BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42790.1
Length=3249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483376 jgi|Araly1|483376|fgenesh2_kg.4__2436__AT2G42790.1 4813 0.0
Ahg486329 jgi|Araly1|486329|fgenesh2_kg.5__2321__AT3G58750.1 1530 0.0
Ahg898830 jgi|Araly1|898830|Al_scaffold_0005_2796 1208 0.0
Ahg935099 jgi|Araly1|935099|scaffold_403087.1 183 5e-45
> Ahg483376 jgi|Araly1|483376|fgenesh2_kg.4__2436__AT2G42790.1
Length=3154
Score = 4813 bits (2606), Expect = 0.0
Identities = 3014/3201 (94%), Gaps = 67/3201 (2%)
Strand=Plus/Plus
Query 58 AATGGAGATATCAGAGAGAGTTCGAGCTCGATTAGCTGTTCTCTCAGGTCATTTATCGGA 117
||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 1 AATGGAGATTTCAGAGAGAGTTCGAGCTCGATTAGCTATTCTCTCAGGGCATTTGGCGGA 60
Query 118 AGGAAAACAGGATTCTCCAGCGATCGAGCGATGGTGCACGTCGGCGGATACGAGTGTCGC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAAAACAGGATTCTCCAGCGATCGAGCGATGGTGCACGTCGGCGGATACGAGTGTCGC 120
Query 178 ACCGCTTGGATCTTTGAAGGGAACACTGACGATCGTCGACGAACGCACCGGAAAAAATTA 237
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 121 ACCGCTTGGATCTTTGAAAGGAACACTGACGATCGTCGACGAACGCACCGGGAAAAAGTA 180
Query 238 TAAAGTTCCGGTCTCAGATGATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATAG-TGA 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 181 TAAAGTTCCGGTCTCAGATGATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATAGCT-A 239
Query 297 CGGGGAAGGAAGACAAGGGGCTTAAGTTATACGATCCAGGTTACTTGAACACGGCTCCTG 356
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CCGGGAAGGAAGACAAGGGCCTTAAATTATACGATCCAGGTTACTTGAACACGGCTCCTG 299
Query 357 TTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTTCGTTACCGTGGCTACC 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 TTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTCCGTTACCGTGGCTACC 359
Query 417 CAATTGAGGAAATGGCTGAGAACAGTACTTTTCTGGAGGTGGCTTATCTTCTCATGTATG 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 CAATTGAGGAAATGGCTGAGAACAGCACTTTTCTGGAGGTGGCTTATCTTCTCATGTATG 419
Query 477 GGAATCTGCCCTCTGAAAGTCAGCTATCTGATTGGGAGTTTGCAGTTTCTCAGCATTCAG 536
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 GGAATCTGCCCTCTGAAAGTCAGCTATCGGATTGGGAGTTTGCAGTTTCTCAGCATTCAG 479
Query 537 CTGTGCCACAAGGTGTATTAGATATTATACAGTCTATGCCTCATGATGCACACCCAATGG 596
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTGTGCCACAAGGAGTATTAGATATTATACAGTCTATGCCTCATGATGCACACCCAATGG 539
Query 597 GAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCCTGATGCTAATCCTGCTC 656
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 GAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCCTGATGCAAATCCTGCTC 599
Query 657 TTAGGGGCCAGGATATTTACGATTCAAAACAAGTTAGAGATAAACAAATTATCCGCATTA 716
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 600 TTAGGGGCCAGGATATTTACGATTCTAAACAAGTTAGAGATAAACAAATTATTCGCATTA 659
Query 717 TTGGAAAGGCACCAACAATTGCAGCAGCTGCTTATCTGAGGATGGCAGGAAGGCCTCCTG 776
