BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42980.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935189 jgi|Araly1|935189|scaffold_403177.1 2449 0.0
Ahg486375 jgi|Araly1|486375|fgenesh2_kg.5__2367__AT3G59080.1 992 0.0
> Ahg935189 jgi|Araly1|935189|scaffold_403177.1
Length=1630
Score = 2449 bits (1326), Expect = 0.0
Identities = 1510/1597 (95%), Gaps = 20/1597 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACCAAACTCAGTATATTTCTTCTTGGCCTGATTTTGTTCTCTGTCTCACCATTT 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 21 ATGTCGACCAAACTCAGTATA---ATTCTTGGCCTGATTTTGTTCTCTGTCTCACCATTT 77
Query 61 TCCGGAGACTGTAGAACTCTTT-CAGGGAAACATGAGCATTACTCTTCATCCCTTAACAT 119
||||| |||||||||||||||| || |||||||||| ||| |||||||||||||| ||
Sbjct 78 TCCGGCGACTGTAGAACTCTTTCCA-GGAAACATGATCATAACTCTTCATCCCTTTAC-G 135
Query 120 G-TTTAATTCCCAAGATACGATGCGTTTCAGTTCTGCT-TCTTCTTCAACAAGCAACGAT 177
| ||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||||
Sbjct 136 GCTTTAATTCCCAAGATACGATGCGTTTCGGTTCTG-TCTCTTCTTCCACAAGCAACGAT 194
Query 178 TGCGGTTTCTCCTCCAAGGAACATGATCCTTCCAAGGAACATACCAGAGAATCGGTGAAG 237
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 195 TGTGGTTTCTCCTCCAAGGAACATGATCCTGCCAAGGAACATACCAGAGAATCGGTGAAG 254
Query 238 C--C--TCAA---TCA-AG-GATTAAACAAGAAACAAAGAGAACAACACATTCAGTTGTT 288
| | | || || | |||||||||||||||||||||||||||||| |||||||||
Sbjct 255 CTTCATTTAAGGCGCAGGGAGATTAAACAAGAAACAAAGAGAACAACACACTCAGTTGTT 314
Query 289 GATCTTCAAATCCAAGACCTCACAAGAATTAAGACGCTTCATGCTCGGTTCAACAAATCG 348
|||||||||||||||||||||||||||||| |||||||||| || ||||| || ||||||
Sbjct 315 GATCTTCAAATCCAAGACCTCACAAGAATTCAGACGCTTCACGCACGGTTTAAGAAATCG 374
Query 349 AAGAAACAGAAAAACGAGAAGGTTAGGAAGAAGATTACCTCAGATATTTCTTTGGTGGGA 408
|||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 375 AAGAAACAGAGAAACGAGAAGGTTAAGAAGAAGATTACTTCAGATATTTCTTTGGTGGGA 434
Query 409 GCTCCAGAGGTTTCACCGGGGAAGCTGATAGCAACACTTGAGTCTGGTATGACGCTCGGT 468
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 435 GCTCCAGAGGCTTCACCGGGGAAGCTGATAGCAACACTTGAGTCTGGTATGACTCTCGGT 494
Query 469 TCTGGTGAATACTTCATGGACGTGCTTGTGGGCACACCACCAAAACACTTCTCATTGATT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TCTGGTGAATACTTCATGGACGTGCTTGTGGGCACACCACCAAAACACTTCTCATTGATT 554
Query 529 CTTGACACAGGGAGTGACTTAAACTGGCTCCAATGCCTTCCTTGCTACGACTGTTTCCAT 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 CTTGACACAGGGAGTGACTTAAACTGGCTCCAATGCCTTCCTTGCTACGACTGTTTCCAC 614
Query 589 CAAAACGGTAT-GTTTTATGATCCAAAAACGTCCGCTTCATTCAAGAACATAACATGCAA 647
||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 615 CAAAACGA-AGCGTTTTATGACCCGAAAACGTCCGCTTCATTCAAGAACATAACATGCAA 673
