BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42900.1
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483390 jgi|Araly1|483390|fgenesh2_kg.4__2450__AT2G42900.1 833 0.0
> Ahg483390 jgi|Araly1|483390|fgenesh2_kg.4__2450__AT2G42900.1
Length=905
Score = 833 bits (451), Expect = 0.0
Identities = 547/592 (92%), Gaps = 11/592 (2%)
Strand=Plus/Plus
Query 1 TACAAAACCGTTACACGTCTCTCTCTATGTAGACATCTATCCATGGTTTCAATGACGGAT 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 TACAAAACCGTTACACATCTCTCTCTATGTAGACATCTATCCATGGTTTCAATGGCGGAT 60
Query 61 CAGACTCTTCTTCAACCTTTCCTAGCCAAACCCACCACCAAAGGCTTAGCAACGGAATCG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CAGACTCTTCTACAACCTTTCCTAGCCAAACCCACCACCAAAGGCTTAGCATCGGAATCG 120
Query 121 GATTCAGGTATTATTCTGCGGCTTTTCTCTATACTTCTCGTCGGAGCAATCTCTTTGTGG 180
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 121 GATTCAGGTATTATTCTGCGGCTTTTCTCTGTACTTCTCGTCGGAGAAATCTCTTTGTGG 180
Query 181 GCAAACCATGAGGCTTCAAAAGGCTTCTCCATAAGTATCATCAATGATGCTAAAGATTCT 240
| ||||||||||||||||||||| || || |||||||||||||| || ||||||||||||
Sbjct 181 GTAAACCATGAGGCTTCAAAAGGTTTTTCTATAAGTATCATCAACGAGGCTAAAGATTCT 240
Query 241 CCTTCCGGTAAA-AGATTCGCCCTTTTCTTCGAATCTGATGATACGGCAGTGCGGATATT 299
||||| |||||| | ||||||||||||||| |||||||| | ||| ||||||||||| ||
Sbjct 241 CCTTCTGGTAAACA-ATTCGCCCTTTTCTTTGAATCTGAAGTTACTGCAGTGCGGATTTT 299
Query 300 GCTCGATGCAAGCTTCTTTGTGGAGAGGTTTCTCTACGAGGGTGTTCCTCATCGTCTCCG 359
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GCTCGATACGAGCTTCTTTGTGGAGAGGTTTCTCTATGAGGGTGTTCCTCATCGTCTCCG 359
Query 360 TAAGCCTGTAAACCACGTTACCGTCCAATTCTGTGGAAACAGTAGTGATAGAGTAGATAG 419
|||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 360 GAAGCCTGTAAACCATGTTACCGTCCGATTCTGTGGAAACAGCAGTGATAGAGTAGATAG 419
Query 420 GTTCTCGGTAACTTCAGGTGCAAGTCATGGAGAGTATGTGATCAGATTAAGCCCATCTCT 479
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 420 GTTCTCTGTAACTTCAGGTGCAAGTCATGGAGAGTATGTGATCAGATTAAGCTCATCTTT 479
Query 480 CACGGAAAGAAAAAAGTTTAGCAACGCCGTGGAATCTGCATTGCGACGTTCTATGGTTAG 539
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AATGGAAAGAAGTAAGTTTAGCAACGCCGTGGAATCTGCATTGCGACGTTCTATGGTTAG 539
Query 540 -A-AT-----AT--GGCTATGGGGAGACGAGTCAGGAGCTTCGCCGGAGCTT 582
| || || ||||||||||||||||||| |||||| |||||||||||
Sbjct 540 GATATGGGCCATATGGCTATGGGGAGACGAGTCCGGAGCTCCGCCGGAGCTT 591
Score = 442 bits (239), Expect = 2e-123
Identities = 292/316 (92%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 616 AGCCGAAAACGACGTCACTTTGAAAAGTTTGGTGGGAATTGGAAGGATAAGGA------A 669
||||||||||||||||||||||| | ||| |||||| ||||||||||||||||
Sbjct 592 AGCCGAAAACGACGTCACTTTGAGAGGTTGGGTGGGCATTGGAAGGATAAGGAGTTTGCT 651
Query 670 AAGTCTGTGTATGTGGTTAGCTTGTTGGATTACTGTGAACGACGTAGCG-AGGGTTTCAT 728
|||||||||| |||||||||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 652 AAGTCTGTGTCTGTGGTTAGCTTCTTGGATTACTGTGAACGACGTAGCGAAGGG-TTCAT 710
Query 729 CCGACGGTTGAACCATGGGATGAGACTTAGGTGGGATGATCGGACGGTGGATCTTGCTTC 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 711 CCGACGGTTGAACCATGGGATGAGACTTAGGTGGGATGATCGGACGGTGGATCTTGCGTC 770
Query 789 GAGTGGTGCGTGTGGTTCACGCAAGGATGTGTTGCGTGAGCTTAAGATGGACGACAGTGG 848
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 771 GAGTGGTGCGTGTGGTTCACGCAAGGATGTGTGGCGTGAGCTTAAGATGGACGACAGTGG 830
Query 849 ATTGATAATTGAGAGACGAACATGATATG-TTCTCGTGCTGCCATATTGTAGCACACATG 907
| |||||||||||||||||||||||| || ||||| ||||| | ||||||||||||||||
Sbjct 831 AATGATAATTGAGAGACGAACATGAT-TGGTTCTCATGCTGTCTTATTGTAGCACACATG 889
Query 908 GCTCCACGTCATTATT 923
|||||||||||| |||
Sbjct 890 GCTCCACGTCATCATT 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34310625300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5