BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G42870.1 Length=835 Score E Sequences producing significant alignments: (Bits) Value Ahg497523 jgi|Araly1|497523|fgenesh2_kg.713__1__AT2G42870.1 869 0.0 Ahg935176 jgi|Araly1|935176|scaffold_403164.1 614 4e-175 > Ahg497523 jgi|Araly1|497523|fgenesh2_kg.713__1__AT2G42870.1 Length=808 Score = 869 bits (470), Expect = 0.0 Identities = 742/859 (86%), Gaps = 75/859 (9%) Strand=Plus/Plus Query 1 ATCCACATTCCTTACTTGTTCATTATTCTCTCAGACTCATCA---TTC-ATCTCTCTCT- 55 ||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||| Sbjct 1 ATCCACATTCCTTACTTCTTCATTATTCTCTCAAACTCATCATTCTTCTCTCTCTCTCTC 60 Query 56 T-TCT--TTCAATGGAAGAAACTCTAGCCACTCCCGACGCCACGAGACGCTCTCTGTCAC 112 | ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 61 TCTCTCCTTCAATGGAAGAAACTTTAGCCACTCCCGACACCACGAGACGCTCTCTGTCAC 120 Query 113 CGTCATGCTCAGCCACCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCAAACGGA 172 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CGTCGTGCTCAGCCGCCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCAAACGGA 180 Query 173 GATTGTCAGAGACTAACGCAAGCGTACGTgaagaccgagaagaagcagaagaagaagaag 232 ||||||||||||||||||||||||||||||||||||| ||||||| | | |||||||||| Sbjct 181 GATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGGGAAGAAG-A-A-GAAGAAGAAG 237 Query 233 aTGAGGTCAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAGCGGCGCTTG 292 | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 238 ACGAGGTAAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAACGGCGCTTG 297 Query 293 GTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTCTGTCTCTACAATGTCAGATCA 352 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 298 GTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTATGTCTCTACAATGTCAGATCA 357 Query 353 AAACCATTAAAGTCCTTACTTCGTTTCTTCAACGCATAGATCAAGAAGACATGAAGTTCG 412 ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 358 AAACCATTAAAGTTCTTACTTCGTTTCTCCAACGCGTAGATCAAGAAGACATGAAGTTCG 417 Query 413 GAGGTTGAAGATTATCACACCAAGACTGCTCTTCTTTCTTCGATTCCTaaaaacaaaaaa 472 |||||||||||| | |||||||||| | || || |||| || |||| ||||||| Sbjct 418 GAGGTTGAAGATGACCACACCAAGA-T--TC--CT--CTTC--TT---AAAACCAAAAAA 465 Query 473 aaaCGtttttttttttcaaatcttttatttccttttttATAACATGGGATTTTAGCTTTG 532 |||| | ||||||||| ||||| ||| |||| |||||||||||||||||||||| Sbjct 466 AAAC-TCTTTTTTTTT----TCTTTCCTTT--TTTT--ATAACATGGGATTTTAGCTTTG 516 Query 533 ATATATGAGGAAAGAGACTCAACAtttttttcttcgaattttttttttCTTTAGTAGGAG 592 ||||||||||||||||| | ||||| ||| || | | | || | Sbjct 517 ATATATGAGGAAAGAGA-T-----TTTTT--CTT-GAGTAGGAGT-------A-TA--A- 556 Query 593 TATAATCTTTAATTTT-AATGTTCTGATTTATTTATTAAGCCGTTTCACGGTTATGAGAA 651 | |||||||||||||| || |||||| |||||||| | | |||||| |||||||||| Sbjct 557 T-TAATCTTTAATTTTTAA-GTTCTGGTTTATTTA--A-GTCGTTTCGTAGTTATGAGAA 611 Query 652 GTGTTCATTAACGAAAATTAGCATTAAT-TA---A-----TGTAGTTA---TA-TA-A-C 696 ||||||||||||||||||||||| |||| || | |||||||| || || | | Sbjct 612 GTGTTCATTAACGAAAATTAGCACTAATGTAGCTAGGGAGTGTAGTTACACTACTATAAC 671 Query 697 TTATTTTAGTAGGACGCCATATAGTATAGATATTAAATTGGATCACGAGGTTTCACTTGC 756 |||||||||| ||||||||||||| ||| ||||||||||||||||||||| | ||||| Sbjct 672 TTATTTTAGTTGGACGCCATATAG-ATACTTATTAAATTGGATCACGAGGTAGCCCTTGC 730 Query 757 ATATGAGATTTGACATTAATGATATTGAGAAAGTTAATGTTACGTGGCCCATTTTTAAAT 816 || |||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 731 ATTTGAGATTTGACATTAATGATATTGAGAAAGTTAATGTTACGTGGCCCATTTTGAA-T 789 Query 817 CTGGATGAGCTCATTTCAC 835 |||| |||||||||||||| Sbjct 790 CTGGGTGAGCTCATTTCAC 808 > Ahg935176 jgi|Araly1|935176|scaffold_403164.1 Length=397 Score = 614 bits (332), Expect = 4e-175 Identities = 372/391 (95%), Gaps = 3/391 (1%) Strand=Plus/Plus Query 47 TCTCTCTCTTTCTTTCAATGGAAGAAACTCTAGCCACTCCCGACGCCACGAGACGCTCTC 106 ||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 7 TCTCTCTCTCTCCTTCAATGGAAGAAACTTTAGCCACTCCCGACACCACGAGACGCTCTC 66 Query 107 TGTCACCGTCATGCTCAGCCACCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCA 166 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 67 TGTCACCGTCGTGCTCAGCCGCCGTGAAATCACGCGCCGCTGGTTTCGAGCGCAGAACCA 126 Query 167 AACGGAGATTGTCAGAGACTAACGCAAGCGTACGTgaagaccgagaagaagcagaagaag 226 ||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |||| Sbjct 127 AACGGAGATTGTCAGAGACTAACGCAAGCGTACGTGAAGACCGGGAAGAAG-A-A-GAAG 183 Query 227 aagaagaTGAGGTCAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAGCGG 286 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 184 AAGAAGACGAGGTAAAGGAAAAGATTGAGGCGTTGCAGAGGATTATCCCCGGAGGAACGG 243 Query 287 CGCTTGGTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTCTGTCTCTACAATGTC 346 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 244 CGCTTGGTGTGGACGCGCTCTTCGAAGAGACAGCTGGTTACATTATGTCTCTACAATGTC 303 Query 347 AGATCAAAACCATTAAAGTCCTTACTTCGTTTCTTCAACGCATAGATCAAGAAGACATGA 406 ||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| Sbjct 304 AGATCAAAACCATTAAAGTTCTTACTTCGTTTCTCCAACGCGTAGATCAAGAAGACATGA 363 Query 407 AGTTCGGAGGTTGAAGATTATCACACCAAGA 437 |||||||||||||||||| | |||||||||| Sbjct 364 AGTTCGGAGGTTGAAGATGACCACACCAAGA 394 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30879562770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5