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 TTGGAAAGGCACCTACAATTGCAGCAGCTGCTTATCTGAGGATGGCAGGGAGGCCTCCTG 719
Query 777 TTCTTCCTTCAGGAAACCTTCCTTATGCAGATAATTTCCTCTATATGCTTGATTCCCTGG 836
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 TTCTTCCCTCAGGAAACCTTCCTTATGCAGATAATTTCCTCTATATGCTGGATTCCCTGG 779
Query 837 GAAATAGATCCTACAAACCTAATCCTCGGCTGGCTCGGGTGTTGGACATCCTCTTCATAC 896
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 GAAATAGATCCTACAAACCTAATCCTCGGCTGGCTCGGGTTTTGGACATCCTCTTCATAC 839
Query 897 TGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGCTCGGCATCTTGCCTCTAGCG 956
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 840 TGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGCTCGACATCTTGCCTCTAGCG 899
Query 957 GTGTTGATGTCTACACTGCTGTTGCTGGAGCTGTGGGAGCGCTTTATGGTCCACTTCATG 1016
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTGTTGATGTGTACACTGCTGTTGCTGGAGCTGTGGGAGCGCTTTATGGTCCACTTCATG 959
Query 1017 GTGGTGCAAACGAGGCTGTGCTTAAGATGTTGTCAGAGATTGGGACTGTTGAAAATATTC 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTGGTGCAAACGAGGCTGTGCTTAAGATGTTGTCAGAGATTGGGACTGTTGAAAATATTC 1019
Query 1077 CAGAGTTCATTGAGGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTTTTGGACACCGTG 1136
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAGAGTTCATCGAGGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTTTTGGACACCGTG 1079
Query 1137 TGTACAAAAACTATGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTGATGAAGTATTTT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGTACAAAAACTATGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTGATGAAGTATTTT 1139
Query 1197 CCATTGTTGGAAAGGATCCTCTAATTGAGGTTGCTGTTGCACTTGAGAAGGCAGCTCTCT 1256
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1140 CCATTGTTGGAAAGGATCCTCTAATTGAGGTAGCTGTTGCTCTTGAGAAGGCAGCTCTCT 1199
Query 1257 CTGACGATTACTTTGTTAAGAGAAAGCTGTATCCAAATGTTGACTTCTACTCTGGATTAA 1316
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 1200 CTGACGATTACTTTGTTAAGAGAAAGCTTTATCCAAATGTTGATTTCTACTCCGGATTAA 1259
Query 1317 TATACAGGGCAATGGGATTTCCACCGGAGTTCTTCACGGTCTTATTCGCGATTCCTCGCA 1376
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 TATACAGGGCAATGGGATTTCCACCAGAGTTCTTCACGGTCTTATTCGCGATTCCTCGCA 1319
Query 1377 TGGCTGGATACTTGTCACATTGGAAAGAGTCACTGGATGATCCTGACACCAAGATCATGA 1436
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1320 TGGCTGGATACTTGTCGCATTGGAAAGAGTCGTTGGATGATCCTGACACCAAGATCATGA 1379
Query 1437 GACCACAACAGGTGTACACAGGCGTGTGGCTGAGGCATTACACACCAGTGAGAGAGAGAA 1496
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1380 GACCACAACAGGTGTACACAGGCGTGTGGCTGAGGCATTACACGCCAGTGAGAGAGAGAA 1439
Query 1497 TAGTGACGGATGACTCGAAAGAGTCAGACAAATTGGGTCAAGTCGCGACTTCAAATGCAT 1556
| |||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1440 TTGTGACGGATGACTCTAAAGAGTCGGACAAATTGGGTCAAGTCTCGACTTCAAATGCAT 1499
