BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42730.1
Length=2407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902275 jgi|Araly1|902275|Al_scaffold_0004_2925 1009 0.0
Ahg483368 jgi|Araly1|483368|fgenesh2_kg.4__2428__AT5G42325.1 623 2e-177
Ahg346083 jgi|Araly1|346083|fgenesh1_pg.C_scaffold_4002425 75.0 2e-12
> Ahg902275 jgi|Araly1|902275|Al_scaffold_0004_2925
Length=663
Score = 1009 bits (546), Expect = 0.0
Identities = 621/658 (94%), Gaps = 2/658 (0%)
Strand=Plus/Plus
Query 365 ACTAAGCAAAACCGGATTGAGATTCA-CAGAAATTACATGGCTTTCGTTGACAAATTGCT 423
|||||||||||||||| ||||||||| || ||||| |||||||||||| |||||||||||
Sbjct 1 ACTAAGCAAAACCGGAGTGAGATTCACCA-AAATTTCATGGCTTTCGTCGACAAATTGCT 59
Query 424 AGATACGCAACGTGGTTCTTCTATAAAGAAGCTCACTCTAAAGAGTCATGTTGGTGTTCG 483
|||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 AGATCCGCAACGCGGTTCTTCTATAAAGAAGCTCACTCTAAAGAGTCATGTCGGTGTTCG 119
Query 484 AGGTGGCACTGATTCATCTCGCATTCAAAGTTGGATTTGCAACGTTCTTGACCATGGTGT 543
|||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 AGGTGGCACTGACTCATCCCGCATTCAAACTTGGATTTGCAACGTTCTTGACCATGGTGT 179
Query 544 TATGGATCTTGATGTGTTCATTACTTTAAAAGGAAAATCTCCACCAGTGCCTGCAATGAT 603
| ||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 180 TGTGGATCTTGATATGTTCATCACTTTAAAAGGAAAATCTCCACCAGTGCCTTCGTTGAT 239
Query 604 CTTTAAGAGCAAGACATTGGTTAAGCTGAGAGTAGGACGTGGTTTTACAATCAAGCTTTC 663
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 240 CTTCAAGAGCAAGACATTGGTTAAGCTGAGACTAGGACGTGGTTTTACAATCAAGCCTTC 299
Query 664 TCAAGATGTTTCTCTTCCTTTGCTTAGGACATTATGTCTTGACTCAGTTAATTTTGTTGG 723
||| ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 300 TCAGGATGTTTCTCTTCCTATGCTTAGGACATTATTTCTTGACTCGGTTAATTTTGTTGG 359
Query 724 AGGTCATAATGTTGTTGGAACTCTTATATCTCGCTGTCCTGTTCTCGAAGAACTGGTTGT 783
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 360 AGGTCATAATGTTGTTGGAACTCTTATATCTCGTTGTCCTGTTCTCGAAGAATTGGTTGT 419
Query 784 TGAGGAGCGGCGATGTGTAGATTGGACTTGTTCCGTGTCTTCTCCATCTCTAAAGAGACT 843
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 420 TGAGGAGCGGCGATGTGTAGATTGGACTTGTTCTGTGTCTTCTACATCTCTAAAGAGACT 479
Query 844 ACACATCCGATTTGATCGCAAGTTTACTAGTATTTCATTAGATGCTCCTAATCTTATCTA 903
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 480 ACACATCCGATTTGATCGCAAGTTTACAAGTATTTCATTAGATGCTCCTAATCTTGTCTA 539
Query 904 CTACAAACACTCTGGTTATGTTTTGGGTAAGTATCCTAATGTTAAGTTGGATTCCCTCAT 963
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CTATAAACATTCTGGTTATGTTTTGGGTAAGTATCCAAATGTTAAGTTGGATTCCCTCAT 599
Query 964 CGAAGCTAGACTCAATCTTCGGATGGATGAAACAAGAATGGTGGGAGTAAGAAATGGA 1021
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 600 CGAAGCTAGACTCAATCTTCGGATGGATGAAAGAAGAATGCAGGGAGTTAGAAATGGA 657
> Ahg483368 jgi|Araly1|483368|fgenesh2_kg.4__2428__AT5G42325.1
Length=678
Score = 623 bits (337), Expect = 2e-177
Identities = 440/490 (90%), Gaps = 6/490 (1%)
Strand=Plus/Plus
Query 1664 ATGCAGAAGCAGGAGTTCTTGGAGTTGTACGAGGCAGCACTTCGAGCGGCTAAGTCTGTG 1723
