BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43040.1
Length=2582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483406 jgi|Araly1|483406|fgenesh2_kg.4__2466__AT2G43040.1 3742 0.0
> Ahg483406 jgi|Araly1|483406|fgenesh2_kg.4__2466__AT2G43040.1
Length=2365
Score = 3742 bits (2026), Expect = 0.0
Identities = 2246/2352 (95%), Gaps = 15/2352 (1%)
Strand=Plus/Plus
Query 68 aaacaaaaaGTTTCCTCTCTTTTTCTAATTTTTTAAAGTTTCTTTCATCTTCTTCAGATC 127
||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 28 AAA-AAAAAGTTTCCTCTC--TTTCTAATTTTTAAAAGTTTCTTTCATCTTCTTCAGATC 84
Query 128 CGAATTGTCGCCGCGAAATTCGTCAGTGCAGCTTCTTCTTCTTCGCGTACTTTATTCGAT 187
|||||| ||||||| ||||||| |||||||| ||||||| | || || | |||||||
Sbjct 85 CGAATTTTCGCCGCAAAATTCGCCAGTGCAG---CTTCTTC-T--CG-ACCTGATTCGAT 137
Query 188 CGGCTGTCTGAAGAACATGAAGCCGATGATCGTAGTTGCTGCTAGTTACGGTGGATTGAT 247
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 138 CGGCTGTCTGAAGAACATGAAGCCGATGATCGTAGTTGTTGCTTGTTACGGTGGATTGAT 197
Query 248 GTTTGGATGGACGCAGAAATTTTGATGTGGGTTTAGTCTAAAAGGTGAAGAACAATGCTC 307
|||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 198 ATTTGGAGGGACGCAGAAATTTTGATGCGGGTTTAGTCTTAAAGGT---GAACAATGCTC 254
Query 308 GGGAATCAATCCGCGGATTTTAGTGAGAAGGGGGAAGATGAGATCGTCAGACAGCTTTGT 367
|||||||||||||| |||||||| || || ||||| ||||||||| ||||||||||||||
Sbjct 255 GGGAATCAATCCGCCGATTTTAGCGAAAACGGGGATGATGAGATCATCAGACAGCTTTGT 314
Query 368 GCTAATGGGATTTGCATGAAAACAACTGAAGTTGAAGCAAAGCTTGATGAAGGAAATATT 427
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GCAAATGGGATTTGTATGAAAACAACTGAAGTTGAAGCAAAGCTTGATGAAGGAAATATC 374
Query 428 CAAGAAGCTGAATCTTCTTTGAGAGAAGGATTATCTCTCAATTTCGAGGAAGCAAGAGCA 487
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 375 CAAGAAGCTGAATCTTCTTTGAGAGAAGGATTATCTCTCAATTTTGAGGAAGCAAGAGCA 434
Query 488 CTTCTTGGAAGATTGGAATACCAAAGAGGGAATTTAGAAGGCGCACTTCGTGTCTTTGAA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CTTCTTGGAAGATTGGAATACCAAAGAGGGAATTTAGAAGGCGCACTTCGTGTCTTTGAA 494
Query 548 GGTATCGACCTTCAAGCAGCTATCCAGCGGTTACAGGTTTCCGTGCCTCTTGAGAAACCG 607
||||| ||||| || |||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 495 GGTATTGACCTCCAGGCAGCTATCCAGCGGTTACAGGCTTCCGTGCCTCCTGAGAAACCA 554
Query 608 GCTACTAAGAAAAACCGTCCCCGTGAACCGCAGCAATCAGTTTCTCAGCATGCTGCTAAC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 GCTACTAAGAAAAACCGTCCCCGTGAACCGCAGCAATCAGTTTCTCAGCATGCTGCTAAC 614
Query 668 TTGGTCCTTGAAGCTATCTACTTGAAAGCCAAATCCCTTCAAAAGCTTGGGAGAATAACT 727
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 615 TTGGTGCTTGAAGCTATCTACTTGAAAGCCAAATCTCTTCAAAAGCTTGGGAGAATAACC 674
Query 728 GAGGCTGCTCATGAATGCAAGAGTGTTCTTGATTCTGTTGAGAAGATATTTCAGCAAGGG 787
|||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 675 GAGGCTGCACGCGAATGCAAGAGTGTTCTTGATTCTGTTGAGAAAATATTCCAGCAAGGG 734
