BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42950.1
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935186 jgi|Araly1|935186|scaffold_403174.1 1652 0.0
> Ahg935186 jgi|Araly1|935186|scaffold_403174.1
Length=1445
Score = 1652 bits (894), Expect = 0.0
Identities = 985/1030 (96%), Gaps = 2/1030 (0%)
Strand=Plus/Plus
Query 739 GTGCCTGTCAGAGTTGCTGGTGGGTTGCTGTTTGAGCTGTTGGGACAATCAGCGGGTGAT 798
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 417 GTGCCTGTCAGAGTTGCTGGTGGGCTGCTGTTTGAGCTGTTGGGACAATCAGCGGGTGAT 476
Query 799 CCTTTCATCCAAGAAGATGACATACCTATTGTCTTAAGGTCTTGGCAAGCACAGAATTTT 858
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 477 CCTTTTATCCAAGAAGATGACATACCTATTGTCTTAAGGTCATGGCAAGCACAGAATTTT 536
Query 859 CTGGTGACTGCATTGCACGTTAAAGGCTTTGCCTTGAACATTAGTGTCTTAGGTATTACT 918
|||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||
Sbjct 537 CTGGTGACTGCATTGCACGTCAAAGGCTTTTCCTTTAACATTAGTGTGTTAGGTATTACA 596
Query 919 GAAGTCCAGGAAATGCTTATTGCTGGTGGAGCCTGCATTCCGAGAACCGTTCATGAACTA 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAAGTCCAGGAAATGCTTATTGCTGGTGGAGCCTGCATTCCGAGAACCGTTCATGAACTA 656
Query 979 ATAGCACATCTTGCATGCCGCCTTGCACGCTGGGATGATAGGCTATTCCGGAAGTATATA 1038
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 ATAGCACATCTTGCTTGCCGCCTTGCACGCTGGGATGATAGGCTATTCCGGAAGTATGTA 716
Query 1039 TTTGGTGCAGCTGATGAAGTTGAGTTGATGTTTATGAATAAGAGACTGTACGAGGACCCA 1098
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 717 TTTGGTGCAGCTGATGAAGTTGAGTTGATGTTTATGAACAAGAGGCTGTACGAGGATTTA 776
Query 1099 AATCTGTTCACTACAATCTTGAATCAAGAGATCAGAAGGCTGTCGACCCAGGTTATACGG 1158
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 777 AATCTGTTCACTACAATCTTGAATCAAGAGATCAGAAGGCTCTCGACCCAGGTTATACGG 836
Query 1159 GTGAAATGGTCGCTTCATGCTAGAGAAGAGATTGTGTTCGAGCTTCTTCAGCAACTAAAA 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTGAAATGGTCGCTTCATGCTAGAGAAGAGATTGTGTTCGAGCTTCTTCAGCAACTAAAA 896
Query 1219 GGCAATAGAACAAAAGACTTGCTAGAAGGAATAAAAAAGAGCACCCGCGATATGATCAAT 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGCAATAGAACAAAAGACTTGCTAGAAGGAATAAAAAAGAGCACCCGCGATATGATCAAT 956
Query 1279 GAACAAGAGGCCGTGCGAGGTCGGTTATTCACTATCCAAGATGTCATGCAAAACACGGTT 1338
|| ||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 GAGCAAGAAGCCGTTCGTGGTCGGTTATTCACTATCCAAGACGTCATGCAAAACACGGTT 1016
Query 1339 CGAGCATGGTTACAGGACCAGAGCCTCACGGTCACACATAACCTAGGAATCTTTGGAGGA 1398
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1017 CGAGCATGGTTACAGGACCGGAGCCTCACGGTCACACACAACCTAGGAATCTTTGGAGGA 1076
Query 1399 GTCGGTCTTTTGATTACAATAGTGACCGGTCTATTTGGAATCAACGTAGATGGGATACCA 1458
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GTCGGTCTTTTGCTTACAATAGTGACCGGTCTATTTGGAATCAACGTAGATGGGATACCT 1136