Query 648 TGACCCTAGATGCAGCCTTATCTCATCACCCGATCCTCCAGTACAGTGCGAATCAGATAA 707
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 674 TGACCCTAGATGCAGCCTCATCTCATCACCCGAGCCTCCAGTACAGTGCAAATCAGATAA 733
Query 708 CCAATCGTGCCCTTATTTCTACTGGTATGGAGACAGGTCGAACACAACTGGAGATTTCGC 767
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 734 CCAATCGTGCCCTTATTTCTACTGGTATGGAGACAGATCGAACACAACTGGAGATTTCGC 793
Query 768 GGTTGAGACTTTCACCGTTAATCTCACGACCACTGAGGGAGGAAGCTCAGAGTACAAGGT 827
||||||||| |||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 794 GGTTGAGACCTTCACCGTTAATCTCACGACCACTGAGGGAAGAAGTTCAGAGTATAAGGT 853
Query 828 GGGAAATATGATGTTTGGGTGTGGCCATTGGAACCGAGGTCTCTTCAGTGGTGCTTCAGG 887
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 854 GGAAAATATGATGTTTGGGTGTGGTCATTGGAACCGAGGTCTCTTCAGTGGTGCTTCAGG 913
Query 888 TCTGCTTGGGTTAGGAAGAGGACCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGG 947
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TCTGCTTGGGTTAGGGAGAGGACCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGG 973
Query 948 CCATTCCTTTTCCTACTGTCTTGTCGATAGAAACAGCAACACCAATGTAAGCAGCAAGTT 1007
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 974 CCATTCCTTTTCCTATTGTCTTGTCGATAGAAACAGCGACACCAATGTAAGCAGCAAGTT 1033
Query 1008 GATATTTGGAGAAGACAAAGATTTGCTGAACCACACAAATCTGAACTTCACTTCTTTTGT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GATATTTGGAGAAGACAAAGATTTGCTGAACCACACAAATCTGAACTTCACTTCTTTTGT 1093
Query 1068 GAACGGGAAGGAGAATTCAGTGGAGACATTTTACTATATACAGATCAAATCCATTCTAGT 1127
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1094 GAACGGGAAGGAGAATTCTGTGGAGACGTTTTACTATATACAGATCAAATCCATTCTAGT 1153
Query 1128 CGGCGGCAAAGCTCTAGACATACCTGAAGAAACATGGAATATCTCATCAGATGGTGATGG 1187
||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1154 CGGCGGCGAAGCTCTGGACATACCTGAAGAAACATGGAATATCTCACCAGATGGTGCTGG 1213
Query 1188 TGGAACCATCATTGATTCTGGTACAACCTTAAGCTATTTCGCAGAACCTGCATATGAGAT 1247
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 1214 TGGAACCATCATTGATTCCGGGACAACCTTAAGCTATTTCGCAGACCCTGCATATGAGAT 1273
Query 1248 CATCAAAAACAAGTTTGCAGAGAAAATGAAAGAAAACTACCCAATATTTAGAGATTTCCC 1307
||| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 1274 CATAAAAAACAAGTTTGCAGAGAAAATGAAAGAGAACTACCTGGTGTTTAGAGATTTCCC 1333
Query 1308 GGTCCTTGATCCTTGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCACCTACCTGA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1334 GGTCCTTGATCCTTGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCATCTGCCGGA 1393
