BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G42820.1

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321961 jgi|Araly1|321961|fgenesh1_pm.C_scaffold_4002018           793    0.0  


> Ahg321961 jgi|Araly1|321961|fgenesh1_pm.C_scaffold_4002018
Length=477

 Score =  793 bits (429),  Expect = 0.0
 Identities = 461/477 (97%), Gaps = 0/477 (0%)
 Strand=Plus/Plus

Query  245  ATGGGTTTCATTATTGCGATTGCAAAACGTTTTGATGCTCTAGTTGGGCCTGGAGTCATG  304
            |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1    ATGGGTGTCATTATTGTGATTGCAAAACGTTTTGATGCTCTAATTGGGCCTGGAGTCATG  60

Query  305  CTTCTCTATCCTCTGTATGCATCATTTCGAGCAATAGAGAGTCCAACAATGTTAGATGAT  364
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61   CTTCTTTATCCTCTGTATGCATCATTTCGAGCAATAGAGAGTCCAACGATGTTAGATGAT  120

Query  365  CAACAATGGCTTACATATTGGATCATTTACTCTTTAATAACGATATTCGAGCTATCCGTT  424
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  121  CAACAATGGCTTACATATTGGATCATTTACTCCTTAATAACGATATTTGAGCTATCCGTT  180

Query  425  TGGAGAGTCCTTGCCTGGCTACCATTTTGGCCATACTTGAAGCTTTTGTTCTGTATGTGG  484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TGGAGAGTCCTTGCCTGGCTACCATTTTGGCCATACTTGAAGCTTTTGTTCTGTATGTGG  240

Query  485  TTGGTGCTACCAATGTTCAGTGGTGCAGCTTACATTTACTCCAATTTTGTTAGACAATAC  544
            ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct  241  TTGGTGCTACCAATGTTTAGTGGTGCAGCCTACATTTACTCCAATTTTGTGAGACAATAC  300

Query  545  GTCAAAATTGGGATGAATGTTGGAGGAGGAACGAATTATACAGACGAACAAAGAAGAGTT  604
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  301  GTCAAAATTGGGATGAATGTTGGAGGAGGAACGAATTATACAGATGAACAGAGAAGAGTT  360

Query  605  TTACAGATGATGAGTCTTGATGCTAGAAAATCGGTTCAAGACTACGTTGACCGGTTTGGA  664
            ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct  361  TTACAGATGATGAGTCTTGATGCTAGAAAATCGGTTCAAGATTATGTCGACCGGTTTGGA  420

Query  665  TGGGATTCTGTTGAGAAAGCAATCAAAGCGGCTGAAAAAGAAACTAGAAAGCATTGA  721
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  421  TGGGATTCTGTTGAGAAAGCAATCAAAGCGGCTGAAAGAGAAACTAGAAAGCATTGA  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31184546106


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5