BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43018.1
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483403 jgi|Araly1|483403|fgenesh2_kg.4__2463__AT2G43018.1 3147 0.0
Ahg486367 jgi|Araly1|486367|fgenesh2_kg.5__2359__AT3G59052.1 1310 0.0
> Ahg483403 jgi|Araly1|483403|fgenesh2_kg.4__2463__AT2G43018.1
Length=1985
Score = 3147 bits (1704), Expect = 0.0
Identities = 1902/1995 (95%), Gaps = 23/1995 (1%)
Strand=Plus/Plus
Query 22 tttttttgttttctctctctagaagtctctctgttttcatctttctctctct--ctctct 79
||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |
Sbjct 1 TTTTTTTGTTTTCTCTCTCTAGAAG--TCTCTGTTTTCATCTTTCTCTCTCTAGC-CT-T 56
Query 80 agctcttcttcctcgtttctggcttttctGGGAATTTTGATC-CTTTGGCCCCCATTGCT 138
||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||| |
Sbjct 57 TGCTCTTCTTTCTCGTTTCTGGCGTTTCTGGGAATTTTGATCTATTTTGCCCCCATTGTT 116
Query 139 CGCTTGAATTACGAATCAGATATCGCCGATCGTCGTAGATCTGCGTTGATACT-GTCCGG 197
| |||||| |||| ||| ||||||||||||||||||||||||||||||||| | | ||||
Sbjct 117 CTCTTGAAGTACGCATCCGATATCGCCGATCGTCGTAGATCTGCGTTGATATTAG-CCGG 175
Query 198 CTGAGT-AAA-CAGGGTGAACAAAAACCAAAAACAGAGAGGGGGTTTAAAAATCCT---G 252
|||||| ||| ||| |||||||||||||||||||| | |||||||||||||||||| |
Sbjct 176 CTGAGTAAAAGCAGAGTGAACAAAAACCAAAAACA-A-AGGGGGTTTAAAAATCCTGAAG 233
Query 253 --AAGA-AAATCGCATGAATTTGTTTGGAAGCCTGATTTTTTCATCTTCGATTTCGAGCC 309
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AAAAGAGAAATCGCATGAATTTGTTTGGAAGCCTGATTTTTTCATCTTCGATTTCGAGCC 293
Query 310 ACTTCACGACTTGTCTTCTCATCTTTATTCTTCATTTCTCTCCCCAGCTtaatagtaata 369
|||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct 294 ACTTCACGACTTGTCTTCTCATATTTATTCTTCATTTCTCTCCTCAGCTTAATTGTAATA 353
Query 370 ataataataataatagtaatcgtaattccaataatCTCGAGAGTAATCGTTTGATCAATT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ATAATAATAATAATAGTAATCGTAATTCCAATAATCTCGAGAGTAATCGTTTGATCAATT 413
Query 430 GaaaaaaaaaTCATGGAGTCCAGGAAAAACTCTGATCGTCAAATGCGTAGAGCTAATTGC 489
| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 414 G---AATAAATCATGGAGTCTAGGAAAAACTCTGATCGTCAAATGCGTAGAGCTAATTGC 470
Query 490 TTTTCAGCTGGTGAGAGGATGAAGACAAGGTCGCCCTCCGTGATTGTGATCGGAGGTGGT 549
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 471 TTTTCAGCTGGTGAGAGGATGAAGACAAGGTCTCCGTCCGTGATTGTGATCGGAGGTGGT 530
Query 550 TTCGGTGGGATTTCAGCTGCTCGCACTCTTCAGGATGCTTCCTTTCAGGTTATGGTACTG 609
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 531 TTTGGTGGGATTTCAGCTGCTCGCACTCTTCAAGATGCTTCCTTTCAGGTTATGGTACTG 590
Query 610 GAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTT 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCCTGTT 650