Query 1368 GCTCGGGATTGCATTTGTAGACGGCACAGTTTGGAATTTCCCTGCTGAGAACTCCTTCAT 1427
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1394 GCTCGGGATTGCATTTGCAGACGGCGCAGTTTGGAATTTCCCTGCTGAGAACTCCTTCAT 1453
Query 1428 TTGGTTGAGCGAGGATTTGGTTTGCTTGGCAATTCTAGGAACTCCAAAATCTACCTTCTC 1487
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1454 TTGGTTGAGTGAGGATTTGGTTTGCTTGGCAATTCTAGGAACTCCTAAATCTACATTCTC 1513
Query 1488 GATCATCGGAAACTACCAGCAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAG 1547
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 GATCATCGGAAACTACCAACAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAG 1573
Query 1548 GCTAGGGTTCACACCCACAAAGTGTGCGGACATATAA 1584
||||||||| |||||||||||||||||||||||||||
Sbjct 1574 GCTAGGGTTTACACCCACAAAGTGTGCGGACATATAA 1610
> Ahg486375 jgi|Araly1|486375|fgenesh2_kg.5__2367__AT3G59080.1
Length=1978
Score = 992 bits (537), Expect = 0.0
Identities = 964/1166 (83%), Gaps = 46/1166 (4%)
Strand=Plus/Plus
Query 439 GCAACACTTGAGTCTGGTATGACGCTCGGTTCTGGTGAATACTTCATGGACGTGCTT-GT 497
||||| ||||||||||||||||| || |||||||| || ||||||||||||||| || ||
Sbjct 657 GCAACGCTTGAGTCTGGTATGACTCTTGGTTCTGGCGAGTACTTCATGGACGTG-TTGGT 715
Query 498 GGGCACACCACCAAAACACTTCTCATTGATTCTTGACACAGGGAGTGACTTAAACTGGCT 557
|| | ||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
Sbjct 716 TGGTTCGCCACCAAAACACTTCTCCTTGATTCTTGATACAGGGAGTGACCTAAACTGGAT 775
Query 558 CCAATGCCTT-CCTTGCTACGACTGTTTCCATCAAAACGGTATGTTTTATGATCCAAAAA 616
||||| ||| |||||| ||||||||||||| ||||||||| ||||||||| || | |
Sbjct 776 TCAATG-CTTGCCTTGCCACGACTGTTTCCAGCAAAACGGTGCGTTTTATGACCCTACAG 834
Query 617 CGTCCGCTTCATT-CAAGAACATAACATGCAATGACCCTAGATGCAGCCTTA-TCTCATC 674
| || ||||| || |||||||||||| ||||||||||| ||||||| | || ||||| |
Sbjct 835 CCTCTGCTTC-TTACAAGAACATAACTTGCAATGACCCAAGATGCAATC-TAGTCTCACC 892
Query 675 ACCCGATCCTCCAGTA-CAGTGCGAATCAGATAACCAATCGTGCCCTTATTTCTACTGGT 733
||| || |||||| | | ||| |||||||||||||||| |||||||| | ||||||||
Sbjct 893 ACCTGACCCTCCA-AAGCCCTGCAAATCAGATAACCAATCATGCCCTTACTACTACTGGT 951
Query 734 ATGGAGACAGGTCGAACACAACTGGAGATTTCGCGGTTGAGACTTTCACCGTTAATCTCA 793
|||| || || || ||||| || |||||||| || || ||||||||||| ||||||||||
Sbjct 952 ATGGGGATAGCTCCAACACTACCGGAGATTTTGCAGTCGAGACTTTCACGGTTAATCTCA 1011
Query 794 CGACCACTGAG-GGAGGAAGCTC--AG-AGTACAAGGTGGGAAATATGATGTTTGGGTGT 849
| | || || ||||| ||||| || ||| || || | ||| |||||||| || |||
Sbjct 1012 CTA-CA---AGTGGAGGGAGCTCGGAGTTGTATAATGTCGAAAACATGATGTTCGGTTGT 1067
Query 850 GGCCATTGGAACCGAGGTCTCTT-CAGTGGTGCTTCAGGTC-TGCTTGGGTTAGGAAGAG 907
|| ||||||||| |||||||||| || ||||||| |||| | ||||||||||||||||||
