BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42870.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497523 jgi|Araly1|497523|fgenesh2_kg.713__1__AT2G42870.1 869 0.0
Ahg935176 jgi|Araly1|935176|scaffold_403164.1 614 4e-175
> Ahg497523 jgi|Araly1|497523|fgenesh2_kg.713__1__AT2G42870.1
Length=808
Score = 869 bits (470), Expect = 0.0
Identities = 742/859 (86%), Gaps = 75/859 (9%)
Strand=Plus/Plus
Query 1 ATCCACATTCCTTACTTGTTCATTATTCTCTCAGACTCATCA---TTC-ATCTCTCTCT- 55
||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||
Sbjct 1 ATCCACATTCCTTACTTCTTCATTATTCTCTCAAACTCATCATTCTTCTCTCTCTCTCTC 60
Query 56 T-TCT--TTCAATGGAAGAAACTCTAGCCACTCCCGACGCCACGAGACGCTCTCTGTCAC 112
| ||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 TCTCTCCTTCAATGGAAGAAACTTTAGCCACTCCCGACACCACGAGACGCTCTCTGTCAC 120
Query 113 CGTCATGCTCAGCCACCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCAAACGGA 172
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTCGTGCTCAGCCGCCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCAAACGGA 180
Query 173 GATTGTCAGAGACTAACGCAAGCGTACGTgaagaccgagaagaagcagaagaagaagaag 232
||||||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||
Sbjct 181 GATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGGGAAGAAG-A-A-GAAGAAGAAG 237
Query 233 aTGAGGTCAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAGCGGCGCTTG 292
| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 ACGAGGTAAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAACGGCGCTTG 297
Query 293 GTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTCTGTCTCTACAATGTCAGATCA 352
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 GTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTATGTCTCTACAATGTCAGATCA 357
Query 353 AAACCATTAAAGTCCTTACTTCGTTTCTTCAACGCATAGATCAAGAAGACATGAAGTTCG 412
||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 358 AAACCATTAAAGTTCTTACTTCGTTTCTCCAACGCGTAGATCAAGAAGACATGAAGTTCG 417
Query 413 GAGGTTGAAGATTATCACACCAAGACTGCTCTTCTTTCTTCGATTCCTaaaaacaaaaaa 472
|||||||||||| | |||||||||| | || || |||| || |||| |||||||
Sbjct 418 GAGGTTGAAGATGACCACACCAAGA-T--TC--CT--CTTC--TT---AAAACCAAAAAA 465
Query 473 aaaCGtttttttttttcaaatcttttatttccttttttATAACATGGGATTTTAGCTTTG 532
|||| | ||||||||| ||||| ||| |||| ||||||||||||||||||||||
Sbjct 466 AAAC-TCTTTTTTTTT----TCTTTCCTTT--TTTT--ATAACATGGGATTTTAGCTTTG 516
Query 533 ATATATGAGGAAAGAGACTCAACAtttttttcttcgaattttttttttCTTTAGTAGGAG 592
||||||||||||||||| | ||||| ||| || | | | || |
Sbjct 517 ATATATGAGGAAAGAGA-T-----TTTTT--CTT-GAGTAGGAGT-------A-TA--A- 556
Query 593 TATAATCTTTAATTTT-AATGTTCTGATTTATTTATTAAGCCGTTTCACGGTTATGAGAA 651
| |||||||||||||| || |||||| |||||||| | | |||||| ||||||||||
Sbjct 557 T-TAATCTTTAATTTTTAA-GTTCTGGTTTATTTA--A-GTCGTTTCGTAGTTATGAGAA 611
Query 652 GTGTTCATTAACGAAAATTAGCATTAAT-TA---A-----TGTAGTTA---TA-TA-A-C 696
||||||||||||||||||||||| |||| || | |||||||| || || | |
Sbjct 612 GTGTTCATTAACGAAAATTAGCACTAATGTAGCTAGGGAGTGTAGTTACACTACTATAAC 671
Query 697 TTATTTTAGTAGGACGCCATATAGTATAGATATTAAATTGGATCACGAGGTTTCACTTGC 756
|||||||||| ||||||||||||| ||| ||||||||||||||||||||| | |||||
Sbjct 672 TTATTTTAGTTGGACGCCATATAG-ATACTTATTAAATTGGATCACGAGGTAGCCCTTGC 730
Query 757 ATATGAGATTTGACATTAATGATATTGAGAAAGTTAATGTTACGTGGCCCATTTTTAAAT 816
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 731 ATTTGAGATTTGACATTAATGATATTGAGAAAGTTAATGTTACGTGGCCCATTTTGAA-T 789
Query 817 CTGGATGAGCTCATTTCAC 835
|||| ||||||||||||||
Sbjct 790 CTGGGTGAGCTCATTTCAC 808
> Ahg935176 jgi|Araly1|935176|scaffold_403164.1
Length=397
Score = 614 bits (332), Expect = 4e-175
Identities = 372/391 (95%), Gaps = 3/391 (1%)
Strand=Plus/Plus
Query 47 TCTCTCTCTTTCTTTCAATGGAAGAAACTCTAGCCACTCCCGACGCCACGAGACGCTCTC 106
||||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 7 TCTCTCTCTCTCCTTCAATGGAAGAAACTTTAGCCACTCCCGACACCACGAGACGCTCTC 66
Query 107 TGTCACCGTCATGCTCAGCCACCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCA 166
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 67 TGTCACCGTCGTGCTCAGCCGCCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCA 126
Query 167 AACGGAGATTGTCAGAGACTAACGCAAGCGTACGTgaagaccgagaagaagcagaagaag 226
||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||
Sbjct 127 AACGGAGATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGGGAAGAAG-A-A-GAAG 183
Query 227 aagaagaTGAGGTCAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAGCGG 286
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 184 AAGAAGACGAGGTAAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAACGG 243
Query 287 CGCTTGGTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTCTGTCTCTACAATGTC 346
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 CGCTTGGTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTATGTCTCTACAATGTC 303
Query 347 AGATCAAAACCATTAAAGTCCTTACTTCGTTTCTTCAACGCATAGATCAAGAAGACATGA 406
||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 304 AGATCAAAACCATTAAAGTTCTTACTTCGTTTCTCCAACGCGTAGATCAAGAAGACATGA 363
Query 407 AGTTCGGAGGTTGAAGATTATCACACCAAGA 437
|||||||||||||||||| | ||||||||||
Sbjct 364 AGTTCGGAGGTTGAAGATGACCACACCAAGA 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5