Query 670 GATCTTGGTGCATCATGGCTGCATGGAGTATGCAAGGAGAATCCTCTCGCACCAGTTATT 729
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 651 GATCTTGGTGCATCATGGCTGCATGGAGTATGCAAAGAGAATCCTCTGGCACCAGTAATT 710
Query 730 GGAAGACTTGGACTGCCCTTGTATCGTACTAGCGGTGACAATTCCGTCCTGTATGATCAT 789
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 711 GGAAGACTGGGACTGCCCTTGTATCGTACTAGCGGTGACAATTCTGTCCTGTATGATCAT 770
Query 790 GATCTCGAGAGCTATGCTCTGTTTGATATGGATGGCAACCAAGTTCCTCAAGAATTGGTA 849
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 771 GATCTCGAGAGCTATGCTCTGTTTGATATGGATGGCAACCAAGTTCCTCAAGAGTTGGTA 830
Query 850 ACTCAGATTGGCGTAACGTTTGAGCGTATTTTGGAAGAGATCAATAAAGTCAGGGATGAG 909
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 ACTCAGATTGGCGTAACTTTTGAGCGTATTTTGGAAGAGATCAATAAAGTCAGGGATGAG 890
Query 910 CAGGATGCTGACATTTCAATTTCTCAGGCTTTCTCAATTGTCTTTTCTAGGAAACCCGAG 969
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 891 CAGGATGCAGACATTTCAATTTCTCAGGCTTTCTCAATTGTCTTTGCTAGGAAACCCGAG 950
Query 970 CTGAGGTTAGAGGGGCTTGCACACAACGTACTTCAATGGTATGTATGCCGCATGGAAGGA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 CTGAGGTTAGAGGGGCTTGCACACAACGTACTTCAATGGTATGTATGCCGCATGGAAGGA 1010
Query 1030 TGGTTTGCCGCAGATGCTGAAACCATCTCTGCAAAGTGTTGGGACCAGGAGGAATTGTTG 1089
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1011 TGGTTTGCTGCAGATGCTGAAACCATCTCTGCAAAGTGTTGGGACCAGGAGGAATTGCTG 1070
Query 1090 CCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAATACTCTGGCGAAA 1149
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1071 CCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAACACTCTGGCGAAA 1130
Query 1150 GGTCTTGATATCCGAGTAGGCCACAGGGTTACTAAGATTGTCAGGCGGTACAATGGAGTG 1209
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1131 GGTCTTGATATCCGAGTAGGCCACAGGGTTACTAAGATTGTCAGGCGTTACAATGGGGTG 1190
Query 1210 AAGGTAACGACAGAAAACGGGCAAACTTTTGTTGCGGATGCTGCAGTCATTGCTGTCCCT 1269
||||||||||||||||||||| |||| |||||||||||||||||||||||||| || |||
Sbjct 1191 AAGGTAACGACAGAAAACGGGGAAACATTTGTTGCGGATGCTGCAGTCATTGCGGTTCCT 1250
Query 1270 CTTGGAGTTTTAAAATCGGGAACCATAAAGTTCGAACCTAAGCTACCTGAGTGGAAACAA 1329
|| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1251 CTCGGAGTCTTAAAATCTGGAACCATAAAGTTCGAACCAAAGCTACCTGAGTGGAAACAA 1310
Query 1330 GAAGCAATCAACGACCTAGGAGTAGGTATTGAGAACAAGATCATACTACATTTTGAGAAA 1389
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1311 GAAGCAATCAACGACCTAGGAGTAGGTATCGAGAACAAGATCATACTACATTTTGAGAAA 1370
Query 1390 GTCTTTTGGCCGAAAGTAGAGTTTCTAGGAGTGGTAGCTGAAACCTCCTACGGTTGCAGT 1449