Query 1557 CAAGAAGACGTTTGGCTGGATCTTCAGTTTAGACGTAGGCCCTTTTAGGGTCCATACTAT 1616
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1500 CAAGAAGACGTTTGGCTGGATCTTCAGTTTAGGCGTAGGCCCTTTTAGGGTCCATACTAT 1559
Query 1617 ACATCAAACCACACCGCAAAGAATAAAAGAGATTGGTTTCTCTAGCCTAAAGCTAAGATA 1676
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1560 ACATCAAACCACACCCCAAAGAATAAAAGAGATTGGTTTCTCTAGCCAAAAGCTAAGAGA 1619
Query 1677 CTTGATCATACTCGAAACTTA-GATTTCTCATTTTGTAGGCACAATATAGACTTGATCTA 1735
|| |||||||||| ||| ||| ||||||||||||||||||||||||| || | | || |
Sbjct 1620 CTGGATCATACTCTAAA-TTAAGATTTCTCATTTTGTAGGCACAATAAAG-CAT-AT--A 1674
Query 1736 TATTTGCTTCAATCCATCTTCTAAGGGTGTTTGTCCGC-C-TTGTTTGTCTTCTTATCAG 1793
|||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||
Sbjct 1675 TATTTGCTTCAATCCATCTTCTAAGGGTGTTTGTTCGCACCTTGTTTGTATTCTTATCAG 1734
Query 1794 AACGTGTTTATTGTATAAAATGATTTATGGTTATGGATTATTACTCTAATTTCTATATCG 1853
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1735 AATGTGTTTATCGTATAAAATGATTTATGTTTATGGATTATTACTCTAATTTCTATATCG 1794
Query 1854 AATGCTTCTGCAGAGACGTTTGTTGTGAAATATCTCGGCCAAAGCAACAAG-TAGAAAAC 1912
||||||||| | ||||| ||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 1795 AATGCTTCTACGGAGACTTTTGTTGTGAAATTTCTCGGCCAAAGCAA-AAGCTAGAAAAC 1853
Query 1913 AAAGCACTTTATTAAATCATTGTAAAAACTTTTGAAGATCTATTGTTACAAACTAGGATA 1972
||||||||||||||||||||| || |||| |||||||||||||||||||||| |||||||
Sbjct 1854 AAAGCACTTTATTAAATCATTATAGAAACCTTTGAAGATCTATTGTTACAAAATAGGATA 1913
Query 1973 TCATCAAGC--CAGAGTTTCAAAACTCGGAGTTCTTGAAACTTGAAGTAGCCATGTAAAT 2030
||||||||| || |||||||||| |||||||||||||||||||| | | || |
Sbjct 1914 TCATCAAGCTACAAAGTTTCAAAATTCGGAGTTCTTGAAACTTGA--T-G--AT--A--- 1963
Query 2031 GATACACTCGAAGAAAAA-ATGATCTGTAAAAAAGCTATATAAGTTACATTACATGTTTT 2089
|||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1964 ----CACTTGAAGAAAAATATTATCTGTAAAAA-GCTATATAAGTTACATTACATGTTTT 2018
Query 2090 TGTCTGGTGGCTGCATTTTTTGAAGTTGAAGGAGCAGTCCCAGGAAGGCCGTTGATCCTC 2149
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2019 TGTCTGGTGGCTGCATTTTTTGAAGTTGAAGGAGCAGTCCCCGGAAGGCTGTTGATCCTC 2078
Query 2150 CTTGGAGGTAGCTTTTGTCCACCAGAAGGAACGCTTCTTGAAGTTGAAGGCGCATTAGCG 2209
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct 2079 TTTGGAGGTAGCTTTTGTCCACCAGAAGGAATGCTTCTTGAAGTTGAAGTCGCATTCGCG 2138
Query 2210 GATAAGCCAGTCCTCTTTGGAGCAGATATACTATACAAGACATGATCCGTCAAACCGATC 2269
|||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||
Sbjct 2139 GATAAGCCAGTCCTCTTTGGAGCAGAAATACTAGACAAGACATGATCCATCGAACCGATC 2198
Query 2270 AAGTTTGGGGGATAAAGAA-GTGGATCCATATAGATATATAGATACTGAGGACATGTTAC 2328
||||||| || |||||||| ||||||| |||||| |||||||||||||||| ||||||||
Sbjct 2199 AAGTTTGAGG-ATAAAGAATGTGGATCGATATAGTTATATAGATACTGAGGCCATGTTAC 2257
Query 2329 CTGAAACTCTTCTGAATCGTGTTCTTTTTAGTTTCAGTAAGATTTCGTCCACCATAAGGA 2388
|||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||