Sbjct 1068 GGTCATTGGAACAGAGGTCTCTTCCA-TGGTGCTGCAGG-CTTGCTTGGGTTAGGAAGAG 1125
Query 908 GACCTCTTTCGTTTTCTTCTCAGCTTCAGTCTCTCTATGGCCATTCCTTTTCCTACTGTC 967
| || ||||||||||| ||||||||||||||||| ||||| |||||||| || || || |
Sbjct 1126 GCCCGCTTTCGTTTTCCTCTCAGCTTCAGTCTCTTTATGGTCATTCCTTCTCATATTGCC 1185
Query 968 TTGTCGATAGAAACAGCAACACCAATGTAAGCAGCAAGTTGATATTTGGAGAAGACAAAG 1027
|||| |||||||| ||| | |||||||| || ||||| ||||| ||||| |||||||| |
Sbjct 1186 TTGTTGATAGAAATAGCGATACCAATGTTAGTAGCAAATTGATTTTTGGGGAAGACAAGG 1245
Query 1028 ATTTGCTGAACCA-CACAAATCTGAACTTCACTTCTTTTGTGAAC-GGGAAGGAGAA-TT 1084
||||| ||| ||| | | ||||||||||||||||||||||| | ||||| ||||| |
Sbjct 1246 ATTTGTTGAGCCATC-CGAATCTGAACTTCACTTCTTTTGT-CGCTGGGAAAGAGAACCT 1303
Query 1085 CAGTGGAGACATTTTACTATATACAGATCAAATCCATTCTAGTCGGCGGCA-AAGCT-CT 1142
| || || ||||||||||| ||||||||||||||||| ||||| |||| | ||| | ||
Sbjct 1304 C-GTCGACACATTTTACTACGTACAGATCAAATCCATTATAGTC-GCGGGAGAAG-TACT 1360
Query 1143 AGACATACCTGAAGAAACATGGAATATCTCATCAGATGGTGATGGTGGAACCATCATTGA 1202
| | |||||||||||||||||||||||||||||| |||| | ||| || || ||||| ||
Sbjct 1361 AAAGATACCTGAAGAAACATGGAATATCTCATCAAATGGAGCTGGAGGTACAATCATCGA 1420
Query 1203 TTCTGGTACAACCTTAAGCTATTTCGCAGAACCTGCATATGAGAT-CATCAAAAACAAGT 1261
||| |||||||||||||| |||||||| |||||||||||||| || |||||| ||||||
Sbjct 1421 TTCGGGTACAACCTTAAGTTATTTCGCGGAACCTGCATATGA-ATTCATCAAGAACAAGA 1479
Query 1262 TTGCAGAGAAAATGAAAGAAAACTACCCAATATT-TAGAGATTTCCCGGTCCTTGATCCT 1320
| ||||||||| ||||| || ||||| | || |||||||||||| |||| ||||||
Sbjct 1480 TAGCAGAGAAAGCGAAAGGGAAGTACCCGGT-TTATAGAGATTTCCCAATCCTAGATCCT 1538
Query 1321 TGCTTCAATGTATCTGGCATAGAGGAGAACAACATCCACCTACCTGAGCTCGGGATTGCA 1380
|| ||||| || |||||||| || | | || || | || || ||||| ||||||||
Sbjct 1539 TGTTTCAACGTCTCTGGCATCGAT-A-A-CAT--TC-AGCTGCCAGAGCTTGGGATTGCT 1592
Query 1381 TTTGTAGACGGCACAGTTTGGAATTTCCCTGCTGAGAACTCCTTCATTTGGTTGAGCGAG 1440
|||| ||| ||| | |||||||| ||||| | ||||| || ||||| ||||||| |||
Sbjct 1593 TTTGCAGATGGCGCGGTTTGGAACTTCCCAACAGAGAATTCTTTCATATGGTTGAATGAG 1652
Query 1441 GATTTGGTTTGCTTGGCAATTCTAGGAACTCCAAAATCTA-CCTTCTCGATCATCGGAAA 1499
||||||||||||||||||||||| |||||||| ||||| | |||| || ||||| |||||
Sbjct 1653 GATTTGGTTTGCTTGGCAATTCTTGGAACTCCCAAATC-AGCCTTTTCAATCATTGGAAA 1711
Query 1500 CTACCAGCAACAGAATTTCCATATACTCTATGATACAAAGAGGTCTAGGCTAGGGT-TCA 1558
||||||||| |||||||| |||||||| ||||||||||||||||| ||||| |||| |
Sbjct 1712 CTACCAGCAGCAGAATTTTCATATACTATATGATACAAAGAGGTCCAGGCTCGGGTATG- 1770
Query 1559 CACCCACAAAGTGTGCGGACATATAA 1584
|||| ||||||||||| || ||||||
Sbjct 1771 CACCTACAAAGTGTGCTGATATATAA 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5