BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42740.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483371 jgi|Araly1|483371|fgenesh2_kg.4__2431__AT2G42740.1 1059 0.0
Ahg486323 jgi|Araly1|486323|fgenesh2_kg.5__2315__AT3G58700.1 787 0.0
> Ahg483371 jgi|Araly1|483371|fgenesh2_kg.4__2431__AT2G42740.1
Length=660
Score = 1059 bits (573), Expect = 0.0
Identities = 632/661 (96%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 13 CTCCGTCTCTCCTTTCCCGTCGGCCGGTGATAATTTCGCAACCCAAATTCCAAATGGCGT 72
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1 CTCCGTCTCTCCTTTCCCGTCGGCCGGTGATAAATTCGCAACCCAAATCCCTAATGGCGT 60
Query 73 CGGAGAAGAAGCTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACA 132
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 61 CGGAGAAGAAGCTATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTGGTGCTCAACA 120
Query 133 TCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTTTTGGAACAATTGA 192
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 TCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCTTCCAAGGTTTTGGAACAATTGA 180
Query 193 GTGGTCAGACTCCTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTATCAGAC 252
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 GTGGTCAGGCTCCTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTACCAGAC 240
Query 253 GTAACGAGAAGATCGCATGCTATGTAACCGTCAGAGGTGAGAAGGCAATGCAACTACTTG 312
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 241 GTAACGAGAAGATCGCATGCTATGTTACTGTCAGAGGTGAGAAGGCAATGCAACTACTTG 300
Query 313 AAAGTGGATTGAAAGTCAAGGAATACGAACTTCTCAGAAGAAACTTCAGTGACACTGGTT 372
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 AAAGTGGATTGAAAGTTAAGGAATACGTACTTCTCAGAAGAAACTTCAGTGACACTGGTT 360
Query 373 GCTTCGGTTTTGGTATTCAAGAACACATTGATTTGGGTATCAAGTACGATCCATCAACTG 432
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 CCTTCGGTTTTGGTATTCAAGAACACATTGATTTGGGTATCAAGTATGATCCATCAACTG 420
Query 433 GAATCTATGGTATGGACTTCTATGTGGTCCTAGAACGTCCTGGCTACCGTGTAGCACGTC 492
||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 421 GAATCTACGGTATGGACTTCTATGTAGTCCTAGAACGTCCTGGTTACCGTGTGGCACGTC 480
Query 493 GCAGAAGGTGCAAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGATGCAATGA 552
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 GCAGAAGATGCAAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGAGGCAATGA 540
Query 553 AATGGTTCCAGGTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCT 612
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AATGGTTCCAAGTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCT 600
Query 613 AAAACAATTCCTCCTAACTCTTTCTTCTGTTTTAGAAAACCCT-GTCTCAGTTTTGTTTA 671
|||| || ||||| ||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 601 AAAA-AAGTCCTCGAAACTCTTCCTTCTATTTTAGAAAACACTTGTCTCAGTTTTGTTTA 659
Query 672 C 672
|
Sbjct 660 C 660
> Ahg486323 jgi|Araly1|486323|fgenesh2_kg.5__2315__AT3G58700.1
Length=735
Score = 787 bits (426), Expect = 0.0
Identities = 540/595 (91%), Gaps = 7/595 (1%)
Strand=Plus/Plus
Query 25 TTTCCCGTCGGCCGGTGATAATT-TCGCAACCCAAATTCC-AAATGGCGTCGGAGAAGAA 82
||||||||||||||| ||| || ||||||||| || ||| |||||||||||||||||||
Sbjct 39 TTTCCCGTCGGCCGGAGAT--TTATCGCAACCCTAA-TCCGAAATGGCGTCGGAGAAGAA 95
Query 83 GCTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGG 142
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 96 GCTATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGG 155
Query 143 TGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTTTTGGAACAATTGAGTGGTCAGAC 202
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 156 TGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGAC 215
Query 203 TCCTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTATCAGACGTAACGAGAA 262
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 216 TCCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATCAGACGTAATGAGAA 275
Query 263 GATCGCATGCTATGTAACCGTCAGAGGTGAGAAGGCAATGCAACTACTTGAAAGTGGATT 322
||| || |||||||| || ||||| || |||||||||||||| || ||||| |||||| |
Sbjct 276 GATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGACT 335
Query 323 GAAAGTCAAGGAATACGAACTTCTC-AGAAGAAACTTCAGTGACACTGGTTGCTTCGGTT 381
|||||| || ||||| ||||| || ||||| ||||| || |||||||||||||| ||||
Sbjct 336 GAAAGTTAAAGAATATGAACT-CTTGAGAAGGAACTTTAGCGACACTGGTTGCTTTGGTT 394
Query 382 TTGGTATTCAAGAACACATTGATTTGGGTATCAAGTACGATCCATCAACTGGAATCTATG 441
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 395 TTGGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCAACTGGAATCTACG 454
Query 442 GTATGGACTTCTATGTGGTCCTAGAACGTCCTGGCTACCGTGTAGCACGTCGCAGAAGGT 501
|||||||||||||||| || || || || ||||| |||||||| |||||||||||||| |
Sbjct 455 GTATGGACTTCTATGTTGTTCTTGAGCGACCTGGTTACCGTGTGGCACGTCGCAGAAGAT 514
Query 502 GCAAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGATGCAATGAAATGGTTCC 561
|||||||||||||||| ||||| || ||||| || ||||| ||||| |||||||||||||
Sbjct 515 GCAAGGCTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCC 574
Query 562 AGGTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCTAAAA 616
|||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 575 AGGTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACTGGCTAAAA 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5