BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G42990.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935190 jgi|Araly1|935190|scaffold_403178.1 1722 0.0
> Ahg935190 jgi|Araly1|935190|scaffold_403178.1
Length=1094
Score = 1722 bits (932), Expect = 0.0
Identities = 1041/1095 (95%), Gaps = 2/1095 (0%)
Strand=Plus/Plus
Query 6 ATGCTAAACAAGTTGTTAGCATGGCAACACATTATTTGTCACCATCAATATTATGCATTA 65
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTAAACAAATTGTTGGCATGGCAACACATTATTTGTCACCATCAATATTATGCATTA 60
Query 66 TTTTGACCACTCTTGTCTCCATCGCCGGAGCAAAAATCCCGGCGATTATAGTCTTCGGTG 125
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTTTGATCACTCTTGTCTCCATCGCCGGAGCAAAAGTCCCGGCGATTATAGTCTTCGGTG 120
Query 126 ACTCTTCCGTAGATTCCGGCAATAATAACTTCATATCAACAATGGCCAGAGCCAATTTTG 185
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 121 ACTCTTCCGTAGATTCCGGCAATAACAACTTCATATCAACAATGGCCAGAGCCAATTTCG 180
Query 186 AGCCTTACGGTCGTGACTTCCCTGGTGGTCGCGCCACCGGACGCTTTTGTAACGGCCGTC 245
||||||| |||||||||||||| || || ||||| ||||| || |||||||| |||||||
Sbjct 181 AGCCTTATGGTCGTGACTTCCCGGGCGGCCGCGCAACCGGCCGTTTTTGTAATGGCCGTC 240
Query 246 TCTCCTCCGATTTCACTTCCGAGGCTTATGGCCTTAAACCGACCGTGCCAGCCTACCTAG 305
||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 241 TCTCCTCTGATTTCACTTCCGAGGCTTATGGCCTTAAACCGACCATACCAGCCTACCTTG 300
Query 306 ATCCGTCCTATAATATATCTGATTTTGCTACCGGAGTTTGTTTTGCCTCCGCCGGCACCG 365
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 301 ATCCGTCCTATAATATCTCTGATTTTGCTACCGGAGTTTGCTTTGCCTCCGCCGGCACTG 360
Query 366 GTTATGATAATTCCACAGCCGATGTGCTTGGCGTGATTCCGTTATGGAAAGAGGTCGAGT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTATGATAATTCCACAGCCGATGTGCTTGGCGTGATTCCGTTATGGAAAGAGGTCGAGT 420
Query 426 ACTTCAAGGAATACCAAAGCAACCTTTCCGCCTATCTCGGCCATCGGAGAGCTGCCAAAA 485
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 ACTTCAAGGAATACCAAGGTAACCTTTACGCCTATCTCGGCCATCGGAGAGCTGCCAAAA 480
Query 486 TCATCAGAGAATCTCTGTACATAGTAAGCATAGGCACCAACGATTTCCTTGAGAACTACT 545
|||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||
Sbjct 481 TCATCAGAGAATCTCTGTACTTAGTCAGCATAGGAACCAATGATTTCCTTGAGAACTACT 540
Query 546 ACACATTACCGGACAGGAGATCTCAATTCAGCATCAGTCAGTACCAAGACTTCCTGGTCG 605
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 ACACATTACCGGACAGGAGATCTCAATTCAGCATCAGTCAGTACCAAGACTTCCTGATCG 600
Query 606 AGATTGCTGAGGTGTTCTTAAAGGA-CATTTACAGACTTGGAGCTCGGAAAATGTCTTTC 664
| || || ||||||||||| ||||| | |||||||||| |||||||||||||||||||||
Sbjct 601 ATATCGCCGAGGTGTTCTTGAAGGATC-TTTACAGACTCGGAGCTCGGAAAATGTCTTTC 659
Query 665 ACTGGAATCTCACCTATGGGGTGTCTACCGCTGGAGAGAGTGACAAATCTTGACGACCCT 724
|| |||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||
Sbjct 660 ACCGGAATCTCGCCTATGGGATGTCTACCACTGGAGAGAGTGACGAATCTTGATGACCCT 719
Query 725 TTTAGCTGTGCTCGGAGTTATAATGATTTGGCTGTAGATTTCAATGGGAGATTGAGAAGA 784
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 TTTAGCTGTGCTCGGAGTTATAATGATTTGGCTGTCGATTTCAATGGGAGATTGAGAAGA 779
Query 785 TTGGTGACAAAACTGAATAGAGAGCTTACTGGAATAAAGATTTATTTCGCTAATCCTTAC 844
|||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 780 TTGGTGACGAAATTGAATAGAGAGCTTACTCGAATAAAGATATATTTCGCTAATCCTTAC 839
Query 845 GATATCATGTGGGATATTGTTACCAAACCTAATCTTTACGGTCTAGAGATATCAAGTTCT 904
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 840 GATATCATGTGGGATATTGTTGCCAAACCTAATCTTTACGGTCTAGAGATATCTAGTTCT 899
Query 905 GCCTGTTGCGGTACTGGATTGTTCGAGATGGGATTTCTTTGCGGCCAGGACAATCCGTTA 964
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCCTGTTGCGGTACGGGATTGTTCGAGATGGGATTTCTTTGCGGCCAGGACAATCCGTTA 959
Query 965 ACTTGCAGTGATGCCAATAAGTTCGTTTTCTGGGACGCATTTCACCCGACCGAGAGGACT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 960 ACTTGCAGTGATGCCAATAAGTTCGTTTTCTGGGACGCATTTCACCCGACCGAGAAGACT 1019
Query 1025 AATCAGATTGTGTCTGATCACTTCTTCAAGCATCTCAAGAATCTGTTTCATTGATCCTAA 1084
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1020 AATCAGATTGTGTCTGATCACTTCTCCAAGCATCTTAAGAATCTGTTTCATTGATCCTAA 1079
Query 1085 ATTCCTATATAGTTT 1099
||||||||||| |||
Sbjct 1080 ATTCCTATATAATTT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5