BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G43050.1
Length=1850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483407 jgi|Araly1|483407|fgenesh2_kg.4__2467__AT2G43050.1 2615 0.0
Ahg938912 jgi|Araly1|938912|scaffold_503103.1 551 7e-156
> Ahg483407 jgi|Araly1|483407|fgenesh2_kg.4__2467__AT2G43050.1
Length=1700
Score = 2615 bits (1416), Expect = 0.0
Identities = 1573/1650 (95%), Gaps = 5/1650 (0%)
Strand=Plus/Plus
Query 1 TAATCATTAAGTTTCATAACTATAATGGCTTCATCATCATCAATATCAAATCACAAGATT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TAATCATTAAGTTTCATAACTATTATGGCTTCATCATCATCAATATCAAATCACAAGATT 60
Query 61 CCAAACACACTAATGTTTTTGGTGATCGTAAACTTTTTGTACCTAATTCAAACTAATTCA 120
||||| ||||||||||||||| ||||| |||||||||| |||||||| ||| ||| ||||
Sbjct 61 CCAAAAACACTAATGTTTTTGCTGATCTTAAACTTTTTATACCTAATCCAACCTACTTCA 120
Query 121 GCTGTCAGTATCAGTTCCAATTCCAACTCCCACTTCTCAAGATTCTCGAGACATCGAAGC 180
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGTGAGTACCAGTTCCAATTCCAACTCCCACTTCTCAAGATTCTCGAGACATCGAAGC 180
Query 181 TCACCATCATCAAAAACCAAACAAGGGTTTCTTGCAACGGTCCAAGAGAGTATGAACCAT 240
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TCACCATCATCAAAACCCAAACAAGGGTTTCTTGCATCGGTCCAAGAGAGTATGAACCAT 240
Query 241 GCTCTCTTGGCTCGTTCTCTTGCTTTCAACCTCACTCTTTCTCATCGAACCGTACAAACC 300
|||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 241 GCTCTCTTAGCTCGTTCTCTCGCTTTCAATCTCACTCTTTCTCACCGAACCGTACAAACA 300
Query 301 CACACGTTCGATCCCATCCACGACTGCCTCGAGCTGCTCGACGACACACTTGACATGTTA 360
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CACACATTCGATCCCGTCCACGACTGCCTCGAGCTACTCGACGACACACTTGACATGTTA 360
Query 361 TCTCGCATCCATGCGGATAATGATGAAGAAGATGTCCATACATGGCTAAGCGCAGCACTC 420
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTCGCATACATGCGGATAATGACGAAGAAGATGTCCATACATGGCTAAGCGCAGCACTC 420
Query 421 ACGAACCAAGACACTTGTGAGCAGAGCCTTCAAGAAAAATCCGAGTCATACAAACACGGA 480
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 ACGAACCAAGATACTTGTGAGCAGAGCCTTCAAGAAAAATCCAAGTCATACAAACACGGA 480
Query 481 CTTGCGATGGATTTCGTCGCAAGAAACCTAACCGGTTTGTTGACTAGCTCGCTTGACTTG 540
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 481 CTTGCGATGGATTTCGTCGCAAGAAACCTCACCGGATTGTTGACTAACTCGCTTGACTTG 540
Query 541 TTCGTATCCGTCAAGTCAAAACACCGGAAACTCTTATCGAAACAAGAGTATTTTCCGACG 600
||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 541 TTCGTATCCGTGAAGTCAAAACACCGGAAACTCTTATCGGAACAAAAATATTTTCCGACG 600
Query 601 TTCGTTCCTTCGTCGGAGCAACGGAGGCTTCTAGAAGCTCCGGTGGAGGAGCTGAATGTT 660
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 601 TTCGTTCCTTCGTCGGAGCAGCGGAGGCTTCTAGAAGCTCCCGTGGAGGAGCTGAAGGTT 660
Query 661 GATGCGGTGGTGGCT-CCTGACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTT 719
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATGTGGTGGTGGCTGCC-GACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTT 719
Query 720 GTCTACGTCATTAGCGAGTAGTGGGGGCAGGACCAAAATATACCTAAAAGCCGGGACATA 779
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 720 GTCTACGTCATTAGCGAGTAGTGGGGGCAGGACCACAATATACCTAAAAGCCGGGACCTA 779
Query 780 TCATGAGAACATCAACATTCCGACGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCATGAGAACATCAACATTCCGACGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAA 839
Query 840 GGGTAAAACAGTCATTGTAGGTAGCAGAAGTAACAGAGGCGGCTGGACTACTTACAAAAC 899