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GTCTTCTGGCCGAAAGTAGAGTTTCTAGGAGTGGTAGCTGAAACCTCCTACGGTTGCAGT 1430
Query 1450 TATTTTTTGAACCTGCACAAGGCCACGGGTCATCCGGTTCTGGTTTACATGCCGGCTGGT 1509
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1431 TATTTTTTGAACCTGCACAAGGCCACAGGTCATCCAGTTCTGGTTTACATGCCGGCTGGT 1490
Query 1510 CAGCTTGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCAAATTTCGCCGTCTTG 1569
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1491 CAGCTCGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCAAATTTTGCCGTCTTG 1550
Query 1570 CAACTCCAGAGAATTCTTCCCGATGCATTGCCTCCGGTACAGTATCTCGTGTCGAGGTGG 1629
||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||
Sbjct 1551 CAACTCCAGAGAATTCTTCCCGATGCATTGCCTCCAGTTCAATATCTTGTATCGAGGTGG 1610
Query 1630 GGATCTGATGTGAATTCAATGGGATCTTATAGCTATGATATCGTGGGCAAACCTCATGAT 1689
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1611 GGATCGGATGTGAATTCAATGGGATCTTATAGCTATGATATCGTGGGGAAACCTCATGAG 1670
Query 1690 CTCTACGAGAGGCTTAGGGTTCCAGTGGATAACTTATTCTTTGCCGGTGAAGCGACGAGC 1749
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1671 CTCTACGAGAGGCTTAGGGTTCCAGTGGATAACTTATTCTTTGCCGGTGAAGCGACAAGC 1730
Query 1750 TCGAGCTTCCCGGGCTCGGTTCACGGCGCTTATTCAACTGGATTGATGGCAGCTGAAGAT 1809
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 TCGAGCTTCCCGGGCTCGGTTCACGGCGCTTATTCAACTGGATTGATGGCAGCTGAAGAA 1790
Query 1810 TGTAGGATGCGAGTTCTGGAGCGGTATGGTGAGTTGGATCTGTTCCAGCCTGTGATGGGC 1869
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TGTAGGATGCGAGTTTTGGAGCGGTATGGTGAGTTGGATCTGTTCCAGCCTGTGATGGGC 1850
Query 1870 GAGGAAGGACCTGCCTCTGTACCTCTTCTTATATCTCGTCTCTAAACTCCATCAGTTATC 1929
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GAGGAAGGACCTGCCTCTGTTCCTCTTCTTATATCTCGTCTCTAAACTCCATCAGTTATC 1910
Query 1930 GTTTACT-AGAAGGAACCTCAAGTGATGATTGTCTTAATATGAAACTAAAATTATTCTCG 1988
||||||| | || ||||||||||||||| | |||||||| |||||||||| ||||||||
Sbjct 1911 GTTTACTTACAAAGAACCTCAAGTGATGCTGGTCTTAATTTGAAACTAAAGCTATTCTCG 1970
Query 1989 TGTCGGATCGTTTAA 2003
| |||||||| ||||
Sbjct 1971 TATCGGATCGGTTAA 1985
> Ahg486367 jgi|Araly1|486367|fgenesh2_kg.5__2359__AT3G59052.1
Length=1997
Score = 1310 bits (709), Expect = 0.0
Identities = 1240/1494 (83%), Gaps = 46/1494 (3%)
Strand=Plus/Plus
Query 375 aataataatagtaat-cgtaattccaataatCTCGAGAGTAA-TCGTTTGATCAATTGaa 432
||||||| ||||||| | ||||| ||||||| || |||||| | || ||||| ||||
Sbjct 260 AATAATACTAGTAATAC-TAATTTTAATAATCCCGTGAGTAATTAGTCTGATC-ATTG-- 315
Query 433 aaaaaaaTCATGGAGTCC--AGGAAAAACTCTGATCGTCAAATGCGTAGAGCTAATTGCT 490
