BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42910.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483391 jgi|Araly1|483391|fgenesh2_kg.4__2451__AT2G42910.1 1912 0.0
> Ahg483391 jgi|Araly1|483391|fgenesh2_kg.4__2451__AT2G42910.1
Length=1313
Score = 1912 bits (1035), Expect = 0.0
Identities = 1250/1347 (93%), Gaps = 41/1347 (3%)
Strand=Plus/Plus
Query 1 AAGGAATCAAAATTGTCAGCCGAACAACaaaaaaaaCAAGGGCTTTTCAGaaaaataaaa 60
||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||
Sbjct 1 AAGGAATCAAAATTGTCAGCCGAACAA-AAAAAAAAGAA---TTTTTCAGAAAAAT-AAA 55
Query 61 aaCCTTTAAACCC------ttt-ttttGTGTATCCGATTCCGTCGCAAGTACATTCGGAC 113
||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||
Sbjct 56 AACCTTTAAACCCTTTTTTTTTGTTTTGTGTATCCGATTCCGTAGCAAACACATTCGGAC 115
Query 114 TCTTTCACGGCGTCAATGTCTGAGAACGCAGCCAACAACATCATGGAGACCAAGATTTGT 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCTTTCACGGCGTCAATGTCTGAGAACGCAGCCAACAACATCATGGAGACCAAGATTTGT 175
Query 174 ACAGACGCCATCGTGTCTGAATTACAGAAGAAGAAAGTTCATCTCTTTTACTGCTTAGAG 233
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ACCGACGCCATCGTGTCTGAATTACAGAAGAAGAAAGTTCATCTCTTTTACTGCTTAGAG 235
Query 234 TGCGAAGAACTTGCTCGCAACATCGCCGCTGAATCTGATCACATCACTCTCCAATCCATC 293
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 236 TGTGAAGAACTTGCTCGTAACATCGCCGCTGAATCTGATCACATCACTCTTCAATCCATC 295
Query 294 AACTGGAGGAGTTTTGCTGATGGATTCCCGAATCTATTTATCAACAACGCACATGATATC 353
||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 296 AACTGGAGGAGTTTTGCTGATGGATTCCCTAATCTGTTTATTAACAACGCACATGAAATC 355
Query 354 CGAGGCCAGCACGTTGCGTTCCTTGCTTCATTCAGTTCCCCTGCTGTCATCTTTGAGCAG 413
||||| ||||| ||||| |||||||||||||||||||| ||||| || ||||||||||||
Sbjct 356 CGAGGACAGCATGTTGCCTTCCTTGCTTCATTCAGTTCTCCTGCGGTTATCTTTGAGCAG 415
Query 414 ATCTCTGTCATTTACTTGCTCCCTCGATTGTTTGTTGCGTCCTTCACTTTGGTGTTGCCT 473
|||||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||
Sbjct 416 ATCTCTGTCATTTACTTGCTTCCTCGCTTGTTTGTCGCCTCCTTCACTTTAGTGTTGCCT 475
Query 474 TTCTTCCCCACTGGCTCCTTTGAGAGAATGGAAGAGGAAGGAGATGTAGCAACTGCTTTT 533
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTTTTCCCCACTGGCTCCTTTGAGAGAATGGAAGAGGAAGGAGATGTAGCAACTGCTTTT 535
Query 534 ACCATGGCAAGGATTGTCTCTAATATCCCCATTTCACGCGGTGGTCCGACTAGTGTTGTC 593
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 536 ACCATGGCAAGGATTGTCTCTAATATCCCCATTTCACGTGGTGGTCCGACTAGTGTTGTC 595
Query 594 ATCTATGACATTCACGCTTTGCAGGAAAGGTTTTACTTTGCCGATCAGGTTCTTCCTTTG 653
|| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 596 ATATATGACATTCACGCCCTGCAGGAAAGGTTTTACTTTGCTGACCAGGTTCTTCCTTTG 655
Query 654 TTTGAGACTGGAATCCCGTTGTTGACTAAACGCCTTCAACAGCTTCCTGAAACTGAGAAA 713
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 656 TTTGAGACTGGAATCCCGTTGTTGACCAAACGCCTTCAACAGCTTCCCGAAACTGAGAAA 715
Query 714 GTCATAGTTGCATTTCCTGATGATGGAGCCTGGAAGCGTTTCCATAAGCTGTTGGATCAT 773
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 716 GTCATAGTTGCATTTCCAGATGATGGAGCCTGGAAGCGTTTCCACAAGCTGTTGGATCAG 775
Query 774 TATCCCACGGTTGTGTGTACAAAGGTTCGTGAAGGCGATAAGAGAATAGTCAGGCTGAAG 833
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 776 TATCCCACGGTTGTGTGTACAAAGGTTCGTGAAGGCGACAAGAGAATAGTTAGGCTGAAG 835
Query 834 GAAGGAAACCCTGCTGGTTGTCACGTTGTTATCGTGGATGATCTTGTGCAGTCTGGGGGT 893
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 836 GAAGGAAACCCCGCTGGTTGTCACGTTGTTATCGTCGATGATCTTGTTCAGTCTGGGGGT 895
Query 894 ACACTCATTGAATGCCAGAAAGTATTGGCAGCGCATGGAGCTGTGAAGGTGAGTGCTTAT 953
|||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 896 ACACTCATCGAATGCCAGAAAGTATTGGCAGCTCATGGAGCCGCGAAGGTGAGTGCTTAT 955
Query 954 GTAACTCATGGTGTCTTCCCAAAGAGCTCGTGGGAGCGTTTCACCCACAAGAAGAACGGA 1013
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 956 GTAACACATGGTGTCTTCCCAAAGAGCTCGTGGGAGCGTTTCACGCACAAGAACAACGGA 1015
Query 1014 TTAGAAGAAGCGTTTGCTTACTTCTGGATCACGGATTCTTGTCCACAGACGGTTAAGGCC 1073
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTGGAAGAAGCGTTTGCATACTTCTGGATCACGGATTCTTGTCCACAGACGGTTAAGGCC 1075
Query 1074 ATCGGAAACAAGGCTCCTTTCGAAGTCTTGAGCCTCGCTGGATCCATTGCTGATGCTCTG 1133
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1076 ATAGGAAACAAAGCTCCTTTCGAAGTCTTGAGCCTCGCCGGATCCATTGCTGATGCTCTG 1135
Query 1134 CAGATTTGAAGCAGTAGAGATAAAGCCTGGTTCTTTGCTCGTTTTGGACTTTTGGTGGTT 1193
||||||||||||| ||||||||||||||||||||||||| | | |||||||
Sbjct 1136 CAGATTTGAAGCAATAGAGATAAAGCCTGGTTCTTTGCT-G----G---TTTTGGT---- 1183
Query 1194 TTATACTCTTAAGAGATGTGCTTTGGATGATCATTTATGAAATAATCATATCACTTTTGC 1253
| |||||||||||| | | | ||| |||||||||||| |||||||||||
Sbjct 1184 --A--CTCTTAAGAGAT---C-----A--A--ATT-ATGAAATAATCACATCACTTTTGC 1226
Query 1254 TGAAATAACTAGACAGATTGTTGAAACCTTGTACTCTGTTCTTGTTGATTGATCTTCTTT 1313
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGAAATGACTAGACAGATTGTTGAAACCTTGTACTCTGTTCTTGTTGATTGATCTTCTTT 1286
Query 1314 TGCAATGAATTGAATCGTTAAGTTCAG 1340
|||||||||||||||||||||||||||
Sbjct 1287 TGCAATGAATTGAATCGTTAAGTTCAG 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5