BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42940.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483394 jgi|Araly1|483394|fgenesh2_kg.4__2454__AT2G42940.1 1794 0.0
> Ahg483394 jgi|Araly1|483394|fgenesh2_kg.4__2454__AT2G42940.1
Length=1175
Score = 1794 bits (971), Expect = 0.0
Identities = 1131/1201 (94%), Gaps = 39/1201 (3%)
Strand=Plus/Plus
Query 12 TTGTTAACTATTAATCACAATTTTTGGTGACAACTTAACCATCTCCTACTCCTCACAATC 71
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TTGTTAACTATTAATCACAA-TTTTGGTGACAACTTAACCATCTCCTACTCTTCACAATC 59
Query 72 ATTCTTTTGGTGTCTCTACCATTTAATAATTCACCAAAATCTCCTTACTTAAACTCACAA 131
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 ATTCTTTTGGTGTCTCTACCATTTAATAATTCACCAAAACCTCCTTACTTAAACTCACAA 119
Query 132 ACTCCTCACAAATTTTCTGAATCTTTCAGTTGAACATATAACAACATTCATAACAATGGC 191
|||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 120 ACTCCTCACAAATTTTCTGAATCTTTCACTTGAACATAT-A-AACATTCATAACAATGGC 177
Query 192 TGGAGGTACAGCTCTAACTCCAACCTCTGTAGGATCCAAGTCTGTTCCAATGAGGAACCA 251
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 178 TGGAGGCACAGCTCTAACCCCAACCTCTGTAGGATCCAAGTCAGTTCCAATGAGGAACCA 237
Query 252 TGAAGCAACAGAGAGAGG------CAAC-AC--CAACAACAACCTGAGAGCATTACCCAA 302
||||||| |||||||||| |||| || |||||||||||||| ||||||||||||
Sbjct 238 TGAAGCAGCAGAGAGAGGCAATAACAACAACAACAACAACAACCTGAAAGCATTACCCAA 297
Query 303 AGCCGTCCAACCGGTTTCATCAATCGAAGGAGAGATGGCTAAGAGGCCACGTGGCAGACC 362
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGCTGTCCAACCGGTTTCATCAATCGAAGGAGAGATGGCTAAGAGGCCACGTGGCAGACC 357
Query 363 CGCTGGCTCCAAGAACAAACCCAAACCACCAATCATTGTGACTCACGACAGTCCAAATTC 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 358 CGCTGGCTCCAAGAACAAACCCAAACCACCAATCATTGTGACTCACGACAGTCCCAATTC 417
Query 423 CCTCAGAGCTAACGCCGTTGAGATCAGCTCAGGTTGTGACATCTGTGAGACTTTATCGGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 418 CCTCAGAGCTAACGCCGTTGAGATCAGCTCAGGTTGTGACATCTGTGAGACTTTATCCGA 477
Query 483 TTTTGCAAGAAGGAAACAGAGAGGTCTCTGCATTCTCAGTGCCAATGGTTGTGTCACCAA 542
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 478 TTTCGCAAGAAGGAAACAGAGAGGTCTCTGCATACTCAGTGCCAATGGTTGTGTCACCAA 537
Query 543 TGTGACATTAAGGCAACCAGCTTCATCAGGAGCAATTGTCACATTACACGGACGTTACGA 602
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 538 TGTGACATTAAGGCAACCAGCTTCTTCAGGAGCAATTGTGACATTACACGGACGTTACGA 597
Query 603 GATCCTCTCATTGCTTGGATCAATCTTGCCTCCACCAGCACCACTTGGAATAACTGGTCT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATCCTCTCATTGCTTGGATCAATCTTGCCTCCACCAGCACCACTTGGAATAACTGGTCT 657
Query 663 GACCATTTACTTAGCCGGACCTCAAGGACAGGTTGTTGGTGGAGGAGTGGTTGGTGGGCT 722
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 658 GACCATTTACTTAGCCGGACCTCAAGGACAAGTTGTTGGTGGTGGAGTGGTTGGTGGGCT 717
Query 723 AATCGCATCTGGTCCTGTTGTTCTCATGGCTGCATCTTTCATGAATGCTGTTTTTGATCG 782
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AATCGCGTCTGGTCCTGTTGTTCTCATGGCTGCATCTTTCATGAATGCTGTTTTTGATCG 777
Query 783 TCTTCCTATGGATGATGATGAAGCTGCCTCTATGCAGAACCAGCAGTACTACCAGAATGG 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCTTCCTATGGATGATGATGAAGCTGCCTCTATGCAGAACCAGCAGTACTACCAGAATGG 837
Query 843 AAGATCCCGTCCTTTAGATGACATTCATGGACTGCCTCAAAATCTGCTCACTAATGGAAA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGATCCCGTCCTTTAGATGACATTCATGGACTGCCTCAAAATCTGCTCACTAATGGAAA 897
Query 903 CTCGGCTTCTGATATCTACTCTTGGGGGCCTGCGCAGCGTGTCATGTCGAAACCTTAATA 962
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 898 CTCGGCTTCTGATATCTACTCTTGGGGGCCTGCGCAGCGTGCCATGTCGAAACCTTAATA 957
Query 963 CTACTGCTCTAATCTCCACGTTTCATCATATCAAATGCCTTAATCTT---ATTATCTCAT 1019
||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||
Sbjct 958 CTACT-CTCTAATCTCCACGTTTCATCATATCAAGTGCCTTAGTCTTCTTATTATCTAAT 1016
Query 1020 TTACCTTGGAATCAAAGATAAATGTGTCTGTAGGTTGAGAGAGAACCGTAAGTCTGGTTA 1079
|||||||| |||||||||| ||||| ||||||||| |||||||| || ||| |
Sbjct 1017 TTACCTTGAAATCAAAGATCAATGTTTCTGTAGGT--AGAGAGAA----AA--CTG---A 1065
Query 1080 AGAAACTGAAGCTTATCTCCCTTTGTAGTTTGTACCTGCAACAGTaaaaagaaaaaactg 1139
|| || | |||| ||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 1066 AG---CT-----T-ATCTTCCTCTGTAGTTTGTACCTGCAACAGTAAAATGAAGAAACTG 1116
Query 1140 a-aaaaagcaaaagtaaaTGATTATGAATTTTAAGCACAATCCTCTAATTTAATACGAAA 1198
| ||||| || |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AGAAAAA-CACAAGTAA-TGTTTATGAATTTTAAGCACAATCCTCTAATTTAATACGAAA 1174
Query 1199 A 1199
|
Sbjct 1175 A 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5