BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43000.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483400 jgi|Araly1|483400|fgenesh2_kg.4__2460__AT2G43000.1 1428 0.0
> Ahg483400 jgi|Araly1|483400|fgenesh2_kg.4__2460__AT2G43000.1
Length=875
Score = 1428 bits (773), Expect = 0.0
Identities = 849/884 (96%), Gaps = 12/884 (1%)
Strand=Plus/Plus
Query 1 TTTTTATAAAGAATGACTTGATTGGTGTTCTAA-AGAGATCGATGTAGTGAAGATGAGTG 59
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1 TTTTTATACAGAATGACTTGATTGGTGTT-TAATAGAGATCGATGTAGTGAAGATGAGTG 59
Query 60 GCGAAGGTAACTTAGGTAAGGATCATGAAGAAGAAAACGAAGCACCACTTCCTGGGTTCA 119
||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 60 GCGAAGGTAACTTGGGTAAGGATCATGAAGAAG---ACGAAGCACCACTTCCTGGATTCA 116
Query 120 GGTTTCATCCGACGGATGAAGAGCTTTTAGGATACTATCTTCGAAGAAAAGTAGAGAACA 179
| |||||||||||||| || || |||||||| || |||||||||||||||||||||||||
Sbjct 117 GATTTCATCCGACGGACGAGGAACTTTTAGGGTATTATCTTCGAAGAAAAGTAGAGAACA 176
Query 180 AAACCATCAAACTCGAACTTATCAAACAGATCGATATCTATAAGTACGATCCTTGGGATC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AAACCATCAAACTCGAACTTATCAAACAGATCGATATCTATAAGTACGATCCTTGGGATC 236
Query 240 TTCCAAGAGTGAGCAGCGTCGGAGAAAAGGAGTGGTACTTCTTCTGCATGAGAGGTAGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 TTCCAAGAGTGAGCAGCGTCGGAGAAAAGGAGTGGTACTTCTTCTGCATGAGAGGCAGGA 296
Query 300 AATACAGGAATAGCGTTCGACCAAACCGAGTGACCGGTTCAGGTTTCTGGAAAGCCACTG 359
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 297 AATACAGGAATAGCGTTAGACCAAACCGAGTCACCGGTTCAGGTTTCTGGAAAGCCACTG 356
Query 360 GTATTGATAAACCGGTTTACTCCAATCTTGACTGTGTTGGTCTCAAGAAATCTCTGGTTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GTATTGATAAACCGGTTTACTCCAATCTTGACTGTGTTGGTCTCAAGAAATCTCTGGTTT 416
Query 420 ACTATCTTGGTTCAGCCGGTAAAGGCACCAAAACCGATTGGATGATGCATGAATTCCGCC 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 ACTATCTTGGTTCAGCCGGTAAAGGAACCAAAACCGATTGGATGATGCATGAATTCCGCC 476
Query 480 TCCCCTCCACCACGAAAACCGACTCTCCAGCTCAACAAGCAGAGGTATGGACACTTTGCA 539
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCCCCACCACCACAAAAACCGACTCTCCAGCTCAACAAGCAGAGGTATGGACACTTTGCA 536
Query 540 GAATCTTCAAACGAGTCACATCTCAAAGAAACCCAACCATCTTACCACCAAACCGAAAAC 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 537 GAATCTTCAAACGAGTCACATCTCAAAGAAACCCAACCATCGTACCACCAAACCGAAAAC 596
Query 600 CGGTTATCACTTTAACCGACACTTGTTCTAAGACCAGCAGCTTAGATTCCGACCACACGA 659
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 597 CGGTTATCACTTTAACCGACTCTTGTTCTAAGACCAGCAGCTTAGATTCCGACCACACGA 656
Query 660 GCCACCGTA-CAGTAGATTC-CATGTCCCACGAGCCGCCGCTTCCACAGCCACAGAATCC 717
||||||||| | ||||| | | |||||||||||||||||||||| ||||||||||| ||
Sbjct 657 GCCACCGTATC-GTAGAG-CACTTGTCCCACGAGCCGCCGCTTCCTCAGCCACAGAACCC 714
Query 718 TTATTGGAACCAACATATAGTTGGTTTTAATCAACCGACATATACTGGTAATGATAATAA 777
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 715 TTATTGGAACCAACATATGGTTGGTTTTAATCAACCGACATATACTTGTAATGATAATAA 774
Query 778 CCTCCTGATGAGTTTCTGGAACGGCAACGGTGGAGATTTCATAGGAGACTCAGCAAGTTG 837
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CCTCCTGA-G--TTTCTGGAACGGCAACGGTGGAGATTTCATAGGAGACTCAGCAAGTTG 831
Query 838 GGATGAACTTAGATCTGTTATAGATGGCAACACTAAACCCTAGT 881
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GGATGAACTTAGATCTGTTATAGATGGCAACACTAAACCCTAGT 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5