Sbjct 2258 CTGAAACTCTTCTGAATCGTGTTCCTTTTAATGTCAGTAAGATTTCGTCCACCAAAAGGA 2317
Query 2389 ATGCTTCTTGAAGTTGAAGGCGAATTCGCAGATAAGCCAGTTTTCTTTGGAGTAGAAATA 2448
|||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 2318 ATGCTTCTTGAAGTTGAAGGCGCATTCGCAGATAAGCTAGTCCTCTTTGGAGTAGAAATA 2377
Query 2449 CTAGACAAGACATGATCAATCAAACCGATCAG---GTTTGGGGGAT-AACGAAT-GTGGG 2503
||||||||||||||||| ||||||||| |||| ||||||||||| || || | ||||
Sbjct 2378 CTAGACAAGACATGATCCATCAAACCGGTCAGCAAGTTTGGGGGATTAA-GA-TCGTGGA 2435
Query 2504 TTGATATAGCTAAATAGATGCTGGGGAGATGATACCTGAAACTCTTCTGAATGGTGTTCC 2563
| |||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2436 TCAATATAGATAAATAGATGCTGGGGAGATAATACCTGAAACTCTTCTGAATCGTGTTCC 2495
Query 2564 TTTTAATCGCAGTAAGATTTTTCACTTCTTGACTGTAATCAAAACCATCAGAAGATTTGA 2623
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2496 TTTTAATAGCAGTAAGATTTTTCACTTCTTGACTGTAATCAAAACCATTAGAAGATTTGA 2555
Query 2624 ATTAAGAAATAGATTGTTGCTATAAACCTTATAAGTAAGACTGGTGATTGTGCAACTTTG 2683
||||||||||||||| ||||| |||||||||||||||| || ||||||||||| ||||
Sbjct 2556 ATTAAGAAATAGATTTTTGCTCGAAACCTTATAAGTAAGCCTTGTGATTGTGCATTTTTG 2615
Query 2684 AAGTGTACCTCTTCAACAGATCTATTTTTGCCTTCTTCATGATGTTGCTCTTCACATGCC 2743
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2616 AAGTGTACCTCTTCAACAGATCTAGTTTTGCCTTCTTCATGATGTTGCTCTTCACATTCC 2675
Query 2744 CAAGATTGTAACCTGATGCACTATTACCTGCAACA-AAATCGTCC-ATATAACCATTAGA 2801
||||||||||||||||||||||||| ||||||| | ||| ||||| ||||||||| | |
Sbjct 2676 CAAGATTGTAACCTGATGCACTATTCCCTGCAA-AGAAACCGTCCCATATAACCA--A-A 2731
Query 2802 TTACAAAAGCCAGAGGGaaaaaaaaCTAATATATGCATGGAGCATTTGCATACTGTTTTT 2861
| ||||| |||||||||| |||||||||||||| ||||||| |||| |||||||
Sbjct 2732 --A-----GCCAG-GGGAAAAAAA-CTAATATATGCATGAAGCATTTCCATAATGTTTTT 2782
Query 2862 TGGCAAGATCTGACCAGATGCTGCAAGAAATCATTTAGATTaaaaaaaTGTGTTACCCCA 2921
| ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 2783 -G-CAAGATCTGACCAGATGCTGCAAAAAATCATTAAGATTAAAAAAA-GTGTTACCCCA 2839
Query 2922 AAATGGTCTTTTGCTTGGAGGAGCTTTCGAGCAGACCTTAGTTTGTCGACTTTGTTTCCC 2981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2840 AAATGGTCTTTTGCTTGGAGGAGCTTTCGAGCAGACCTTAGTTTGTCGACTTTGTTTCCC 2899
Query 2982 TGACAAAAGGAAACTGAAAACGATTACAAGGGAACGAAAGAAGAA-AATATTTTGGTCAA 3040
||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| |
Sbjct 2900 TGACAAAAGGAAACTGAAAACGATTACAAGGGAACGAAAGAAGAATAA-ATTTCAGTCTA 2958
Query 3041 AGAACATGCTTCTCATCATTGAGCTAACGGCCATAACAAAA-GACAGATTCGTAAAAAGT 3099
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct 2959 AGAACATGCTTCTCATCATTGAGCTAACGGCCATAATAAAAAGACAGATTCGTAAAA-GT 3017
Query 3100 TATACTTTCATTTTCGTCCTTGTAACGTTCTTTCAGTCGACCACCAAG-TTCCTTCTCCT 3158
|||||||||||||||||||||||||||||||||||||||| || || | || |||||| |
Sbjct 3018 TATACTTTCATTTTCGTCCTTGTAACGTTCTTTCAGTCGATCAACA-GCTTTCTTCTC-T 3075
Query 3159 T-TTGTTGCACAGCTATAACCTTCAACTGCACGAAACCATGTGCATGTATATCTTAAATA 3217
