BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43010.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483401 jgi|Araly1|483401|fgenesh2_kg.4__2461__AT2G43010.2 2158 0.0
> Ahg483401 jgi|Araly1|483401|fgenesh2_kg.4__2461__AT2G43010.2
Length=1633
Score = 2158 bits (1168), Expect = 0.0
Identities = 1434/1553 (92%), Gaps = 56/1553 (4%)
Strand=Plus/Plus
Query 177 AGATCTTCTCTTTCAACTTCTGATTCGTCCAGAAGCTTTCCTAATCTGAGATCTGACATG 236
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 AGATCTTCTCCTTCAACTTCTGATTCGTCCAGAAGCTTTCCTAATCTGAGATCTGACATG 190
Query 237 GAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATC 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATA 250
Query 297 AGGCCACAAGATGAACTAGTGGAGTTATTATGGCGAGATGGACAAGTGGTTCTGCAGAGC 356
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 251 AGGCCACACGATGAACTAGTGGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTGCAGAGC 310
Query 357 CAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGATCATCATGAA-GAAGCCCTAAG 415
|||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||| |||
Sbjct 311 CAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGAACGTCATGAAGGAA-CCCAAAG 369
Query 416 ATCCAGCACCTTTCTTGAAGATCAAGAAACTGTCTCTTGGATCCAATACCCTCCAGATGA 475
||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 370 ATCCAACACCTTTCTTGAAGATCAAGAAACTGTGTCTTGGCTCCAATACCCTCCAGATGA 429
Query 476 AGACCCATTCGAACCCGACGACTTCTCCTCCCACTTCTTCTCAACCATGGATCCCCTCCA 535
||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 430 AGACCCATTCGAAACCGACGACTTCTCCTCCCACTTCTTCTCAACCGTCGATCCCCTCCA 489
Query 536 GAGACCAACCTCAGAGACGGTTAAGCCTAAGTCCAGTCCTGAA-CCTCCTCAAGTCATGG 594
||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 490 GAGACCAACCTCAGAGACGGTTAAGCCTAAGTCTGGTCCT-AACCCTCCTCAAGTCATGG 548
Query 595 TTAAGCCTAAGGCCTGTCCTGACCCTCCTCCTCAAGTCATGCCTCCTCCAAAATTTAGGT 654
|||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 549 TTAAGCCTAAGGCCTGTCCTGA--C-CCTCCTCAAGTCATGCCTCCCCCTAAATTTAGGT 605
Query 655 TAACAAATTCATCATCGGGGATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACCG 714
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 606 TAACAAATTCGCCATCGGGAATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACAA 665
Query 715 TTGGACCTAGCCATTGCGGAAGCAACCCATCACAGAACGATCTCGATGTCTCAATGAGTC 774
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 666 TTGGACCTAGCCATTGCGGGAGCAACCCATCCCAGAACGATCTCGATGTCTCAATGAGTC 725
Query 775 ATGATCGAAGCAAAAACATAGAAGAAAAGCTTAATCCGAACGCAAGTTCCTCATCAGGTG 834
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 726 AAGATCGAAGCAAAAACATAGAAGAAAAGCTTAACCCGAACGCAAGTTCCTCATCAGGTG 785
Query 835 GCTCCTCTGGTTGCAGCTTTGGCAAAGATATCAAAGAAATGGCTAGTGGAAGATGCATCA 894
||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||
Sbjct 786 GCTCCTCTGGTTGCAGCTTTGGCAAGGATATCAAAGAAATGACTTGTGGAAGAAGCATCA 845
Query 895 CAACCGACCGTAAGAGAAAACGTATA-AAT-CACACTGACGAATCTGTATCTCTATCAGA 952
|||| ||||||||||||||| | ||| ||| ||||||| || |||||||||||||||||
Sbjct 846 CAACAGACCGTAAGAGAAAA-G-ATATAATGGACACTGATGACTCTGTATCTCTATCAGA 903
Query 953 TGCAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGA 1012
