BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42760.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483373 jgi|Araly1|483373|fgenesh2_kg.4__2433__AT2G42760.1 1424 0.0
> Ahg483373 jgi|Araly1|483373|fgenesh2_kg.4__2433__AT2G42760.1
Length=1093
Score = 1424 bits (771), Expect = 0.0
Identities = 1026/1141 (90%), Gaps = 49/1141 (4%)
Strand=Plus/Plus
Query 47 ATGGCTGGAGAGGAGTTGTTGAAACTGTTCGAGCAAAACTGGTCAGAGAGGCCAATCTTC 106
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGGCTGAAGAGGAGTTGTTGAAACTGTTCGAGCAAAACTGGTCAGAGAGATCAATCATC 60
Query 107 aagaaagacaaagagaatctgaatggaaaaagtagagagaagcgtggagaaaaagagatt 166
||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 61 AAGAAAGACAAAGAGAATCTGAATGGAAAAAGTCGAGAGAAGCGTAGAGAAACAGAGATT 120
Query 167 -ctagaggaacgacgagaagaagaagcactgaagaaTTTTCCGGTGAGCTTTCTTGTAGA 225
| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 AC-AGAGGAA--A-AAGAAGAAGAAGTGTTGAAGAATTTTCCGGTGAGCTTTCTTGTAGA 176
Query 226 GAGGGCTATGAGTGACGAGACGATGATGACGACGAGTTCCAAGACAAGTTTGTTTAGTTC 285
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGAGCTATGAGCGATGAGACGATGATGACGACGAGTTCCAAGACAAGTTTGTTTAGTTC 236
Query 286 TTCATCAGATGATTTGTTCTTGTCTCCTAGATCGGTCTTACCCGTTAAACCAACGCCGAT 345
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 237 TTCATCAGATGATTTGTTCTTGTCTCCTAGATCAGTCTTACCCGTTAAACCAACCCCGAT 296
Query 346 GAAGCTTCAGACGATCCTCTCCGGAAAAGAAGTCAACGCGTTCACGATTGCGgaaagaga 405
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGCTTCAGACGATTCTCTCCGGAAAAGAAGTCAACGCGTTCACGATTGCGGAAAGAGA 356
Query 406 gagactactttcagagaaggaagagcagaggaagaagaagaagaagaagagtaatgtgag 465
|||| || ||||||||| |||||||||||||||||||||||| |||| | | ||||||||
Sbjct 357 GAGAGTAATTTCAGAGAGGGAAGAGCAGAGGAAGAAGAAGAATAAGA-G-G-AATGTGAG 413
Query 466 aacaagaaagggaaagagTATGTCGGATTTGGAGTACGAGGAGCTTAAAGGGTTTATGGA 525
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 AACAAGAAAGGGAAAGAGTATGTCAGATTTGGAGTACGAGGAGCTTAAAGGGTTTATGGA 473
Query 526 TCTAGGTTTTGTCTTTTCCGAGGATGACCATAAAGACTCCGATCTAGTTTCGATTCTTCC 585
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 474 TCTAGGTTTTGTCTTTTCCGAGGAAGACCACAAAGACTCCGATCTGGTTTCGATTCTTCC 533
Query 586 TGGGTTACAGAGATTGGTGAAGAAAGATGATGGAGTAACAAaagaagaagaagaagaaga 645
||| || |||||||| ||||||||| |||||||||| | ||| | | || |||||||
Sbjct 534 TGGATTGCAGAGATTAGTGAAGAAAAATGATGGAGTTGTACAAGTA-AC-AA-AAGAAGA 590
Query 646 agaagaagaCAAAATCGGTGGAAACAGAGCAGCGAGACCGTATTTGTCGGAAGCGTGGGA 705
|||||| ||| | | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 591 AGAAGA---CAAGAGCAGTGGAAACAGAGTAGCGAGACCGTATTTGTCGGAAGCGTGGGA 647
Query 706 TCATTGTGGAGGAAGAAAAGGaaaaaaaCAAATCACGCCGGAGATTAAGTGGAGAGTTCC 765
||||||||||||||||||||| || | ||||| | ||||| ||||||||||||||
Sbjct 648 TCATTGTGGAGGAAGAAAAGGGAAGA------TCACGACAGAGATAAAGTGGAGAGTTCC 701
Query 766 GGCGCCGGCGGCGGCTAGCGAAGTTGACTTAAAAGATAATCTAAGGCTTTGGGCTCATGC 825
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 702 GGCGCCGGCGGC---TAACGAAGTTGACTTAAAAGATAATCTAAGGCATTGGGCTCATGC 758
Query 826 TGTGGCCTCGACTATTCGAAGTTAATACAAAAGCTTGGATTCTAAAAATGCATGCCAAAC 885
||||||||||||||||||||| ||| ||| |||||||||||||| |||| | || |
Sbjct 759 TGTGGCCTCGACTATTCGAAGATAACACA---GCTTGGATTCTAAACATGC--G--AA-C 810
Query 886 TTTTTCTGTATCTATACTTTTTGGTCATTATGGTTTTCAAATTCATGTGAATTAAAAGAA 945
|||||||||||| ||| |||||| ||| | |||||| ||| | ||| || |
Sbjct 811 TTTTTCTGTATCAATAGTTTTTGATCACTCTGGTTT--AAA-----G-GAA--AA--G-- 856
Query 946 AAAATCTGTTCACAAGAATTCGATTTTTGTTTGGTGAGAGAGATCTCTGATACGACCATT 1005
||||||||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct 857 ----TCTGTTCACAAAAATTCGATTTTTGTTAGGCGAGAGAGATCTCTGATACGACCATT 912
Query 1006 GACCCAGAACAAAAGTGTCCTTGTCGGAGAAGAGAATCTATAATGAGGTTTTTGAGTGGT 1065
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 913 GACCAAGAACAAAAGTGTCATTGTCGGAGAAGAGAATCTATGATGAGGTTTTTAAGTGGT 972
Query 1066 GGGCCAATCATATCCAATAATGCTCAACACTTGTCATATGGTTTATTGCCACGTCACTAT 1125
||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 973 GGGCCAATCATGTCCAATAATACTCAACACTTGTAATATGGTTTATTGCCACGTCACTAT 1032
Query 1126 CACATAATTCTCACACAATTGTTGTGCATAATCACGTTGATAACGACTTATTAGTGTATT 1185
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1033 CACATAATTCTCATACAATTGTTGTGCATAATCACGTTGATAACGACGTATTAGTGTATT 1092
Query 1186 A 1186
|
Sbjct 1093 A 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5