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3076 TCTTGTTGCACAGCTATAACCTTCAACTGCACGAAACCATGTGCAT--ATATCTTAAATA 3133
Query 3218 TTTCAACACTTAAATATGTAT 3238
|||||||||||||||||||||
Sbjct 3134 TTTCAACACTTAAATATGTAT 3154
> Ahg486329 jgi|Araly1|486329|fgenesh2_kg.5__2321__AT3G58750.1
Length=1972
Score = 1530 bits (828), Expect = 0.0
Identities = 1252/1456 (86%), Gaps = 31/1456 (2%)
Strand=Plus/Plus
Query 137 GCGATCGAGCGATGGTGCACGTCGGCGGATACGAGTGTC-GCACCGCTTGGATC-TTTGA 194
|||||||||| ||||||||| ||||| | | | | | ||||||| |||||| || |
Sbjct 316 GCGATCGAGCCATGGTGCACATCGGCTCACATTACCG-CTGCACCGCATGGATCGCTT-A 373
Query 195 AGGGAACA-CTGACGATCGTCGACGAACGCAC-CGGAAAAAATTATAAAGTTCCGGTCTC 252
| |||| | ||||||||||||| || || || |||| ||| ||| | || || |||||
Sbjct 374 AAGGAA-ATTTGACGATCGTCGATGAGCGTACGGGGAAGAAA-TATCAGGTCCCAGTCTC 431
Query 253 AGATG-ATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATAGTGACGGGGAAGGAAGACA 311
||| | ||||||||||||||||||||||| |||| |||||| ||||||||| || ||||
Sbjct 432 AGA-GCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGATAACGACGGGGAAAGATGACA 490
Query 312 AGGGGCTTAAGTTATACGATCCAGGTTACTTGAACACGGCTCCTGTTCGATCTTCGATTT 371
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 491 AGGGGCTTAAGTTGTACGATCCAGGTTACTTGAACACGGCTCCGGTTCGATCTTCGATTT 550
Query 372 CTTACATCGATGGAGATGAAGGGATCCTTCGTTACCGTGGCTACCCAATTGAGGAAATGG 431
||||||||| ||||||||||| ||||| ||||| || || |||||||| || ||| |||
Sbjct 551 GTTACATCGACGGAGATGAAGGAATCCTACGTTATCGGGGATACCCAATCGAAGAATTGG 610
Query 432 CTGAGAACAGTACTTTTCTGGAGGTGGCTTATCTTCTCATGTATGGGAATCTGCCCTCTG 491
|||||| |||||||||| | ||||| |||||||| ||||||||||| |||||||| |||
Sbjct 611 CTGAGAGCAGTACTTTTATTGAGGTTGCTTATCTCCTCATGTATGGAAATCTGCCTTCTC 670
Query 492 AAAGTCAGCTATCTGATTGGGAGTTTGCAGTTTCTCAGCATTCAGCTGTGCCACAAGGTG 551
||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 671 AAAGTCAGCTAGCTGATTGGGAGTTTACGGTTTCTCAGCATTCAGCTGTGCCACAAGGAG 730
Query 552 TATTAGATATTATACAGTCTATGCCTCATGATGCACACCCAATGGGAGTTCTTGTGAGTG 611
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TATTGGATATCATACAGTCCATGCCTCATGATGCACACCCAATGGGAGTTCTTGTGAGTG 790
Query 612 CAATGAGTGCGCTTTCCATCTTTCATCCTGATGCTAATCCTGCTCTTAGGGGCCAGGATA 671
| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 791 CCATGAGTGCACTTTCTATCTTTCATCCTGATGCAAATCCTGCTCTTAGTGGCCAAGATA 850
Query 672 TTTACGATTCAAAACAAGTTAGAGATAAACAAATTATCCGCATTATTGGAAAGGCACCAA 731
||||| | |||||||||||| | |||||||| ||| | || ||| | |||||||||||||
Sbjct 851 TTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTCGTATTCTCGGAAAGGCACCAA 910
Query 732 CAATTGCAGCAGCTGCTTATCTGAGGATGGCAGGAAGGCCTCCTGTTCTTCCTTCAGGAA 791
|||||||||| ||||||||| |||||| |||||| |||||||||||||||||||| || |
Sbjct 911 CAATTGCAGCGGCTGCTTATTTGAGGACGGCAGGCAGGCCTCCTGTTCTTCCTTCGGGCA 970
Query 792 ACCTTCCTTATGCAGATAATTTCCTCTATATGCTTGATTCCCTGGGAAATAGATCCTACA 851
||||| ||||| |||| ||||||||||||||||| ||||| |||||||||| || ||||
