BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42850.1
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346095 jgi|Araly1|346095|fgenesh1_pg.C_scaffold_4002437 2333 0.0
> Ahg346095 jgi|Araly1|346095|fgenesh1_pg.C_scaffold_4002437
Length=1458
Score = 2333 bits (1263), Expect = 0.0
Identities = 1393/1458 (96%), Gaps = 0/1458 (0%)
Strand=Plus/Plus
Query 8 ATGGTTTTAGAACCAAACTTCGTTCTCTCATGGGTCTTCTTATGCATAGCTGCAACAATC 67
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTTTTAGAACCAAACTTCGTTCTCTCATGGGTTTTCTTATGCATAGCTGCAACAATC 60
Query 68 TCCAGCACACTTTTCTTCTTCCGCAAGAAACATCACCGATTCATAACAAAGAAGATTCAG 127
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCCAGCACACTTTTCTTCTTTCGCAAGAAACCTCACCGATTCATAACAAAGAAGATTCAG 120
Query 128 AAGAAAAAGAAGCTTCTTCCTGGAGAAATGGGGCTTCCATGGATTGGTGAAACAATGGAT 187
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGATAAAGAAGCTTCCTCCTGGAGAAATGGGGCTTCCATGGATTGGTGAAACAATGGAG 180
Query 188 TTCTACAAAGCTCAGAAAAGCAACAGAGTTTTTGAGGATTTTGTAAATCCAAGGATCATC 247
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TTCTACAAAGCTCAGAAAAGCAACAGAGTGTTTGAGGATTTTGTAAATCCAAGGATCATC 240
Query 248 AAACATGGGAACATCTTCAAGACAAGAATCATGGGATCACCAACAATAGTAGTCAATGGA 307
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAACACGGGAACATCTTCAAGACAAGAATCATGGGATCACCAACAATAGTAGTCAATGGA 300
Query 308 GCTGAAGCCAATAGGCTCATATTATCCAACGAGTTTAGCTTGGTGGTGAGCTCGTGGCCT 367
|||||||||||||| || ||||| ||||| |||||| |||||||||||||||| ||||||
Sbjct 301 GCTGAAGCCAATAGACTTATATTGTCCAATGAGTTTGGCTTGGTGGTGAGCTCATGGCCT 360
Query 368 TCATCTTCTGTTCAACTAATGGGCATGAACTGCATCATGGCTAAACAAGGCGAGAAGCAT 427
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCATCTTCTGTTCAGCTAATGGGCATGAACTGCATCATGGCTAAACAAGGCGAGAAGCAT 420
Query 428 CGGGTCCTCAGAGGGATTGTAGCTAATAGTCTTAGCTACATTGGGTTAGAGTCCTTAATA 487
|||||||| |||||||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 421 CGGGTCCTTAGAGGGATTGCAGCTAATAGTCTTAGCTACAATGGGTTAGAGTCCTTAGTA 480
Query 488 CCTAAGCTCTGTGATACCGTTAAGTTTCATCATGAAACCGAATGGCGAGGCAAGGAAGAG 547
|||||||| ||||| || ||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 481 CCTAAGCTATGTGACACTGTTAAGTTTCATCTTGAAACCGAATGGCAAGGCAATGAAGAG 540
Query 548 ATTAGCCTCTACCGTTCGGCAAAAGTTCTCACTTTCACTGTAGTATTTGAGTGTTTGTAT 607
||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 541 ATTAGTCTCCACCGTTCGGCAAAAGTTCTCACTTTTACTGTAGTCTTTGAGTGTTTGTAT 600
Query 608 GGGATAAAAGTGGAGATTGGGATGTTAGAGGTCTTTGAGAGGGTTTTAGAAGGTGTTTTC 667
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 601 GGGATAAAAGTGGAGATTGGGATGTTAGGGGTCTTTGAGAGGGTTTTAGAAGGAGTTTTC 660
Query 668 GCTTTGCCGGTTGAGTTTCCTTGTTCTAAGTTTGCTAGAGCAAAGAAAGCAAGGCTAGAG 727