||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 840 GGGTAAAACGGTCATTGTAGGTAGCCGAAGTAATAGAGGCGGCTGGACTACTTACAAAAC 899
Query 900 TGCAACCGTCGCCGCTATGGGGGAAGGGTTCATAGCGCGGGACATGACATTCGTGAACAA 959
||| ||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 900 TGCCACCGTCGCCGCGATGGGAGAGGGGTTCATAGCACGGGACATGACATTCGTGAACAA 959
Query 960 CGCCGGACCCAAATCGGAGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTCGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 CGCCGGACCCAAATCGGAGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTTGT 1019
Query 1020 GCATCGATGCTCAGTGGAAGGATACCAAGATTCACTCTACACACACTCCAAACGACAATT 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 GCATCGATGCTCAGTGGAAGGATATCAAGATTCACTCTACACACACTCCAAACGACAATT 1079
Query 1080 CTATAGAGAGACGGATATCACCGGCACCGTCGATTTCATATTCGGAAACTCCGCCGTCGT 1139
|||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 CTATCGAGAGACAGATATCACCGGCACCGTCGATTTCATCTTCGGAAACTCCGCCGTCGT 1139
Query 1140 ATTTCAATCCTGCAACATCGCCGCACGGAAACCTTTACCGGGTCAGAGAAACTTCGTGAC 1199
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1140 ATTTCAATCTTGCAACATCGCCGCTCGTAAACCTTTACCGGGTCAGAGAAACTTCGTGAC 1199
Query 1200 GGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGGAATCGCGATTCAAAACTGCAGGAT 1259
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 1200 GGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGGAATCTCGATTCAAAACTGTAGAAT 1259
Query 1260 CACGGCGGAATCGATGACTTATCTTGGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CACGGCGGAATCGATGACTTATCTTGGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGT 1319
Query 1320 GATGCAATCATTTATCGGCGGGTCGATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG 1379
||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 GATGCAATCTTTTCTCGGCGGGTCTATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG 1379
Query 1380 TTTCGGTCTCAAATCTCTGTTTTACGGAGAATATGGGAATTCGGGTCCTGGATCATCGGT 1439
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1380 TTTCGGTCTCAAATCTCTGTTTTACGGAGAATTTGAGAATTCGGGTCCTGGATCATCGGT 1439
Query 1440 TTCGGGTCGGGTTAAATGGAGTGGGTGTCATCCGTCTTTGACGGTGACGGAAGCGGAAAA 1499
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 1440 TTCGGGTCGGGTTAAATGGAGTGGGTATCATTCTTCTTTGACGGTGACGGAAGCGGAAAA 1499
Query 1500 ATTCACTGTGGCGAGTTTT-ATTGACGGGAATATATGGTTGCCGTCAACGGGCGTTAGTT 1558
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1500 ATTCACTGTGGCG-GTTTTTATTGACGGGAATATGTGGTTGCCGTCAACGGGCGTTAGTT 1558
Query 1559 TCGACCCAGGACTTGTGAATTGAGCTTTGTAATTAAAGCTCCTTTGATAAATAAATTCTT 1618
||||| | ||||||||||| |||||||||||||||| |||| ||||||||||||||| ||
Sbjct 1559 TCGACTCTGGACTTGTGAAATGAGCTTTGTAATTAA-GCTCGTTTGATAAATAAATTATT 1617
Query 1619 ATATAGTTATTTATGTTGTGATTAAAGTAA 1648
||||||| |||||| |||||||||||||||
Sbjct 1618 ATATAGTCATTTATCTTGTGATTAAAGTAA 1647
> Ahg938912 jgi|Araly1|938912|scaffold_503103.1
Length=1618
Score = 551 bits (298), Expect = 7e-156
Identities = 748/961 (78%), Gaps = 47/961 (5%)
Strand=Plus/Plus
Query 622 CGGAGGCTTCTAGAAGCTCCGGTGGAGGAGCTGA-ATGTTGATGCGGTGGTGGC-TCCTG 679
|||| |||| |||||||| | || || || |||| | | | || |||||||| || |
Sbjct 651 CGGAAGCTTTTAGAAGCTTCAGTAGAAGAACTGAGA-CCTCACGCAGTGGTGGCAGCC-G 708
Query 680 ACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTTGTCTACGTCATTAGCGAGTA 739
||||||| |||||||||| | ||||| ||||| ||| |||| | | || || |
