BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42880.1
Length=2438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483386 jgi|Araly1|483386|fgenesh2_kg.4__2446__AT2G42880.1 3598 0.0
> Ahg483386 jgi|Araly1|483386|fgenesh2_kg.4__2446__AT2G42880.1
Length=2371
Score = 3598 bits (1948), Expect = 0.0
Identities = 2259/2399 (94%), Gaps = 61/2399 (3%)
Strand=Plus/Plus
Query 50 tctctctctctctGTATCCCTTGTGTGTCGGTGATCAGATCTCGTGCCGACGAAAACGTG 109
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 TCTCTCTCTCTCTCTATCCCTTGTGTGTCGGTGATCAGATCTCGTGCCGACGAAAACGTG 82
Query 110 CGTCT-AAAGCAATGCTGTTCGCACTCTGCTATCTTCAATTCCTCGATTTATCTTGAA-C 167
||| | ||||||||||||||||||||| ||| || |||||| ||||||||||||| || |
Sbjct 83 CGT-TAAAAGCAATGCTGTTCGCACTCAGCTTTCATCAATTGCTCGATTTATCTT-AATC 140
Query 168 TGCGATTGTTTGTTGTTGTTTCGATTTCGTTGGGGGTAATTGGGTGAATTAGAGAGGTGA 227
||| || | |||||| ||||||||| || ||||||||||||||||||||
Sbjct 141 TGC---TG--T-TTGTTGATTCGATTTC------GG----TGGGTGAATTAGAGAGGTGA 184
Query 228 ATGAGAAATTCGCCTGCGATTCTGTCTCTGTCGGTGATCGATTGCCGGAGCAGAACCAGG 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ATGAGAAATTCGCCTGCGATTCTGTCTCTGTCGGTGATCGATTGCCGGAGCAGAACCAGG 244
Query 288 TCGGATTCTAGCTTCGCCATTTGGAGTAGTGGTCGATGGGGCCAATGCGGCTGATCTGAA 347
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 245 TCGGATTCTAGCTTCGCCATTTGGAGTAGTGGTCGTTGGGGCCAATGCGGCTGATCTG-- 302
Query 348 TTTCTATTTCCCTCCCCCCAATTCAGATCGAATTCTAGGGTTCTTCTAATTCCTGGGTTT 407
| ||||| |||||||||||||||| | || ||||||| ||||||
Sbjct 303 -----A------------CAATTTAGATCGAATTCTAGGG-T-TT-TAATTCC-GGGTTT 341
Query 408 TTAGTCTGTGTTT-CAATTGAGTCACGATGCAGCAAGATAATCGCAAAAAGAATAATCTG 466
|| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 342 TT-GTCTGTGTTTCCAATTGAGTCATGATGCAGCAAGATAATCACAAAAAGAATAATCTG 400
Query 467 GAGATGGAGTTCTTTTCTGACTATGGCGATGCCAATAGATTTAAAGTTCAAGAAGTTATT 526
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 401 GAGATGGAGTTCTTCTCTGACTATGGCGATGCCAATAGATTTAAAATTCAAGAAGTTATT 460
Query 527 GGAAAAGGCAGTTATGGAGTTGTTTGCTCAGCTATAGACACTCTTACGGGTGAGAAAGTC 586
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 461 GGAAAAGGCAGTTATGGAGTTGTTTGCTCAGCAATAGATACTCTTACGGGTGAGAAAGTG 520
Query 587 GCGATAAAGAAAATTCATGATATTTTTGAGCATATTTCTGATGCTGCGAGGATTCTACGT 646
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 521 GCGATAAAGAAAATACATGATATTTTTGAGCATATATCTGATGCTGCGAGGATTCTACGT 580
Query 647 GAGATTAAACTTCTTAGACTCCTAAGGCATCCAGATATAGTTGAAATTAAGCACATTATG 706
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 581 GAGATAAAACTGCTTAGACTCTTAAGGCATCCAGATATAGTTGAAATTAAGCACATTATG 640
Query 707 CTTCCTCCTTCACGAAGAGAATTCAAAGATATTTATGTTGTCTTTGAGCTCATGGAATCG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CTTCCTCCTTCACGAAGAGAATTCAAAGATATTTATGTTGTCTTTGAGCTCATGGAATCG 700
Query 767 GATCTTCATCAAGTTATTAAAGCCAATGATGATTTGACTAGAGAGCATTACCAGTTTTTC 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GATCTTCATCAAGTTATTAAAGCCAATGATGATTTGACTAGAGAGCATTACCAGTTTTTC 760