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GCTTTGCCTGTTGAGTTTCCTTGTTCTAAGTTTGCTAGAGCGAAGAAAGCAAGGCTAGAG 720
Query 728 ATAGAGACATTTCTAGTTGGGAAGGTCAGGGAGAAGCGAAGAGAAATGGAAAAAGAGGGA 787
|||||||||||||| ||||||||||| ||||||||| ||| |||||||||| | |||||
Sbjct 721 ATAGAGACATTTCTGGTTGGGAAGGTTAGGGAGAAGAGAAAAGAAATGGAAGAGGAGGGC 780
Query 788 GCTGAGAAGCCAAACACAACGCTTTTCTCGAGGCTAGTAGAAGAGTTGATCAAAGGTGTG 847
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GCTGAGAAGCCAAGCACAACGCTTTTCTCGAGGCTAGTAGAAGAGTTGATCAAAGGCGTG 840
Query 848 ATAACCGAAGAAGAGGTTGTAGATAATATGGTTTTGCTAGTGTTTGCAGCTCATGACACA 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATAACCGAAGAAGAGGTTGTAGATAATATGGTTTTGCTAGTGTTTGCAGCTCATGACACA 900
Query 908 ACCTCTTACGCCATGTCCATGACTTTCAAGATGTTAGCTCAGCACCCAACTTGTCGTGAC 967
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 ACCTCTTACGCCATGGCCATGACTTTCAAGATGTTAGCTCAGCACCCAACTTGCCGTGAC 960
Query 968 ACTCTCCTTCAAGAACATGCTCAAATAAAAGCAAACAAAGGGGAAGGAGAATATCTTACA 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 961 ACTCTCCTTCAAGAACATGCTCAAATAAAAGCAAACAAAGGGGAAGGAGAATATCTTTCA 1020
Query 1028 GTGGAAGATGTGAAAAAGATGAAGTATAGTTGGCAAGTTGTTCGTGAAACAATGCGATTA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTGGAAGATGTGAAAAAGATGAAGTATAGTTGGCAAGTTGTTCGTGAAACAATGCGATTA 1080
Query 1088 TCCCCTCCAATCTTCGGTTCTTTCAGAAAAGCAGTGGCTGATATTGACTATGGAGGATAC 1147
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
Sbjct 1081 TCCCCTCCAATCTTCGGTTCTTTCAGAAAAGCAGTTGCTGACATTGACTATGGAGGTTTC 1140
Query 1148 ACAATCCCCAAAGGCTGGAAGATACTCTGGACCACTTATGGAACTCATTATAATCCTGAA 1207
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 1141 ACAATCCCCAAAGGCTGGAAGATACTTTGGACAACTTACGGAACTCATTACAATCCTGAA 1200
Query 1208 ATATTTCAAGATCCAATGAGTTTTGATCCAACAAGATTTGATAAGCCAATACAGGCATAT 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ATATTTCAAGATCCAATGAGTTTTGATCCAACAAGATTTGATAAGCCAATACAGGCATAT 1260
Query 1268 ACATATCTACCATTTGGAGGTGGACCAAGGCTTTGTGCAGGTCACCAACTAGCCAAAATC 1327
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1261 ACTTATCTACCATTTGGAGGTGGACCAAGGCTTTGTGCAGGTCACCAACTAGCAAAAATC 1320
Query 1328 AGCATTCTCGTTTTCATGCATTTTGTTGTGACAGGTTTTGACTGGTCCTTAGTCTACCCA 1387
||||||||||||||| |||| || |||||||| ||||| || ||||||||||||||||||
Sbjct 1321 AGCATTCTCGTTTTCTTGCACTTCGTTGTGACCGGTTTCGATTGGTCCTTAGTCTACCCA 1380
Query 1388 GATGAGACAATTAGCATGGATCCTCTCCCATTTCCGTCCCTTGGAATGCCAATCAAAATT 1447
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1381 GATGAGACAATCAGCATGGATCCTCTTCCATTTCCGTCTCTTGGAATGCCAATCAAAATC 1440
Query 1448 TCTCCCAAGGTGTCATAG 1465
||||||||||||||||||
Sbjct 1441 TCTCCCAAGGTGTCATAG 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59496962690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5