BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42830.2
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321962 jgi|Araly1|321962|fgenesh1_pm.C_scaffold_4002019 1269 0.0
Ahg486333 jgi|Araly1|486333|fgenesh2_kg.5__2325__AT3G58780.1 682 0.0
> Ahg321962 jgi|Araly1|321962|fgenesh1_pm.C_scaffold_4002019
Length=747
Score = 1269 bits (687), Expect = 0.0
Identities = 727/747 (97%), Gaps = 0/747 (0%)
Strand=Plus/Plus
Query 188 ATGGAGGGTGGTGCGAGTAATGAAGTAGCagagagcagcaagaagatagggagagggaag 247
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAGGGTGGTGCGAGTAATGAAGTAGCAGAGAGCAGCAAGAAGATAGGAAGAGGGAAG 60
Query 248 atagagataaagaggatagagaACACTACGAATCGTCAAGTCACTTTCTGCAAACGACGC 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGAGATAAAGAGGATAGAGAACACTACGAATCGTCAAGTCACTTTCTGCAAACGACGC 120
Query 308 AATGGTTTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCTCTT 367
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AATGGTTTGCTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGATGCTGAGGTTGCTCTT 180
Query 368 GTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGAACA 240
Query 428 ATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAAGCT 487
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 ATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCGTCACCGAAGCT 300
Query 488 AATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATTCAG 547
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AATACTCAGTACTATCAGCAAGAGGCGTCTAAACTTCGGAGACAGATTCGGGACATTCAG 360
Query 548 AATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAG 607
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATTTGAACAGACATATTCTGGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTCAAG 420
Query 608 AACCTTGAAAGTAGGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGAGATG 667
|||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct 421 AACCTTGAAAGTAGGCTTGAGAAAGGAATCGGCCGTGTCCGCTCAAAGAAGCACGAGATG 480
Query 668 TTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGAAATCGAGCTGCAAAACGAT 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGAAATCGAGCTGCAAAACGAT 540
Query 728 AACATGTATCTCCGCTCCAAGATTACTGAAAGAACAGGTCTACAGCAACAAGAATCGAGT 787
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 541 AACATGTATCTCCGCTCCAAGATTACTGAAAGATCAGGTCTACAGCAGCAAGAATCGAGT 600
Query 788 GTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCGGGGCAG 847
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 601 GTGATACATCAAGGGACAGTTTACGAGTCGGGTGTTACTTCTTCTCACCAGTCAGAGCAG 660
Query 848 TATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAATCAGAATTCCTCCAACCAA 907
|| ||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||
Sbjct 661 TACAACCGGAATTATATTCCGGTTAACCTGCTTGAACCAAATCAGAATGCCTCCAACCAA 720
Query 908 GACCAACCACCTCTGCAACTTGTTTGA 934
|||||||||||||||||||||||||||
Sbjct 721 GACCAACCACCTCTGCAACTTGTTTGA 747
> Ahg486333 jgi|Araly1|486333|fgenesh2_kg.5__2325__AT3G58780.1
Length=1182
Score = 682 bits (369), Expect = 0.0
Identities = 637/762 (84%), Gaps = 36/762 (5%)
Strand=Plus/Plus
Query 187 AATGGAGGGTGGTGCGAGTAATGAAGTA-GCagagagcagcaagaagatagggagaggga 245
|||||||| |||| ||||| | | | | | |||||| ||||||||||||||||||||||
Sbjct 326 AATGGAGGAAGGTGGGAGTAGTCACG-ACGGAGAGAGTAGCAAGAAGATAGGGAGAGGGA 384
Query 246 agatagagataaagaggatagagaACACTACGAATCGTCAAGTCACTTTCTGCAAACGAC 305
| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 385 AAATAGAGATAAAGAGGATAGAGAACACAACAAATCGTCAAGTAACTTTCTGCAAACGAC 444
Query 306 GCAATGGT-TTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCT 364
|||||||| || ||||||||||||||||| ||||| ||||||||||| || || |||||
Sbjct 445 GCAATGGTCTT-CTCAAGAAAGCTTATGAACTCTCAGTCTTGTGTGATGCGGAAGTTGCC 503
Query 365 CTTGTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGA 424
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 504 CTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGTGTGAGGGGA 563
Query 425 ACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAA 484
||||| |||||||||||||||||||| ||||| ||||| |||||||| || ||||||||
Sbjct 564 ACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAA 623
Query 485 GCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATT 544
|||||||||||||||||||||||||| || ||||| || ||||| |||||||| || |||
Sbjct 624 GCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGAGATATT 683
Query 545 CAGAATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTC 604
||||||| ||||| || ||| |||| ||||| ||||||||||||||||| ||||| |||
Sbjct 684 CAGAATTCAAACAGGCATATTGTTGGGGAATCACTTGGTTCCTTGAACTTAAAGGAGCTC 743
Query 605 AAGAACCTTGAAAGTA-GGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGA 663
|| ||||| ||| | | ||||||| ||||||||||| |||||||||||||| ||| ||||
Sbjct 744 AAAAACCTCGAAGG-ACGGCTTGAAAAAGGAATCAGCCGTGTCCGATCCAAAAAGAACGA 802
Query 664 GATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGAAATCGAGCTGCAAAA 723
| ||||||| |||||||| || || ||||| || |||| ||| | ||| ||||| |
Sbjct 803 GCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGG-AAATG-----GAGTTGCAACA 856
Query 724 CGATAACATGTATCTCCGCTCCAAGATTA-CTGAAAGAAC-AGGTCT-A--CAGCAACA- 777
| |||||||||| || || | ||||| | | ||| | | || | | | | | ||||
Sbjct 857 CAATAACATGTACCTGCGAGCTAAGAT-AGCCGAAGGTGCCAGAT-TGAATCCGGAACAG 914
Query 778 -AG-AATCGAGTGTGATACATCAAGGGAC-A--GTTTACGAGTCGGGTGT-TACTTCTTC 831
|| |||||||||||||||| | ||||| | |||||||| || ||||| | ||||| |
Sbjct 915 CAGGAATCGAGTGTGATACA--A-GGGACGACTGTTTACGAATCCGGTGTAT-CTTCT-C 969
Query 832 -TCACCAGTCGGGGCAGT-ATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAAT 889
| |||||||| ||| | |||| ||||| |||||| |||| ||||||||||||||||||
Sbjct 970 ATGACCAGTCGCAGCA-TCATAATCGGAACTATATTCCGGTGAACCTTCTTGAACCGAAT 1028
Query 890 CAG-AATTCCTCCAACCAAGACCAACCACCTCTGCAACTTGT 930
||| ||||| ||| |||||||||||| ||||| || |||||
Sbjct 1029 CAGCAATTC-TCCGGCCAAGACCAACCTCCTCTTCAGCTTGT 1069
Score = 60.2 bits (32), Expect = 3e-08
Identities = 39/42 (93%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 39 GAAGCAGCAGTTAAGTGGTACTGAGATAA-TAAGAATAGTAT 79
||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 209 GAAGCAGCAGTTAAGTGGTACTGAGATAAATAATAATA-TAT 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5