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TGTAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGA 963
Query 1013 AGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTT 1072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 964 AGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTCT 1023
Query 1073 GCAAGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCAT 1132
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GCAGGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCAT 1083
Query 1133 AGATTATTTGAAATCACTTCAGTTACAGCTTCAAGTGATGTGGATGGGGAGTGGAATGGC 1192
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1084 AGATTATTTGAAATCACTTCAGTTACAACTTCAAGTGATGTGGATGGGGAGTGGAATGGC 1143
Query 1193 GGCGGCGGCGGCTTCGGCTCCGATGATGTTCCCCGGAGTTCAACCTCAGCAGTTCATACG 1252
|||||| | | | |||||||||||||||||||||||||| || |||||||||
Sbjct 1144 GGCGGC------T-C--C---GATGATGTTCCCCGGAGTTCAACCTCCGCCGTTCATACG 1191
Query 1253 TCAGATACAGAGCCCGGTACAGTTACCTCGATTTCCGGTTATGGATCAGTCTGCAATTCA 1312
|||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1192 TCAGATGCAGAGTCCGGTACAGTTACCTCGATTTCCGGTTATGGATCGGTCTGCAATTCA 1251
Query 1313 GAACAATCCCGGTTTAGTTTGCCAAAACCCGGTACAAAACCAGATCATCTCCGACCGGTT 1372
||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||
Sbjct 1252 GAACAATCCCGGTTTAGTTTGTCAGAACCCGATACAAAACCAGATAATCTCCGACCGGTT 1311
Query 1373 TGCTAGATACATCGGTGGGTTCCCACACATGCAGGCCGCGACTCAGATGCAGCCGATGGA 1432
|||||| |||||||||||||||||||| |||||||||||| ||||| | | ||||||
Sbjct 1312 TGCTAGGTACATCGGTGGGTTCCCACAGATGCAGGCCGCGGCTCAG---C--C-GATGGA 1365
Query 1433 GATGTTGAGATTTAGTTCACCGGCGGGACAGCAAAGTCAACAACCGTCGTCTGTGCCGAC 1492
|||||| |||||| ||| ||||||||||||||||| |||||||||| | ||| ||||||
Sbjct 1366 GATGTTAAGATTTGGTTTACCGGCGGGACAGCAAATTCAACAACCG-C--CTGCGCCGAC 1422
Query 1493 GAAGACCACCGACGGTTCTCGTTTGGACCACTAGGTTGGTGAGCCActtttttacttcct 1552
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1423 GAAGATCACCGACGGTTCTCGTTTGGACCACTAGGTTGGTGAGGCACTTTTTTACTTCCT 1482
Query 1553 tatttttggtatgtttcttttt-tatatctatctttctGAACATACTTAAAACGTTCAAG 1611
|||||||||||||||| ||||| | ||||||| || ||||||||||||||||||| |
Sbjct 1483 TATTTTTGGTATGTTTGTTTTTCT-TATCTAT-TTA-TGAACATACTTAAAACGTT-A-- 1536
Query 1612 GATGTATTATTATAGAGTA-AACGTGCAACTTCATTACGTTATTTTCTGTATATGTGAGT 1670
| | ||||| ||||| |||||||||||||||||||| ||||| | |||
Sbjct 1537 --T--A--------GAGTACAACGTACAACTTCATTACGTTATTTTATGTAT--G--AGT 1580
Query 1671 TTATGTATGTCAAAATGACATGATGAGATTTTTTGTAAACAACATCTTAAAAA 1723
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1581 TTATGTATGTCAAAATGACATGATGAGATTTTTTGTAAACAACATGTTAAAAA 1633
Score = 169 bits (91), Expect = 8e-41
Identities = 119/131 (91%), Gaps = 7/131 (5%)
Strand=Plus/Plus
Query 1 ACTTTCTGTCTGTACCCAAAAGAAGTAATGAACctctctcatcttcttcttctctgtttc 60
|||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||
Sbjct 1 ACTTTCTGTCTGTACCCAAAAGAAGTAAAGAACCTCTCTTATCATCTTCTTCTCTGTTTC 60
Query 61 tttcatgttttgtgagttgttt-ctcaacaattttct-GGTCTCTT-agagtgagaggag 117
|||||||||||||||| |||| ||||||||||| || |||||||| |||||||||| |
Sbjct 61 TTTCATGTTTTGTGAGA-GTTTTCTCAACAATTT-CTTGGTCTCTTTAGAGTGAGAGAA- 117
Query 118 a-gagatagag 127
| |||||||||
Sbjct 118 ACGAGATAGAG 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5