||||||||||||| ||| |||| || ||||||| |||||| ||||| ||| |
Sbjct 316 --TTGAATCATGGAGTCCGGAGGCAAAA--CTAATCGTCAGCTGCGTAAAGCTATTTG-T 370
Query 491 -TTTCAGCTGGTGAGAGGATGAAG-ACAAG-G-TCGCCCTCCGTGATTGTGATCGGAGGT 546
| ||||| | |||| ||||||| | ||| | || || || ||||| ||||| ||||||
Sbjct 371 GTCTCAGCCGACGAGAAGATGAAGAAGAAGAGATCACCTTCAGTGATAGTGATTGGAGGT 430
Query 547 GGTTTCGG-TGGGATTTCAGCTGCTCGCACTCTTCAGGATGCTTCCTTTCAGGTTATGGT 605
||| | || ||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 431 GGTAT-GGCTGGAATTTCAGCTGCTCGCACTCTTCAAGATGCTTCCTTTCAGGTTGTGGT 489
Query 606 ACTGGAGTCCCGTGACAGAATTGGTGGACGAGTTCACACTGATTACTCATTTGGTTTTCC 665
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 490 GTTGGAGTCTCGTGATAGAATTGGTGGACGAGTTCACACTGATTACTCATTCGGTTTTCC 549
Query 666 TGTTGATCTTGGTGCATCATGGCTGCATGGAGTATGCAAGGAGAATCCTCTCGCACCAGT 725
|||||||| |||||||| ||| ||||||| || || || ||||||||||| || ||||
Sbjct 550 AGTTGATCTGGGTGCATCTTGGTTGCATGGTGTCTGTAAAGAGAATCCTCTGGCTGCAGT 609
Query 726 TATTGGAAGACTT-GGACTGCCC-TTGTATCGTACTAGCGGTGACAATTCCGTCCTGTAT 783
||||| ||| || ||| | ||| || ||||||||||| ||||||||||| || |||||
Sbjct 610 AATTGGGAGA-TTAGGATTACCCCTT-TATCGTACTAGTGGTGACAATTCGGTTTTGTAT 667
Query 784 GATCATGATCTCGAGAGCTATGCTCTGTTTGATATGGATGGCAACCAAGTTCCTCAAGAA 843
||||| ||||| |||||||||||||| || || | || |||||||||||||||||||||
Sbjct 668 GATCACGATCTTGAGAGCTATGCTCTATTCGACAAGGCTGGCAACCAAGTTCCTCAAGAG 727
Query 844 TTGGTAACTCA-GATTGGCGTAACGTTTGAGCGTATTTTGGAAGAGATCAATAAAGTCAG 902
|||||||| | | |||||| || ||||||| ||| ||||||||||| |||||||||
Sbjct 728 TTGGTAACAAAAG-TTGGCGAAAATTTTGAGCACATTCTGGAAGAGATCTCTAAAGTCAG 786
Query 903 GGATGAGCAGGATGCTGACATTTCAATTTCTCAGGC-TTTCTCAATTGTCTTTTCTAGGA 961
|||||||||||| | ||||| ||||| |||| || ||| || ||||| || ||||
Sbjct 787 GGATGAGCAGGACGAAGACATGTCAATAGCTCAAGCCTTT-TCTATTGTATTCAAGAGGA 845
Query 962 AACCC-GAGCTGAGGTTAGAGGGGCTTGCACACAACGTACTTCAATGGTA-TGTATGCCG 1019
| ||| || ||||||| ||||||||||| || || || ||||| ||||| | | |||||
Sbjct 846 A-CCCTGAATTGAGGTTGGAGGGGCTTGCTCATAATGTGCTTCAGTGGTACT-TGTGCCG 903
Query 1020 CATGGAAGGATGGTTTGCCGCAGATGCTGAAACCATCTCTGCAAAGTGTTGGGACCAGGA 1079
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 904 CATGGAAGGATGGTTTGCTGCTGATGCTGAAACCATCTCGGCAAAGTGTTGGGACCAGGA 963
Query 1080 GGAATTGTTGCCTGGTGGACACGGTCTTATGGTTAGAGGGTATCGTCCTGTCATCAATAC 1139
||| | |||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct 964 AGAACTATTGCCTGGTGGACATGGTCTTATGGTTAGAGGGTATCGCCCTGTAATCAACAC 1023
Query 1140 TCTGGCGAAAGGTCTTGATATCCGAGTAGGCCACAGGGTTACTAAGATTGTCAGGCGGTA 1199
||| |||||||||||||||| ||| || ||||||||||||| |||||||| ||||| ||