Sbjct 709 ACGGAAGCGGGACACACATGAGCATAGCCGAAGCGTTGGCGTCTTTG-GAGAAG-GA-AA 765
Query 740 GTGGGGGCAGGACCAAAATATACCTAAAAGCCGGGACATATCATGAGAA-CATCAACATT 798
|| ||||| | | ||| | ||| |||||| || ||| | ||||| | |||| |||
Sbjct 766 GT---GGCAGAAGCGTAATCCATTTAACAGCCGGAACCTATAAAGAGAATC-TCAATATT 821
Query 799 CCGACG-AAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAAGGGTAAAACAGTCATTGT 857
|||| | || ||||||||||||||||| |||||||| |||||||| |||||||||||| |
Sbjct 822 CCGA-GCAAACAGAAGAACGTTATGTTGGTTGGTGATGGGAAGGGCAAAACAGTCATTAT 880
Query 858 AGGTAGCAGAAGTAACAGAGGCGGCTGGACTACTTACAAAACTGCAACCGTCGCCGCTAT 917
|||||||||||||||||||||||||||| ||||||| || | || || |||||||| ||
Sbjct 881 CGGTAGCAGAAGTAACAGAGGCGGCTGGAATACTTACCAATCCGCTACTGTCGCCGCCAT 940
Query 918 GGGGGAAGGGTTCATAGCGCGGGACATGACATTCGTGAACAACGCCGGACCCAAA-TCGG 976
||| || || |||||||| |||||||| |||||||| |||| |||||||| ||| ||||
Sbjct 941 GGGAGATGGATTCATAGCTCGGGACATAACATTCGTAAACAGTGCCGGACC-AAACTCGG 999
Query 977 AGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTCGTGCATC-GATGCTCAGTG 1035
||||||| || || | || |||||| |||| | ||||| || | | |||||||| |
Sbjct 1000 AGCAAGCTGTAGCATTACGGGTCGGATCAGACAGGTCCGTGGTATA-CAGATGCTCAATC 1058
Query 1036 GAAGGATACCAAGATTCACTCTACACACACTCCAAACGACAATTCTATAGAGAGACGGAT 1095
|| || |||||||| || |||||||| | |||||||||||| ||||||||||| || ||
Sbjct 1059 GATGGTTACCAAGACTCGCTCTACACTCTCTCCAAACGACAGTTCTATAGAGAAACTGAC 1118
Query 1096 ATCACCGGCACCGTCGATTTCATATTCGGAAACTCCGCCGTCGTATTTC-AATCCTGCAA 1154
|| ||||||||||| |||||||| ||||||||||||||||| || |||| || ||||||
Sbjct 1119 ATTACCGGCACCGTTGATTTCATCTTCGGAAACTCCGCCGTTGT-TTTCCAAAGCTGCAA 1177
Query 1155 CATCGCCGCACGGAAAC-CTT-TACCGGGTCAGAGAAACTTCGTGACGGCGCAAGGACGG 1212
| ||| | || ||| || | | || | ||||| || ||| ||||| ||||| |||
Sbjct 1178 CCTCGTATCTCGAAAAGGCTCCT-C-GGA-C-GAGAA-CTACGTCACGGCCCAAGGCCGG 1232
Query 1213 AGCAATCCGGGTCAAAACACCGGAATCGCGATTCAAAACTGCAGGATCAC-GG--CGGAA 1269
| | ||| || |||||||| || | || || || ||||| ||||| || || |
Sbjct 1233 TCCGACCCGAACCAGAACACCGGTATTTCTATCCATAATTGCAGAATCACCGGTTCG-AC 1291
Query 1270 TCGATGACTTATCTT-GGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGTGATGCAATC 1328
| | ||||||| || |||||||| |||||| ||||||||||||| || |||||||||||
Sbjct 1292 -CAA-GACTTAT-TTAGGTCGGCCATGGAAGCAGTATTCGAGGACAGTTGTGATGCAATC 1348
Query 1329 ATTTATCGGCGGGTCGATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG-TTTCGGTC 1387
||||| | ||| |||||||| || ||||||||||||||||||||| || | ||| | |
Sbjct 1349 GTTTATAGACGGCTCGATTCACCCTTCGGGTTGGTCTCCTTGGTCGAGTAGCTTT-GCTT 1407
Query 1388 TCAA-ATCTCTGTT-TTACGGAGAATATGGGAATTCGGGTCCTGGATCATCGGTTTCGGG 1445
| || | |||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1408 TGAAGA-CTCT-TTATTACGGAGAATTTGGGAATTCGGGTCCTGGATCATCGGTTTCGGG 1465
Query 1446 TCGGGTTAAATGGAGTGGG-TGTCATCCGTCTTTGACGGTGACGGAAGCGGAAAAATTCA 1504
|||||||| ||| | ||| | ||| ||| | |||||| |||| ||||| | || |
Sbjct 1466 TCGGGTTAGTTGG-GCGGGGTATCACCCGGCGTTGACGTTGACTGAAGCTCAGGGGTTTA 1524
Query 1505 CTGTGGCGAGTTTTATTGACGGGAATATA-TGGTTGCCGTCAACGGGCGTTAGTTT-CGA 1562
| || || |||| ||||||||||| || |||||||||||||| || || |||| |||
Sbjct 1525 CCGTTTCGGGTTTCATTGACGGGAA-ATCGTGGTTGCCGTCAACAGGTGTC-GTTTTCGA 1582
Query 1563 C 1563
|
Sbjct 1583 C 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69476606880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5