BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42750.1
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935163 jgi|Araly1|935163|scaffold_403151.1 1766 0.0
> Ahg935163 jgi|Araly1|935163|scaffold_403151.1
Length=1076
Score = 1766 bits (956), Expect = 0.0
Identities = 1037/1077 (96%), Gaps = 2/1077 (0%)
Strand=Plus/Plus
Query 78 GGATCTTTTGAAG-TTCTTCAATGGCGCAGATACTTTCCCCTGTTTGTACGGATCTTTTG 136
||||||| || || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 GGATCTTGTG-AGCTTCTTCAATGGCGCAGATACTTTCTCCTGTTTGTACGGATCTTTTG 59
Query 137 AAGTTCCAGAACTCAGCTCTTAGCTCCAGATCAGGTGCGTCGCCGCGGTTCTCGGCGAAG 196
|||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 60 AAGTTCCAGAACTCAGTTCTTAGCTCCAGATCAGGTACTTCGCCGCGTTTCTCGGCGAAG 119
Query 197 ACCACCGGTGCTTCTTCATCTTGGTACTTACCTCGGTACGCAGGAAAGAGGCGAACCGAT 256
|| | ||||||||||||||||||| ||||||||||||||| ||||||||||||| | |
Sbjct 120 ACAAGCGGTGCTTCTTCATCTTGGGGCTTACCTCGGTACGCCGGAAAGAGGCGAAGTGGT 179
Query 257 TCAATCGGAAGATTGAGAGTTGCAACTGAGGATGCTTCTTCTCTTTCCACCGGTGATGTC 316
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 TCCATCGGAAGATTGAGAGTTGCAACTGAGGATGCTTCTTCTCTTTCTACCGGTGATGTC 239
Query 317 GCCGATGATTACTATGCCGTTCTCGGACTCCTTCCAGATGCTACGCAGGAGGAGATTAAG 376
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 240 GCCGATGATTACTATGCCGTTCTCGGACTCCTTCCAGATGCCACACAGGAGGAGATTAAG 299
Query 377 AAAGCTTACTATAACTGTATGAAATCGTGCCATCCAGACTTGAGTGGCAATGACCCCGAA 436
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 300 AAAGCTTACTATAACTGTATGAAATCTTGCCATCCAGACTTGAGTGGCAATGACCCAGAA 359
Query 437 ACCACAAATTTCTGCATGTTCATTAACGATATCTATGAGATTCTCAGTGACCCTGTACAG 496
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACTACAAATTTCTGCATGTTTATTAACGATATCTATGAGATTCTCAGTGACCCTGTACAG 419
Query 497 CGTATGGTTTACGATGAAATTCATGGGTATACAGTGACTGCCATCAATCCTTTTCTTGAT 556
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGTATGGTTTACGATGAGATTCATGGGTATACAGTGACTGCCATCAATCCTTTTCTTGAC 479
Query 557 GACTCCACCCCAAGGGATCATGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAAAT 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GACTCCACCCCAAGGGATCATGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAAAT 539
Query 617 TGTGCCAATGTGGCTCCAGATATATTTCAAATTGAGGAAGACTTTGGTAGAGCAAGGGCT 676
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 540 TGTGCCAATGTGGCTCCAGATATATTTAAAATTGAGGAAGACTTTGGAAGAGCAAGGGCC 599
Query 677 TGTAATCAGCGTGGCAACCCAGATTTGGTTCAGCAAGCAGTTGAAACATGCCCGGTTGAT 736
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 TGTAATCAGCGTGGCAACCCAGATTTAGTTCAGCAAGCAGTTGAAACATGCCCGGTTGAT 659
Query 737 TGTATCCATCAGACTTCTGCTGCACAGTTGTCATTGCTTGAAGATGAAATGCGAAGGGTT 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTATCCATCAGACTTCTGCTGCACAGTTGTCATTGCTTGAAGATGAAATGCGAAGGGTC 719
Query 797 GAAAGAGTGAATGTTGCTCTGATGCTTTCTGGAATGGGGTCAGGAGCAGTTGATGTTTTC 856
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 GAAAGAGTGAATGTTGCTCTGATGCTTTCTGGAATGGGATCAGGAGCAGTTGATGTTTTC 779
Query 857 AGAATGGCGAGATCTCGATGGGAAAAGAGGCAAGCAAAAGTTTTGAATCAAGCTAGAAGT 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGAATGGCGAGATCTCGATGGGAAAAGAGGCAAGCAAAAGTTTTGAATCAAGCTAGAAGT 839
Query 917 AGAATGATGAAGAGGAAAAACACAGATGAAACACCTTCCTATTGGGATAACCTCTGGGGC 976
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 AGAATGATGAAGAGGAAAAACACAGACGAAACACCTTCCTATTGGGATAACCTCTGGGGC 899
Query 977 AAACAGAATGAATACCAGAAAAGCGAGGAAGAAGTACAAGAACGAGCACAGCGAGCCGCC 1036
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 900 AAACAGAATGATTACCAGAAAAGCGAGGAAGAAGTACAAGAACGAGTACAGCGAGCAGCA 959
Query 1037 GCAGCAGCCAGGAGATGGAGGGAATACTCACGAAGAGGCGTGGATAAGCGCCCCACCTTC 1096
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 GCAGCAGCCAGGAGATGGAGGGAATACTCACGAAGAGGCGTGGATAAGCGTCCCACCTTC 1019
Query 1097 AAACTCCCAGACTCCGCCTCCAGAGGAGACAACTGAAACCATAGACAGAAATCACTT 1153
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1020 AAACTCCCAGACTCCGCCTCCAGAGGAGACAATTGAAACCATAGACATAAATCACTT 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52069364915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5