Sbjct 1024 TCTCTCGAAAGGTCTTGATATACGACTAAGCCACAGGGTTACCAAGATTGTAAGGCGCTA 1083
Query 1200 CAATGGAGTGAAGGTAACGACAGA-AAACGG-GCAAACTTTTGTTGCGGATGCTGCAGTC 1257
|| |||||||||||| || ||||| ||| || | | || |||||||||||||||||||||
Sbjct 1084 CAGTGGAGTGAAGGTGACTACAGAGAAA-GGAG-ACACGTTTGTTGCGGATGCTGCAGTC 1141
Query 1258 ATTGCTGTCCCTCTTGGAGTTTTAAAATCGGGAACCATAA-AGTTCGAACCTAAGCTACC 1316
|||||| | |||||||||||| |||| || |||| |||| | |||||||| ||||| ||
Sbjct 1142 ATTGCTCTTCCTCTTGGAGTTCTAAAGTCAGGAATGATAACA-TTCGAACCAAAGCTTCC 1200
Query 1317 TGAGTGGAAACAAGAAGCAATCAACGACCTAGGAGTAGGTATTGAGAACAAGATCATACT 1376
|||||||||| ||||| |||||||| || || ||||| || |||||||||||||||||
Sbjct 1201 ACAGTGGAAACAGGAAGCTATCAACGATCTCGGTGTAGGAATCGAGAACAAGATCATACT 1260
Query 1377 ACATTTTGAGAAAGTCTTTTGGCCGAAA-GTAGAGTTTCTAGGAGTGGTAGCTGAAACCT 1435
|| ||||| || ||||||||||| ||| |||||||||||||||||||| || ||||| |
Sbjct 1261 GCACTTTGACAATGTCTTTTGGCC-AAACGTAGAGTTTCTAGGAGTGGTTGCAGAAACTT 1319
Query 1436 CCTACGGTTGCAGTTATTTTTTGAACCTGCACAAGGCCACGGGTCATCCGGTTCTGGTTT 1495
||||||| ||||||||||| ||||||||||| || ||||| | ||||| ||||| ||||
Sbjct 1320 CCTACGGATGCAGTTATTTCTTGAACCTGCATAAAGCCACAAGCCATCCCGTTCTTGTTT 1379
Query 1496 ACATGCCGGCTGGTCAGCTTGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGCAA 1555
||||||||||||||||||| || | |||||| ||||||| |||||||||| |||||||||
Sbjct 1380 ACATGCCGGCTGGTCAGCTCGCTAGAGACATAGAGAAAAAGTCTGATGAATCAGCTGCAA 1439
Query 1556 ATTTCGCCGTCTT-GCAACTCCAGAGAATTCTTCCCGATGCAT-TGCCTCCGGTACAGTA 1613
|||| ||| | || ||||||||||| ||||||||| ||||||| | | ||| || | ||
Sbjct 1440 ATTTTGCCTT-TTCGCAACTCCAGAAAATTCTTCCAGATGCATCTTCA-CCGATAAATTA 1497
Query 1614 TCTCGTGTCGAGGTGGGGATCTGATGTGAATTCAATGGGATCTTATAGCTATGATATCGT 1673
| | || || ||||||||||| || | |||||| ||||||| ||||||||||| || ||
Sbjct 1498 TTTGGTATCAAGGTGGGGATCAGACATCAATTCATTGGGATCATATAGCTATGACATTGT 1557
Query 1674 GGGCAAACCTCATGATCTCTACGAGAGGCTTAGGGTTCCAGTGGATAA-CTTATTCTTTG 1732
| ||||||||| || ||||| ||||| || || || ||| ||||||| || ||||||||
Sbjct 1558 GAACAAACCTCACGACCTCTATGAGAGACTGAGAGTGCCATTGGATAATCT-ATTCTTTG 1616
Query 1733 CCGGTGAAGCGACGAGCTCGAGCTTCCCGGGCTCGGTTCACGGCGCTTATTCAACTGGAT 1792
| || ||||| || |||||||||| |||||| || || ||||| ||||||||||| |||
Sbjct 1617 CGGGGGAAGCCACTAGCTCGAGCTACCCGGGGTCAGTGCACGGTGCTTATTCAACCGGAG 1676
Query 1793 TGATGGCAGCTGAAGATTGTAGGATGCGAGTTCTGGAGCGGTATGGTGAG-TTG 1845
|| ||||||||||||| || |||||||| || || ||||| ||||| ||| |||
Sbjct 1677 TGCTGGCAGCTGAAGACTGCAGGATGCGTGTGCTTGAGCGCTATGGAGAGCTTG 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79265799845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5