Query 1459 GGTGCCAAAGATTTTCCACAAGCCTTTGCGCTTTTCTCAGTCG-TTCTGTTCGTCTCAGG 1517
|| || |||||||||||||| ||||||| ||||||||||| || |||| ||| |||| ||
Sbjct 1137 GGAGCTAAAGATTTTCCACACGCCTTTGTGCTTTTCTCAG-CGGTTCTCTTCTTCTCTGG 1195
Query 1518 TTTGGTGCTAGTGGTCGCTGGTTTAATCTACCTTGGACTCAAGGAGCCAGTGGCAGAAGA 1577
||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1196 TTTGGTGTTAGTGGTTGCTGCTTTACTCTACCTTGGACTCAAGGAGCCAGTGGCAGAAGA 1255
Query 1578 GAATGTGGAGACTAGGAAACTAGAGCTTGACGAAATGGTGAAGAAGTTTCAACAAGAAGC 1637
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1256 GAATGTGGAGACTAGGAAATTAGAGCTTGACGAAATGGTAAAGAAGTTTCAACGAGAAGC 1315
Query 1638 TGAGTCTCATGCTCAGGTCTGCAAAAAAGTTCCTCAGAACATAGAACGTACGACTAGTAG 1697
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1316 TGAGTCTCACGCTCAGGTCTGCAAAAAAGTTCCTCAGAACAGAGAACGTACGACTAGTAG 1375
Query 1698 AAGTAGAATGATAGTCCATGATCCGAATGGTTACGTTCTCTTGGAATGAAATCAATCCGG 1757
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TAGTAGAATGATAGTCCATGACCCGAATGGTTACGTTCTCTTGGAATGAAATCAATCCGG 1435
Query 1758 TTTATGATTG 1767
||||||||||
Sbjct 1436 TTTATGATTG 1445
Score = 497 bits (269), Expect = 9e-140
Identities = 373/420 (89%), Gaps = 19/420 (5%)
Strand=Plus/Plus
Query 235 TGAAGCATGAATGCGAATCACAAGAACGGGAATCCAGGTTACCATAATCTCTGGACCAAT 294
||||| ||||||||||||||| ||| | | | ||||| ||||||||||||||||||
Sbjct 15 TGAAGTATGAATGCGAATCAC---AAC--G-A--C-GGTTATCATAATCTCTGGACCAAT 65
Query 295 GGACTTATCTGTGCTTTCGAGTTTTGTCAAGGTCGTCGTAAGAATAACACAAGTGTCCAT 354
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 66 GGACTTATCTGTGCTTTCGAGTTTTGTCAAGGTCGTCGTAAGAACACCACAAGTGTTCAC 125
Query 355 GGAGATTCGTCTCTCAGAATAA-AGAAACAGGAAT-GTGAAACAGATCAATTTGGTACTG 412
||||||||| |||| | || | || |||| ||||||| |||||||| |||
Sbjct 126 GGAGATTCG----TCAG-AGAACTCACTCA-GAATAAAGAAACAG--GAATTTGGTGCTG 177
Query 413 GTGAAGACGAAGAACATTCTAGGAGTTATTGGCGAGGAATTGGATGGGATAGGATCTCTG 472
||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTGAAGAAGAAGAACACTCGCGGAGTTATTGGCGAGGAATTGGATGGGATAGGATCTCTG 237
Query 473 AGCTTGTTCAGACTGTTCAAGTTGATAATAATTGGGATTTGCGAAAGATTGACTTAGATG 532
|||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 238 AGCTTGTTCAGACTGTGCAAGTTGATAATACCTGGGAATTGCGAAATATTGACTTAGATG 297
Query 533 AGGATGAAGCCACTGTTGCTGAGCTTGCTGCTCCTTACTGGGAACGACCACTTGCTGGTC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 AGGATGAAGCCACTGTTGCTGAGCTTGCTGCTCCTTACTGGGAACGACCACTTGCAGGTC 357
Query 593 CAACTTGGTGGTGTCATCTTGATGCTACCCATCATGGTATTGCCTCGTGGTTACGTAATG 652
||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 358 CAACTTGGTGGTGTCATGTTGATGCTAGCCATCAAGGTATTGCCTCGTGGTTACGTAATG 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68562441000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5