BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42860.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935175 jgi|Araly1|935175|scaffold_403163.1 516 2e-145
> Ahg935175 jgi|Araly1|935175|scaffold_403163.1
Length=746
Score = 516 bits (279), Expect = 2e-145
Identities = 379/424 (89%), Gaps = 19/424 (4%)
Strand=Plus/Plus
Query 75 GGACACATACCAGAACAGGGATGGAAAAGGTAGGTGAAGATGAGGAGAAGACCATTGAAG 134
||||||||| ||||||||| |||||||||||| | | ||| || ||||||||||||
Sbjct 2 GGACACATAGCAGAACAGGAATGGAAAAGGTA---G--G-TGA--AG-AGACCATTGAAG 52
Query 135 AAGCAAACAACTCAACTGAGGAGACGAAGAGTGATA-AAGAGGAGGAAAGGATAAAAGGT 193
|| |||||||||||| ||| ||||||| |||||| | | || || |||||||||| ||||
Sbjct 53 AACCAAACAACTCAATTGACGAGACGAGGAGTGA-AGAGGAAGATGAAAGGATAAGAGGT 111
Query 194 ACT-ATTGCTGATCAGGTTGATCCAGTAGATTCCACTGAAGAAGGTTCTACGGGTCCATC 252
| | |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 112 A-TAATTGCTGATCGGGTTGATCCAGTAGATTCCACAGAAGAAGGCTCTACGGGTCCATC 170
Query 253 CAACTCACACACTGTAGTCTCCAAAGATCATGATTTTAGTGAATCTGATATGGAGGACGA 312
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CAACTCACACACTATAGTCTCCAAAGATCATGATTTTAGTGAATCTGATATGGAGGACGA 230
Query 313 AGAGCAGGTTCTCGAGTTTTTCAGACGTAATCAC-GGTTTT-TCACCTGAGGTCACCAAG 370
|||||||||||| |||||||||||||||| | | ||||| | |||||||||| |||||
Sbjct 231 AGAGCAGGTTCTTGAGTTTTTCAGACGTAGT-AGTGGTTTGCT-ACCTGAGGTCGCCAAG 288
Query 371 AGAAACAACTTCCCATATGTTAACAACTCTGAAAGGA-TGGTACTTCAGTTCCAAGAAGA 429
|||||||||||||| ||| ||||||| || ||| ||| |||||||||||||||||||||
Sbjct 289 AGAAACAACTTCCCTTATCTTAACAAATCCGAA-GGAATGGTACTTCAGTTCCAAGAAGG 347
Query 430 CACTTCTGCAGAAACAGAACAAACAAATGAAATGTTCCACAGTTTGAATGATAGCAACGA 489
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 348 CACTCCTGCAGAAACAGAACAAACAAATGTAATGTTCCACAGTTTGAATGATAGCAACGA 407
Query 490 GATT 493
||||
Sbjct 408 GATT 411
Score = 481 bits (260), Expect = 6e-135
Identities = 284/296 (96%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 494 CTTGAAGGAACCAAGTCATCATCAGCTTCAGATGAGGATACCGAGGACTCATCTAGTAAC 553
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CTTGAAGGAATCAAGTCATCATCAGCTTCAGATGAGGATACCGAGGACTCATCTAGTAAC 510
Query 554 TCAGACCTTGATTCCAGCCTTTCCAGGTATTATTTTGACGGATCCTTACCGGTTTCAGCT 613
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TCAGACCTTGATTCTAGCCTTTCCAGGTATTATTTTGACGGATCCTTACCGGTTTCAGCT 570
Query 614 CATGTCGAAGAATTTGAAACTCATCAAGATGAATCCCTTGTACCTAAAGATGAAAACCAG 673
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 571 CATGTCGAAGAATTTGAAACCCATCAAGATGAATCCCCTGTACCTAAACATGAAAACCAG 630
Query 674 ATGCCTCTGCTGTGTCTCAAGCAACCCATGCTGCAACCAACTTCATGGAGAAATTGCTGT 733
||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 631 ATGCCTCTGTTGTGCCTCAAGCAACCCGTGCTGCAACCAACATCATGGAGAAATTGCTGT 690
Query 734 GGACTCCTCGAGCTTCTCTGGGCTGCTGATCCATAAATTTCAGATACGAGGAAAAT 789
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 691 GGACTCCTCGAGCTTCTCTGGGCTGCTGATCCATAAAATTCAGGTACGAAGAAAAT 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5