Query 827 CTGTATCAGTTATTGCGTGCACTGAAGTACATTCACACAGCTAATGTCTACCACCGAGAC 886
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CTCTATCAGTTGCTGCGTGCACTGAAGTACATTCACACAGCTAATGTCTACCACCGAGAC 820
Query 887 CTGAAACCAAAGAACATATTGGCAAATGCAAACTGTAAACTTAAGATTTGTGATTTTGGA 946
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CTGAAACCAAAGAACATACTGGCAAATGCAAACTGTAAACTTAAGATTTGTGATTTTGGA 880
Query 947 TTGGCAAGGGTTGCATTCAATGATACCCCCACAACAATCTTCTGGACTGACTATGTTGCT 1006
|||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 881 TTGGCAAGAGTTGCATTCAATGATACGCCCACAACCATCTTCTGGACAGACTACGTTGCT 940
Query 1007 ACCAGATGGTATAGAGCTCCAGAGCTTTGTGGATCTTTTTACTCTAAGTATACACCCGCA 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 ACCAGATGGTATAGAGCTCCAGAGCTTTGTGGATCTTTTTACTCTAAGTATACACCCGCA 1000
Query 1067 ATTGACATCTGGAGTATAGGCTGCATTTTTGCGGAGGTGTTGATGGGTAAACCACTTTTC 1126
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1001 ATTGACATCTGGAGTATAGGCTGCATTTTTGCGGAGGTATTGATGGGAAAACCACTTTTC 1060
Query 1127 CCTGGAAAGAATGTGGTTCACCAGCTGGATCTTATGACTGATCTGCTAGGGACACCTTCC 1186
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1061 CCTGGAAAGAATGTGGTTCATCAGCTGGATCTTATGACTGATCTGCTAGGGACACCTTCC 1120
Query 1187 CTGGACACCATCTCACGGGTGAGGAATGAGAAGGCAAGGAGGTACTTAACAAGCATGAGG 1246
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CTGGACACCATCTCCCGGGTGAGGAATGAGAAGGCAAGGAGGTACTTAACAAGCATGAGG 1180
Query 1247 AAAAAGCCACCCATTCCGTTTGCACAGAAATTCCCAAATGCAGATCCTTTGTCTCTGAAG 1306
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1181 AAAAAGCCACCCATTCCGTTTGCTCAGAAATTCCCCAATGCAGATCCTTTGTCTCTGAAG 1240
Query 1307 TTGTTGGAGAGGCTTCTTGCTTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCACTT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TTGTTGGAGAGGCTTCTTGCTTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCACTT 1300
Query 1367 GCTGATCCATATTTTAAGGGATTGGCAAAAGTGGAAAGGGAGCCTTCATGTCAACCCATC 1426
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1301 GCTGATCCATATTTTAAGGGATTGGCAAAAGTCGAAAGGGAGCCTTCATGTCAACCCATC 1360
Query 1427 ACGAAGATGGAATTTGAGTTCGAGAGAAGAAAGGTCACTAAAGAGGATATAAGAGAGCTA 1486
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1361 ACGAAGATGGAATTTGAATTCGAGAGAAGAAAAGTCACTAAAGAAGATATAAGAGAGCTA 1420
Query 1487 ATTTCTAGGGAGATACTTGAGTACCACCCTCAGCTGCTTAAAGA-TCATATGAACGGGGC 1545
|||||||||||||||||||||||||| |||||||| |||||||| | | |||||||||||
Sbjct 1421 ATTTCTAGGGAGATACTTGAGTACCATCCTCAGCTCCTTAAAGACT-ACATGAACGGGGC 1479
Query 1546 TGATAAAGCCAGTTTTCTCTACCCAAGTGCTGTTGATCAATTTAGAAGACAATTTGCGCA 1605
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TGATAAAGCCAGTTTTCTTTACCCAAGTGCTGTTGATCAATTTAGAAGACAATTTGCGCA 1539
Query 1606 TCTTGAAGAAAACAGTGGTAAAACCGGCCCTGTGGCACCTCTAGAAAGGAAACATGCCTC 1665