||||| || || |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 ATGCAAAAACAAGAGTTCTTGGAGTTGTTCGATGCAGCACTTCGAGCGGCTAAGTCTGTG 60
Query 1724 AAAGGTGTTAAGAATTCGTCAA-AGGTTTCGAGGTTTGTGGACGCTA-GAAATCGTTTGA 1781
||||||||||||||||| || | |||| ||||||||||| ||||| | ||| ||||||||
Sbjct 61 AAAGGTGTTAAGAATTC-TCCAGAGGTATCGAGGTTTGTTGACGCCATGAA-TCGTTTGA 118
Query 1782 AGGACGCTCCT-ACATCACTTGCTTGTGAGGTGGTCTCCAAAACCTCCATGGGGAAGGGT 1840
|||| |||||| | |||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 119 AGGAAGCTCCTGAG-TCACTTGCTTGTGACGTGGTCTGCACAACCTCCATGGGGAAGGGT 177
Query 1841 TTGAGTTTCTTGAACGATCACAAAAACCCTCATATTCGATCGGAAGGAAGGCTTCTTCGG 1900
||||| ||||| || ||||||||||||||||| |||||||| ||||||| ||||||| ||
Sbjct 178 TTGAGATTCTTCAAAGATCACAAAAACCCTCAAATTCGATCAGAAGGAAAGCTTCTTTGG 237
Query 1901 GATCTTTGGATGAAGATTCTTTACGCTTCAGGTAGAGAAAAGAGCCACGATAGAGAAACT 1960
|||||||||| |||||| || |||||||||||||||||||||||| |||||||| |||
Sbjct 238 GATCTTTGGACAAAGATTATTCACGCTTCAGGTAGAGAAAAGAGCCGTGATAGAGATACT 297
Query 1961 CAGGTGAAGATTCCGACGCATTCAACGATGAAGAAGACTGGAGATTCGAAACGAGACAAA 2020
| |||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||||
Sbjct 298 CCGGTGAAGATTCCGACGGATTCAACAATAAAGAAGACTGGAGATTCAAAACGAGACAAA 357
Query 2021 GTGCGTGAGATTCTTCAAACATCTCTGGTTAAAGTCGCTTCTGAGATTGTTGACACAGAG 2080
|||||||||||||| ||||||||| ||| |||||| ||| ||||| ||||||||||||||
Sbjct 358 GTGCGTGAGATTCTACAAACATCTTTGGCTAAAGTTGCTACTGAGGTTGTTGACACAGAG 417
Query 2081 ATGAAGACACGAGTCACTGCTTGTGATCCTTCTGTCGTGGCTGTTTCAGTGGAATCTGCA 2140
||||||||||||||||||||||||||||||| || |||||| | |||||||||||||||
Sbjct 418 ATGAAGACACGAGTCACTGCTTGTGATCCTTGGGTTGTGGCTATATCAGTGGAATCTGCA 477
Query 2141 ATGTTTGAGA 2150
||||||||||
Sbjct 478 ATGTTTGAGA 487
Score = 305 bits (165), Expect = 8e-82
Identities = 183/192 (95%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 2216 AGTAACAATCCGGATTTGAGGAGGAAAGTGTTAATCGGTGAGATCAATGGGGAGAGACTC 2275
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 487 AGTAACAATCCAGATTTGAGGAGGAAAGTGTTAATTGGTGAGATCAATGGAGAGAGACTC 546
Query 2276 GTGACAATGGAGAGACAAGAGATGGGGAGTGAGAAGATTCAGAAGGAGGTTCAAAGGATT 2335
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 547 GTGACAATGGAGAGACAAGAGATGGGGAGTGAGAAGATTCAGAAGGAAGTTCAAAGGATT 606
Query 2336 AAAGAGAATGCAAGGTTTAAGGAAGAGAGTCGAATGAAGATTCTTCAATCAGCATCTATG 2395
|||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 607 AAAGAGAATGCAAGATTTAAGGAAGAGAGTCGAATGAAGATGCTTCAGTCAGCAGATATG 666
Query 2396 ATCATGACTTAG 2407
||||||||||||
Sbjct 667 ATCATGACTTAG 678
> Ahg346083 jgi|Araly1|346083|fgenesh1_pg.C_scaffold_4002425
Length=312
Score = 75.0 bits (40), Expect = 2e-12
Identities = 50/55 (91%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1664 ATGCAGAAGCAGGAGTTCTTGGAGTTGTACGAGGCAGCACTTCGAGCGGCTAAGT 1718
|||||||||||||||||||||||||||| | |||| |||| |||||||||||||
Sbjct 1 ATGCAGAAGCAGGAGTTCTTGGAGTTGTTCAAGGCTGCACAACGAGCGGCTAAGT 55
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90692873345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5