Sbjct 971 ACCTTTCTTATTCAGAGAATTTCCTCTATATGCTGGATTCAATGGGAAATAGGTCTTACA 1030
Query 852 AACCTAATCCTCGGCTGGCTCGGGTGTTGGACATCCTCTTCATACTGCATGCAGAGCATG 911
| ||||||||||| ||||||| ||| ||||||||||||||||||||||||| || ||||
Sbjct 1031 AGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCTTCATACTGCATGCTGAACATG 1090
Query 912 AAATGAACTGCTCCACCGCTGCTGCTCGGCATCTTGCCTCTAGCGGTGTTGATGTCTACA 971
| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1091 AGATGAACTGCTCTACTGCTGCTGCTCGGCATCTTGCCTCTAGTGGTGTTGATGTGTACA 1150
Query 972 CTGCT-GTTGCTGGAGCTGTGGGAGCGCTTTATGGTCCACTTCATGGTGGTGCAAACGAG 1030
||||| || ||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1151 CTGCTTGT-GCTGGAGCTGTTGGAGCGCTTTATGGTCCACTTCATGGTGGCGCGAACGAG 1209
Query 1031 GCTGTGCTTAAGATGTT-GTCAGAGATTGGGACTGTTGAAAATATTCCAGAGTTCATTGA 1089
||||||||||||||||| | ||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1210 GCTGTGCTTAAGATGTTAG-CAGAGATTGGGACAGCTGAAAATATTCCAGATTTCATTGA 1268
Query 1090 GGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTTTTGGACACCGTGTGTACAAAAACTA 1149
|| ||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1269 AGGCGTGAAGAACAGAAAGAGGAAGATGTCAGGTTTTGGACATCGTGTTTACAAAAACTA 1328
Query 1150 TGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTGATGAAGTATTTTCCATTGTTGGAAA 1209
|||||| ||||| |||||||| || || ||||| |||||||| || ||||||||||| |
Sbjct 1329 TGACCCCCGAGCAAAAGTCATAAAAAAACTGGCAGATGAAGTGTTCTCCATTGTTGGTAG 1388
Query 1210 GGATCCTCTAATTGAGGTTGCTGTTGCACTTGAGAAGGCAGCTCTCTCTGACGATTACTT 1269
||||||||| || ||||| || ||||| || |||||||| || || ||||| || || ||
Sbjct 1389 GGATCCTCTCATCGAGGTAGCAGTTGCTCTAGAGAAGGCGGCACTGTCTGATGAATATTT 1448
Query 1270 TGTTAAGAGAAAGCTGTATCCAAATGTTGACTTCTACTCTGGATTAATATACAGGGCAAT 1329
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1449 TGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTCTGGATTAATATATAGGGCAAT 1508
Query 1330 GGGATTTCCACCGGAGTTCTTCACGGTCTTATTCGCGATTCCTCGC--ATGGCTGGATAC 1387
|||||| ||||| || |||||||| ||| ||||||| | ||| ||| ||||||||||||
Sbjct 1509 GGGATTCCCACCAGAATTCTTCACAGTCCTATTCGC-AGTCC-CGCGTATGGCTGGATAC 1566
Query 1388 TTGTCACATTGGAAAGAGTCACTGGATGATCCTGACACCAAGATCATGAGACCACAACAG 1447
||||| || ||| ||||| | |||||||||||||| | |||||||||||| ||||||
Sbjct 1567 TTGTCGCACTGGCGTGAGTCGTTAGATGATCCTGACACTAGGATCATGAGACCCCAACAG 1626
Query 1448 GTGTACACAGGCGTGTGGCTGAGGCATTAC-ACACCAGTGAGAGAGA-GAATAGTGA-CG 1504
| || || || |||||| ||||||||||| | ||||||||||| | ||| || | |
Sbjct 1627 GCCTATACTGGAGTGTGGATGAGGCATTACGAG-CCAGTGAGAGA-ACGAAC-GTTATCA 1683
Query 1505 -GATGACTCGAAAGAGT-CAGACAAATTGGGTCAAGTCGCGACTTCAAATGCATCAAGAA 1562
| ||| || | | || | || || || |||||||| | | ||| |||||||||||||
Sbjct 1684 AG-TGATTC-A--G-GTACGGATAAGTTTGGTCAAGTTTCCATTTCGAATGCATCAAGAA 1738
Query 1563 GACGTTTGGCTGGATC 1578
| ||||| ||||||||
Sbjct 1739 GGCGTTTAGCTGGATC 1754
> Ahg898830 jgi|Araly1|898830|Al_scaffold_0005_2796
Length=1443