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1540 TCTTGAAGAAAACAGTGGTAAAACCGTCCCTGTGGCGCCTCTAGAAAGGAAACATGCCTC 1599
Query 1666 TCTTCCCAGATCAACGGTCATACACTCAACCGCAGTAGCACGAGGAGGACAACCAAAACT 1725
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1600 TCTTCCCAGATCAACAGTCATACACTCAACCGCAGTAGCCCGAGGAGGACAACCAAAGCT 1659
Query 1726 TATGAATAACACAAACACATTGAACCCTGAAACTACTCAAAACATTCCTTTTAATCATGC 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 TATGAATAACACAAACACATTGAACCCTGAAACTACTCAAAACATTCCTTTTAATCATGC 1719
Query 1786 AACAATACAAGCACAACAAAGAAACCTCTCAGCAGCCAAACCAAGCACATTCATGGGCCC 1845
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1720 AACATTACAAGCACAACAAAGAAACCTCTCAGCCGCCAAACCAAGCACATTCATGGGCCC 1779
Query 1846 GGTTGCACCTTTCGACAATGGCAGAATCAGCAGAGATGCATATGACCCGAGATCATTCAT 1905
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1780 GGTCGCGCCTTTCGACAATGGCAGAATCAGCAGAGATGCATACGACCCGAGATCATTCAT 1839
Query 1906 CCGGAGCACTAATCTCCCCTTTTCACAACAATCTGCTGCAACAGTCGCCATGGGAAAGCA 1965
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 1840 CCGGAGCACTAATCTCCCCTTTGCACAACAGTCAGCTGCAACAGTCGCCATGGGAAAGCA 1899
Query 1966 GCAAGAGAGAAGAACAACTATGGAGCCTGAGAAGCAGGCAAGACAAATATCTCAGTATAA 2025
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1900 GCAAGAGAGAAGAACAACTATGGAGCCTGAGAAGCAGACAAGACAAATATCTCAGTATAA 1959
Query 2026 TAGATATGCACCAGATGTAGCCATCAACATAGACAACAACCCGTTTATCATGGCTAGAAC 2085
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 TAGATACGCACCAGATGTAGCCATCAACATAGACAACAACCCGTTTATCATGGCTAGAAC 2019
Query 2086 GGGAATGAACAAAGCCGAAAACATCAGTGACCGGATCATAATCGACACAAATCTGTTACA 2145
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 2020 GGGAATGAACAAAGCCGAAAACATCAGCGACCGGATCATAATCGATACAAATCTTTTACA 2079
Query 2146 GGCAACTGCCGGAATAGGAGTCGCAGCGGCAGCTGCAGCAGCTGCTCCTGGTGGTTCTGC 2205
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2080 AGCAACCGCCGGAATAGGAGTTGCAGCGGCAGCTGCAGTAGCTGCTCCTGGTGGTTCTGC 2139
Query 2206 TCACCGGAAAGTTGGAGCTGTTCGGTACGGTATGTCAAAGATGTACTAGTTCTCCACCTA 2265
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2140 TCACCGGAAAGTTGGAGCTGTTCGGTACGGTATGTCAAAGATGTACTAGT-CTCCAACTA 2198
Query 2266 AGCTGGGCTTTCATCACACAGAACATTGTATGTTTCCATCTTCATGTCATAAAAGAAAAT 2325
||| ||||||| ||||||| |||||| ||||||||| | |||||||||| ||||||||||
Sbjct 2199 AGCGGGGCTTTGATCACACGGAACATCGTATGTTTCAA-CTTCATGTCAAAAAAGAAAAT 2257
Query 2326 TGTCTATGACACAAAACCATATGAGCAAAAAATAttttttttA----TTAATTGT-GATC 2380
||||||||| ||||||||||||||||||||||| |||| | ||||| || ||||
Sbjct 2258 TGTCTATGATACAAAACCATATGAGCAAAAAATGTTTTAAAAAAAAATTAAT-GTTGATC 2316
Query 2381 CATCATTTGTTTGTTTTTTCTATT-CCGACAAATAAATAAATGGATGTTAGA-TTCTGG 2437
|||||||||||| |||| ||||| |||||| |||||||||||||||||| | ||||||
Sbjct 2317 CATCATTTGTTT-TTTT--CTATTTCCGACAGATAAATAAATGGATGTTA-ACTTCTGG 2371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91873670940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5