaggagatagaactccagaggagatggagagggagaggaagaggattgaattagaga 495
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 390 ATGAAGGAGAGAGAACTCCGGAGGAGATGGAGAGGGAAAGGAAGAGGATTGAATTAGAGA 449
Query 496 aTCGAGCTAGAAGAAGGTTTTTAAGAGCTAATGCTGTTGAAGAAGATACTTCTTCACTTC 555
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 450 ATCGAGCTAGAAGAAGGTTCTTAAGAGCTAATGCTGTTGAAGAAGATACTTCTTCACTTC 509
Query 556 CTTTGCCAACTTTGCTTAAACCAGAGTTGAAGCATGGAAAGAAACCTATTTTCGATCTCA 615
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 510 CTTTGCCAACTTTGCTTAAACCAGAGCTGAAGCATGGAAAGAAACCTATTTTCGATCTCA 569
Query 616 TGGAGGCCATTAGAGAGATTAAGGGCAATGCCAAGGCGAAATTTGATGAAACTCTTGAGG 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TGGAGGCCATTAGAGAGATTAAGGGCAATGCCAAGGCGAAATTTGATGAAACTCTTGAGG 629
Query 676 CGCATGTGAGATTGGGCATTGAAAAAGGAAGATCTGAGCTGATAGTTCGTGGTACTTTGG 735
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 CACATGTGAGATTGGGCATTGAAAAAGGAAGATCTGAGCTGATAGTTCGTGGTACTTTGG 689
Query 736 CTCTACCCCACTCTGTTAAGAAGGATGTGAAAGTGGCTTTCTTTGCCGAGGGAGCTGATG 795
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 690 CTCTACCCCACTCTGTTAAAAAGGATGTGAAAGTGGCTTTCTTTGCTGAGGGAGCTGATG 749
Query 796 CAGAGGATGCAAAAGCTGCAGGAGCTGATGTCGTTGGTGGTCTTGAGCTTATTGAAGAGA 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 750 CAGAGGATGCAAAAGCTGCAGGAGCTGATGTCGTTGGTGGTCTTGAGCTTATTGAAGAAA 809
Query 856 TCTTGAAAAGTGGCAAGATTGACTTTGATAGATGTCTTGCAACTCCAAAAATGATGCCCC 915
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TCTTGAAAAGCGGCAAGATCGACTTTGATAGATGTCTTGCAACTCCAAAAATGATGCCCC 869
Query 916 GTGTTTACAAGATATCAAGAATTCTTAACAATCATGGTTTGATGCCAAACCCCAAACAAG 975
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 870 GTGTTTACAAGATATCAAGGATTCTTAACAATCACGGTTTGATGCCAAACCCCAAACAAG 929
Query 976 GTAGTGTGACCAAGGATGTTACGAAAGCAGTCAAAGACGCAAAAGCTGGACATACCAAAT 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GTAGTGTGACCAAGGATGTTACGAAAGCAGTCAAAGACGCAAAAGCTGGACATACCAAAT 989
Query 1036 TTAGAATGGATAAAACGTCTATTCTTCATGTGCCACTTGGAAAGATGAGCTTTTCTGAAG 1095
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 990 TCAGAATGGATAAAACGTCTATTCTTCATGTGCCACTTGGAAAGATGAGCTTTCCTGAAG 1049
Query 1096 AGGCTTTACGAGAGAATGTTGGTGCGTTTATGAACGCCCTTTTGCTAGCGAAGCCTGCTG 1155
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1050 AGGCTTTACGAGAGAATGTTGGTGCGTTTATGAACGCCCTTTTGCTAGCAAAGCCTGCCG 1109
Query 1156 GATTGAAAAAGACTTCAAAATATGCTGGTTATGTGAATGCATTCCACTTATGCAGTACGA 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GATTGAAAAAGACTTCAAAATATGCTGGTTATGTGAATGCATTCCACTTATGCAGTACGA 1169
Query 1216 TGGGAAAGGGTTATCCAGTATCGATACAGTCGTTATCCAGAGCAGCGGACCTCCATACCA 1275
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1170 TGGGAAAGGGTTATCCGGTATCGATACAGTCGTTATCTAGAGCAGCGGATCTCCATACCA 1229
Query 1276 AATTGCAGCTCAAGTGAGCTAGTGGAGTCCAAAAGATTAA---TCTTAATCATCCCGTAA 1332
|||| |||||||||||||||||| || |||||||||| || ||||||| |||||| ||
Sbjct 1230 AATTACAGCTCAAGTGAGCTAGTAGACTCCAAAAGATAAAAAATCTTAATTATCCCGGAA 1289
Query 1333 AAGttttttttACTGTTTTCCAAATGCTGAATCTTTGAAAACATTATGATTTGTTGTCTC 1392
| ||| || |||||||| |||||||||||||||||||| ||||||||| |||||||||
Sbjct 1290 AGGTTGATTAAACTGTTTTTCAAATGCTGAATCTTTGAAA-CATTATGATATGTTGTCTC 1348
Query 1393 TTAGGTAGTCTATTGCTCAATTGATCGAATTGGCTTCTGTCCTTTTCTCCTTTGTTTTTG 1452
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1349 TTAGGTAGTCTATTGCTCAATTGATCGAATTGGCTTCAGTCTTTTTCTCCTTTGTTTTTG 1408
Query 1453 TTGTTTGAGAGCTTATCATCCACTTTCCATAGAGGCCCTTCACTTGAATAA 1503
||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1409 TTGTTTGAGAGCTTATCATCCACTTCCCATAAAGGCCCTTCACTTGAATAA 1459
Score = 220 bits (119), Expect = 2e-56
Identities = 141/151 (93%), Gaps = 4/151 (3%)
Strand=Plus/Plus
Query 1 AAAATCACATTTCACACGAAAAACCTCGAGTGAGTGAAGAAACAATGGCAGCTATGAAGC 60
|||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||
Sbjct 1 AAAATCACATTTCACACGGAAAACCTC-A--GAGTGAA-CAACAATGGCAGCTATGAAGC 56
Query 61 TCCTACTCTCTCAAGCTCGCCGCCAAGGTCTAATCAAACCCTTTTCGTCTCCATTTCAAC 120
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 57 TTCTACTCTCTCAAGCTCGCCGCCAAGGTCTAATCAAACCCTTTTCATCTCCATTTCAAC 116
Query 121 AAATCCCAAGACtcttctcttcatcttcatc 151
||||||| |||||||||||||| ||||||||
Sbjct 117 AAATCCCTAGACTCTTCTCTTCCTCTTCATC 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5