Query 788 ATACCAGATGCTCAAGTGGATAACAAACTTCAAGAAACCGTTAGCCACGCCGTTGAACTA 847
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 735 ATACCAGATGCTCAAGTGGATAACAAACTTCAAGAAACCGTTAGCCACGCAGTTGAACTA 794
Query 848 CTTCCTGCGCTATGGAAAGAATCTGGTGATTATCAAGAAGCCATATCTGCTTATAGACGC 907
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 795 CTTCCTGCGCTATGGAAAGAATCTGGTGATTATCAAGAAGCAATATCCGCTTATAGACGA 854
Query 908 GCGCTTTTAAGCCAATGGAATCTTGATAATGATTGTTGTGCAAGGATTCAAAAAGATTTT 967
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 855 GCGCTTTTAAGCCAATGGAATCTTGATAATGACTGTTGTGCAAGGATTCAGAAAGATTTT 914
Query 968 GCAGTCTTTCTTTTACATTCTGGAGTCGAAGCGAGTCCACCGAGTTTAGGTTCTCAGATA 1027
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GCAGTCTTTCTTCTACATTCTGGAGTCGAAGCGAGTCCACCGAGTTTAGGTTCTCAGATA 974
Query 1028 GAGGGATCGTACATACCTAGAAACAACATAGAAGAAGCCATTCTTCTTCTAATGATTCTT 1087
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 975 GAGGGATCTTACATACCTAGAAACAACTTAGAAGAAGCCATTCTTCTTCTAATGATTCTT 1034
Query 1088 TTAAAGAAGTTTAACCTCGGGAAAGCGAAATGGGATCCGTCTGTGTTTGAGCACCTTACC 1147
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TTAAAGAAATTTAACCTCGGGAAAGCGAAATGGGATCCGTCTGTGTTTGAGCACCTTACC 1094
Query 1148 TTTGCGTTATCTTTATGTAGTCAGACCGCGGTTCTCGCCAAGCAGCTTGAAGAAGTAATG 1207
||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1095 TTTGCGTTATCTTTATGTAGTCAGACCTCGGTTCTTGCCAAGCAACTTGAAGAAGTAATG 1154
Query 1208 CCTGGTGTGTTTAGCCGTATTGAGCGTTGGAACACTTTGGCTCTTTCTTATAGTGCAGCA 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 CCTGGTGTGTTTAGCCGTATTGAGCGTTGGAACACTTTGGCTCTTTCTTATAGTGCAGCA 1214
Query 1268 GGTCAAAACAGTGCTGCAGTTAACCTTCTTAGAAAGTCTCTGCATAAACACGAACAACCC 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 GGTCAAAACAGTGCTGCAGTTAACCTTCTTAGAAAGTCTCTGCATAAACACGAACAACCC 1274
Query 1328 GATGATCTTGTGGCGCTTTTGTTAGCTGCTAAGCTTTGCAGTGAAGAGCCTTCTTTAGCT 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GATGATCTTGTGGCGCTTTTGTTAGCTGCTAAGCTTTGCAGTGAAGAGCCTTCTTTAGCT 1334
Query 1388 GCTGAAGGTACGGGTTATGCGCAGAGAGCGATAAACAATGCTCAAGGTATGGATGAGCAT 1447
|| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1335 GCAGAAGGTGCGGGTTACGCGCAGAGAGCGATAAACAATGCTCAAGGTATGGATGAACAT 1394
Query 1448 TTGAAAGGCGTTGGTTTGAGGATGTTAGGACTTTGTTTAGGGAAACAAGCGAAGGTTCCG 1507
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1395 TTGAAAGGCGTTGGTTTGAGGATGTTAGGACTTTGTTTGGGGAAACAAGCGAAAGTTCCC 1454
Query 1508 ACATCGGATTTTGAAAGATCTCGGCTGCAATCAGAATCATTGAAAGCATTAGATGGAGCT 1567
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1455 ACATCGGATTTCGAAAGATCTCGGCTTCAATCAGAATCATTGAAAGCATTGGATGGAGCT 1514
Query 1568 ATAGCTTTTGAGCACAATAATCCTGATTTGATCTTTGAGTTAGGTGTTCAATACGCTGAG 1627
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1515 ATAGCATTTGAGCACAACAATCCTGATTTGATCTTTGAGTTGGGTGTTCAATATGCTGAG 1574
