BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42800.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935169 jgi|Araly1|935169|scaffold_403157.1 2102 0.0
> Ahg935169 jgi|Araly1|935169|scaffold_403157.1
Length=1448
Score = 2102 bits (1138), Expect = 0.0
Identities = 1352/1452 (93%), Gaps = 27/1452 (2%)
Strand=Plus/Plus
Query 25 CTCTCTCTTACACCAAAACCTATGACGATGAAGAGAGCTTTACCATCTCCTTCCTCACTG 84
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTTACAGCAAATTCTATGACGATGAAGAGAGCTTTACCATCTCCTTCCTCACTG 60
Query 85 CTCTTCTTCTTTCTCCTGATAACACCACTCTTCCTCTGCCAAGAAAACAGAGTCTCTGCC 144
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 --C-TCTTCTTTCTCCTGATAACACCACTCTTTCTCTGTCAAGAAAACAGAGTCTCTGCC 117
Query 145 TCAATGCCTCCATCTGAGTCAGAAACTCTCTTCAAGATCATGGAATCAATGTCTTCTGAT 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCAATGCCTCCATCTGAGTCAGAAACTCTCTTCAAGATCATGGAATCAATGTCTTCTGAT 177
Query 205 CAACAATGGCGTCAATCCCACCCAAACCCTTGTGCACCTGGCTCATCTTGGCCAGGCATT 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CAACAATGGCGTCAATCCCACCCAAACCCTTGTGCACCTGGCTCATCTTGGCCAGGCATT 237
Query 265 GAGTGCAAAACCGGTCCAGACCACTTATCACACGTCTCTCGACTCGATTTCGGCTCTGCT 324
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 238 GAGTGCAAAACCGGTCCAGACCACTTATCTCACGTCTCTCGACTCGATTTTGGCTCTGCT 297
Query 325 CCAAACCCCTCTTGTAAAtcctctgcttctttcccttcttcaatcttcactctccctttt 384
|||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 298 CCAAACCCTTCATGTAAATCCTCTGCTTCTTTCCCTTCTTCAATCTTTTCTCTGCCTTTT 357
Query 385 ctccaatcagtcttcttcttcaactgcttcaCTCACTTCCCAACCACAATCATGTTCCCT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 358 CTCCAATCAGTCTTCTTCTTCAACTGCTTCACTCACTTCCCAACCACAATCATCTTCCCC 417
Query 445 ATAAAACTCATCCCTAACTCTTCTCTTCAACAACTTAGCCTCAGATCAAACCCTTCTCTC 504
|| || ||| |||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 ATTAAGCTCCTCCCAAATTCTTCTCTTCAACAGCTTAGCCTCAGATCAAACCCTTCTCTC 477
Query 505 TCAGGTCAAATCCCTCCTCGCATTTCTTCTCTCAAATCTTTACAAATCCTCACTCTCTCA 564
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 478 TCAGGTCAAATCCCTCCTCGCATTTCTTCTCTCAAATCATTACAGATACTCACTCTCTCA 537
Query 565 CAAAACCGATTAACCGGAGATATCCCTCCGGCGATTTTCTCATTGAAAAGCCTCGTACAC 624
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 CAAAACCGGTTAACCGGAGATATCCCTCCGGCGATTTTCTCACTGAAAAGCCTCGTACAC 597
Query 625 CTCGATCTCAGCTACAACAAGCTCACAGGTAAAATCCCTCTGCAATTAGGGAATCTAAAT 684
||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||
Sbjct 598 CTCGATCTCAGCTACAACAAGCTCACAGGTAAAATCCCTGTGCAACTGGGGAATCTCAAT 657
Query 685 AACCTCGTTGGCTTAGATTTAAGCTACAATTCTTTAACCGGTACAATCCCTCCAACGATC 744
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 AACCTCGTTGGCTTAGATTTAAGCTACAATTCGTTAACCGGTACAATCCCTCCAACGATC 717