Score = 1208 bits (654), Expect = 0.0
Identities = 1115/1335 (84%), Gaps = 42/1335 (3%)
Strand=Plus/Plus
Query 177 CACCGCTTGGAT-CTTTGAAGGGAACAC-TGACGATCGTCGACGAACGCACCGG-AAAAA 233
|||||| ||||| | ||||| |||| || ||||||||||||||||||| || || |||||
Sbjct 125 CACCGCATGGATCCCTTGAA-GGAA-ACTTGACGATCGTCGACGAACGTACGGGTAAAAA 182
Query 234 ATTATAAAGTTCCGGTCTCAGATG-ATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATA 292
| ||| | || || |||||||| | ||||||||||||||||||||||| |||| ||||||
Sbjct 183 A-TATCAGGTCCCTGTCTCAGA-GCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGATA 240
Query 293 GTGAC-GGGGAAGGAAGACAAGGGGCTTAAGTTATACGATCCAGGTTACTTGAACACGGC 351
||| |||| |||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 241 ACGACAGGGG-AGGATGACAAGGGGCTTAAGTTATACGATCCTGGTTACTTAAACACGGC 299
Query 352 TCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTTCGTTACCGTGG 411
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 300 TCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTCCGTTACCGGGG 359
Query 412 CTACCCAATTGAGGAAATGGCTGAGAACAGTACTTTT-CTGGAGGTGGCTTATCTTCTCA 470
||| || | ||||| |||||||||| ||||||| | | | |||| ||||||| || |
Sbjct 360 ATACTCAGTCGAGGAGTTGGCTGAGAAAAGTACTTATACAG-AGGTTACTTATCTCCTAA 418
Query 471 TGTATGGGAATCTGCCCTCTGAAAGTCAGCTATCTGATTGGGAGTTTGC-AGTTTCTCAG 529
| |||||||||||||| ||| || | |||||| |||||||||||||||| | ||||||||
Sbjct 419 TTTATGGGAATCTGCCTTCTCAACGACAGCTAGCTGATTGGGAGTTTGCGA-TTTCTCAG 477
Query 530 CATTCAGCTGTGCCACAAGGTGTATTAGATATTATACAGTCTATGCCTCATGATGCACAC 589
||||||||||||||||||| ||||| ||| | |||||||| ||||||||||||| |||
Sbjct 478 AATTCAGCTGTGCCACAAGGAGTATTGGATCTCATACAGTCCATGCCTCATGATGTACAT 537
Query 590 CCAATGGGAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCCTGATGCTAAT 649
||||| |||| |||||| | |||||||||||| |||||||||||| |||||||||| |||
Sbjct 538 CCAATAGGAGCTCTTGTCACTGCAATGAGTGCACTTTCCATCTTTTATCCTGATGCAAAT 597
Query 650 CCTGCTCTTAGGGGCC-AGGATATTTACGATTCAAAACAAGTTAGAGATAAACAAATTAT 708
||| |||||| ||||| ||| | ||||| | |||||||||||| | |||||||| ||| |
Sbjct 598 CCTTCTCTTATGGGCCTAGG-TGTTTACCAGTCAAAACAAGTTCGTGATAAACAGATTTT 656
Query 709 CCGCATTATTGGAAAGGCACCAACAATTGCAGCAGCTGCTTATCTGAGGATGGCAGG-AA 767
|| ||| ||||| ||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 657 TCGTATTCTTGGACAGGCACCAACAATTGCAGCAGCTGCTTATTTGAGGAAGGCAGGCAA 716
Query 768 GGCCTCCTGTTCTTCCTTC-AGGAAACCTTCCTTATGCAGATAATTTCCTCTATATGCTT 826
| |||||||||| |||| || || |||| ||||| |||| ||||||||||||||| |
Sbjct 717 G-CCTCCTGTTCAACCTTTGAGCAA-CCTTTCTTATTCAGAGAATTTCCTCTATATGGTG 774
Query 827 GATTCCCTGGGAAATA-GATCCTACAAACCTAATCCTCGGCTGGCTCGGGTGTTGGACAT 885
|| || ||||||||| | || ||||| |||||||||||||| ||||| |||||||||||
Sbjct 775 GAATCAATGGGAAATAAG-TCTTACAAGCCTAATCCTCGGCTAGCTCGAGTGTTGGACAT 833
Query 886 CCTCTTCATACTGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGCTCGGCATCT 945
||||||| ||||||| || ||||| ||||||||||| || |||||||||||||||||