Query 1628 CAACGGAACTTAAAAGCTGCTTCCCGTTACGCCAAAGAGTTCATCGATGCAACGGGAGGG 1687
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1575 CAACGGAACTTAAAAGCTGCGTCCCGTTACGCCAAAGAGTTCATTGATGCAACGGGAGGG 1634
Query 1688 TCAGTGTTAAAAGGATGGAGATTTCTCGCGCTTGTTTTGTCAGCTCAACAACGGTTTTCA 1747
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1635 TCGGTGTTAAAAGGATGGAGATTTCTCGCGCTTGTTTTGTCGGCTCAACAACGGTTTTCA 1694
Query 1748 GAAGCAGAAGTTGTGACTGATGCTGCTTTAGATGAAACTGCAAAGTGGGATCAGGGACCT 1807
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1695 GAAGCTGAAGTTGTGACTGATGCTGCTTTAGATGAAACCGCAAAGTGGGATCAAGGACCT 1754
Query 1808 CTCTTGAGACTCAAAGCAAAGCTGAAAATCTCTCAGTCAAATCCAACAGAAGCCGTTGAG 1867
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1755 CTCTTGAGACTTAAAGCAAAGCTAAAAATCTCTCAGTCAAATCCAACAGAAGCCGTTGAG 1814
Query 1868 ACTTATCGTTACCTTCTTGCATTGGTTCAAGCGCAAAGGAAATCTTTCGGACCTCTCAGA 1927
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1815 ACTTATCGTTACCTTCTTGCGTTGGTTCAAGCGCAAAGGAAATCTTTCGGACCTCTCAGA 1874
Query 1928 ACTCTTTCTCAGATGGAGGAAGACAAAGTGAATGAGTTTGAAGTGTGGCATGGCTTGGCT 1987
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1875 ACTCTTTCTCAGATGGAGGAAGACAAAGTGAATGAGTTTGAAGTGTGGCATGGATTAGCA 1934
Query 1988 TATCTTTACTCAAGCCTTTCGCATTGGAACGACGTAGAAGTCTGTCTGAAAAAAGCC-GG 2046
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1935 TATCTTTACTCAAGCCTTTCGCATTGGAACGACGTAGAAGTCTGTCT-AAAAAAGGCAGG 1993
Query 2047 AGAGCTGAAACAATACTCTGCTTCAATGTTGCATACAGAAGGTCGAATGTGGGAAGGACG 2106
|||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 1994 CGAGCTGAAGCAATACTCTGCTTCGATGCTGCACACAGAAGGTCGAATGTGGGAAGGACG 2053
Query 2107 AAAGGAGTTCAAACCCGCGCTAGCAGCTTTCTTGGACGGTTTATTACTAGACGGATCATC 2166
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2054 AAAGGAGTTCAAACCCGCGTTAGCAGCTTTCTTGGATGGTTTATTACTAGACGGATCATC 2113
Query 2167 GGTTCCTTGCAAAGTAGCGGTTGGAGCGTTATTGTCCGAAAGAGGGAAAGATCATCAGCC 2226
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2114 GGTTCCTTGCAAAGTAGCGGTTGGAGCATTGCTGTCCGAAAGAGGGAAAGATCATCAGCC 2173
Query 2227 AACTCTCCCCGTGGCTAGAAGTTTGCTCTCTGATGCATTGAGGATCGATCCAACAAACCG 2286
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2174 GACCCTCCCCGTGGCGAGAAGTTTGCTCTCTGATGCATTGAGGATCGATCCGACAAACCG 2233
Query 2287 AAAAGCTTGGTATTACTTAGGAATGGTTCATAAATCTGATGGACGTATAGCTGATGCTAC 2346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2234 AAAAGCTTGGTATTACTTAGGAATGGTTCATAAATCTGATGGACGTATAGCTGATGCTAC 2293
Query 2347 TGATTGCTTCCAAGCTGCTTCTATGCTTGAAGAGTCTGATCCTATTGAAAGCTTCTCAAC 2406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 TGATTGCTTCCAAGCTGCTTCTATGCTTGAAGAGTCTGATCCTATTGAAAGCTTCTCAAC 2353
Query 2407 CATTCTTTAAAA 2418
||||||||||||
Sbjct 2354 CATTCTTTAAAA 2365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97358666220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5