Query 745 TCTCAACTGGGTATGCTTCAGAAACTCGACTTGAGCTCAAATTCTCTCTTCGGAAGAATC 804
|| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct 718 TCGCAACTGGGTATGCTTCAGAAACTCGACCTCAGCTCAAATTCTCTCTTAGGAAGAATC 777
Query 805 CCGGAAGGTGTAGAAAAGCTTCGTTCGTTGTCTTTCATGGCGTTGAGCAACAACAAACTA 864
|| |||||||| |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 778 CCAGAAGGTGTTGAAAAGCTTCGTTCTTTATCTTTCATGGCGTTAAGCAACAACAAACTA 837
Query 865 AAGGGAGCTTTTCCAAAAGGAATCTCGAACCTTCAGAGTTTGCAGTACTTCATAATGGAT 924
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 AAAGGAGCTTTTCCAAAAGGAATCTCGAAACTTCAGAGTTTGCAGTACTTCATAATGGAT 897
Query 925 AATAACCCAATGTTCGTTGCTCTCCCCGTTGAATTAGGGTTTCTTCCTAAACTTCAAGAG 984
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 898 AATAACCCAATGTTCGTTGCTCTCCCTGTTGAATTAGGGTTCCTACCTAAACTTCAAGAG 957
Query 985 CTCCAGCTCGAGAATTCTGGATATTCCGGCGTAATCCCGGAGAGTTACACCAAATTGACG 1044
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 CTCCAGCTCGAGAATTCAGGATATTCCGGCGTAATCCCGGAGAGTTACACCAAATTGATG 1017
Query 1045 AACCTTAGCTCGTTGTCTCTTGCTAACAACAGATTAACCGGCGAAATCCCATCAGGGTTT 1104
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 1018 AACCTTAGCTCGTTGTCTCTGGCTAACAACAGATTAGCCGGCGAAATCCCATCTGGGTTT 1077
Query 1105 GAGTCTCTGCCACACGTTTTCCATCTGAATCTCAGCAGGAACTTACTGATCGGCGTTGTT 1164
||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1078 GAGTCACTGCCTCACGTTTTCCATCTGAATTTCAGCAGGAACTTACTGATCGGCGTCGTA 1137
Query 1165 CCGTTTGATTCAAGTTTCTTAAGACGGTTGGGTAAGAACTTGGATTTGAGCGGGAACAGA 1224
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 CCGTTTGATTCGAGTTTCTTAAGACGGTTGGGTAAAAACTTGGATTTGAGCGGGAACAGA 1197
Query 1225 GGATTGTGTCTGAATCCGGAGGATGAGTTTAGTGTTGTCAAGACCGGGGTTGATGTATGC 1284
||||||||| |||| |||||||||||||| ||||| || |||||||| |||||||| |||
Sbjct 1198 GGATTGTGTTTGAACCCGGAGGATGAGTTCAGTGTCGTTAAGACCGGAGTTGATGTCTGC 1257
Query 1285 GGGAAGAACGTTAGTAGTGGTGGAGGTTTATCGGTGCATTCATCGAAGAAGAAATCTCAA 1344
|||||||| |||| | ||||||||| |||| ||||| ||||| |||||||||||||||||
Sbjct 1258 GGGAAGAATGTTACTGGTGGTGGAGTTTTACCGGTGTATTCACCGAAGAAGAAATCTCAA 1317
Query 1345 GCT--TC-T-C--GGTATTACAGATCTTGCTTCTTCGCCAATGCTCTGTTTC------C- 1391
||| || | | ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1318 GCTGCTCCTTCTCGGTATTACAGATCTTGCTTCTTCTCCAATGCTCTGTTTCAATTTGCT 1377
Query 1392 --GTTT------GCTCTGTTTCT-AGGTTTACATCAACGATGGGTTCTCTAAGAGTGAG- 1441
|||| ||||||||||| || |||||||||||||| ||||||||||||| |||
Sbjct 1378 CTGTTTCAATTTGCTCTGTTTCTTAG-TTTACATCAACGATTGGTTCTCTAAGAGGGAGG 1436
Query 1442 ATAAAGACAAAA 1453
||||||||||||
Sbjct 1437 ATAAAGACAAAA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5