Sbjct 834 TATCTTCATTCTGCATGTTGAACATGAGATGAACTGCTCTACTGCTGCTGCTCGGCATCT 893
Query 946 TGCCTCTAGCGGTGTTGATGTCTACACTGCTGTTGCTGGAGCTGTGGGAGCGC-TTTATG 1004
| ||||||| ||||||||||| || ||||||||||| |||| ||| ||||| | ||||||
Sbjct 894 TTCCTCTAGTGGTGTTGATGTGTATACTGCTGTTGCGGGAGGTGTTGGAGC-CATTTATG 952
Query 1005 GTCCACTTCATGGTGGTGCAAACGAGGCTGTGCTTAAGATGTTGTCAGAGATTGGGACTG 1064
||||||||||||||||||||| |||||| | |||| ||||| ||||||||||| ||||
Sbjct 953 GTCCACTTCATGGTGGTGCAATTGAGGCTACGGTTAACATGTTATCAGAGATTGGCACTG 1012
Query 1065 TTGAAAATATTCCAGAGTTCATTGAGGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTT 1124
||||||||||||||||||||||||| | |||||||| | |||||||||| |||| ||||
Sbjct 1013 TTGAAAATATTCCAGAGTTCATTGAAAGCGTGAAGAATAAGAAGAGGAAGTTGTCGGGTT 1072
Query 1125 TTGGACACCGTGTGTACAAAAACTATGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTG 1184
|||| |||||||| |||||||| || || ||||||| |||||| | || || ||||| |
Sbjct 1073 TTGGTCACCGTGTTTACAAAAAATACGATCCTCGAGGAAAAGTCGTTAAAAAACTGGCGG 1132
Query 1185 ATGAAGTATTTTCCATTGTTGGAAAGGATCCTCTAATTGAGGTTGCTGTTGCACTTGAGA 1244
|| |||| || |||||| |||||||||||||||| ||||||| | | ||| || ||||
Sbjct 1133 ATCAAGTGTTCTCCATTCTTGGAAAGGATCCTCTGTTTGAGGTAGGAGATGCTCTAGAGA 1192
Query 1245 AGGCAGCTCTCTCTGACGATTACTTTG-TTAAGAGAAAGCTGTATCCAAATGTTGACTTC 1303
|||| || ||||| || || || ||| |||| |||||||| || ||||||| ||| |||
Sbjct 1193 AGGCGGCACTCTCGGATGAATA-TTTCATTAAAAGAAAGCTTTACCCAAATGCTGATTTC 1251
Query 1304 TACTCTGGATTAATATACAGGGCAATGGGATTTCCACCGGAGTTC-TTCACGGTCTTATT 1362
|||||||||||||| || |||||||||||| | ||| | | | | |||| || | | |
Sbjct 1252 TACTCTGGATTAATCTATAGGGCAATGGGAATCCCATC--A-T-CATTCATGG-C--AGT 1304
Query 1363 CGCGATTCCTCGCATGGCTGGATACTTGTCACATTGGAAAGAGTCACTGGATGATCCTGA 1422
||| | | | || ||||||||||||||||| ||| ||||| | |||||||||||
Sbjct 1305 CGC-A--CGT---ATTGCTGGATACTTGTCACACTGGCGTGAGTCGTTAGATGATCCTGA 1358
Query 1423 CACCAAGATCATGAGACCACAACAGGTGTACACAGGCGTGTGGCTGAGGCATTACACACC 1482
||| |||||||||||||| || ||||| || || || || |||| |||| |||| | |
Sbjct 1359 CACAAAGATCATGAGACCCCAGCAGGTCTATACTGGAATGGGGCTAAGGCGTTACG-AGC 1417
Query 1483 -AGTGAGAGAGAGAA 1496
||||||||| ||||
Sbjct 1418 TAGTGAGAGAAAGAA 1432
> Ahg935099 jgi|Araly1|935099|scaffold_403087.1
Length=399
Score = 183 bits (99), Expect = 5e-45
Identities = 115/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1103 AGGAAGAGGAAGATGTCTGGTTTTGGACACCGTGTGTACAAAAACTATGACCCTCGAGCT 1162
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 38 AGGAGGAGGAAGATGTCTGGTTTTGGACACCGTGTGTACAAAAACTATGACCCACGAGCT 97
Query 1163 AAAGTCATCAAGAACCTGGCTGATGAAGTATTTTCCATTGTTGGAAAGGATCCTCTAATT 1222
||| | |||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||
Sbjct 98 AAAATTATCAAGAACCTGGCAGATAAAGTATTTTCCATTGTTGGAAGGGATCTTCTAATT 157
Query 1223 GAG 1225
|||
Sbjct 158 GAG 160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122621500206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5