BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G43050.1 Length=1850 Score E Sequences producing significant alignments: (Bits) Value Ahg483407 jgi|Araly1|483407|fgenesh2_kg.4__2467__AT2G43050.1 2615 0.0 Ahg938912 jgi|Araly1|938912|scaffold_503103.1 551 7e-156 > Ahg483407 jgi|Araly1|483407|fgenesh2_kg.4__2467__AT2G43050.1 Length=1700 Score = 2615 bits (1416), Expect = 0.0 Identities = 1573/1650 (95%), Gaps = 5/1650 (0%) Strand=Plus/Plus Query 1 TAATCATTAAGTTTCATAACTATAATGGCTTCATCATCATCAATATCAAATCACAAGATT 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 TAATCATTAAGTTTCATAACTATTATGGCTTCATCATCATCAATATCAAATCACAAGATT 60 Query 61 CCAAACACACTAATGTTTTTGGTGATCGTAAACTTTTTGTACCTAATTCAAACTAATTCA 120 ||||| ||||||||||||||| ||||| |||||||||| |||||||| ||| ||| |||| Sbjct 61 CCAAAAACACTAATGTTTTTGCTGATCTTAAACTTTTTATACCTAATCCAACCTACTTCA 120 Query 121 GCTGTCAGTATCAGTTCCAATTCCAACTCCCACTTCTCAAGATTCTCGAGACATCGAAGC 180 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCTGTGAGTACCAGTTCCAATTCCAACTCCCACTTCTCAAGATTCTCGAGACATCGAAGC 180 Query 181 TCACCATCATCAAAAACCAAACAAGGGTTTCTTGCAACGGTCCAAGAGAGTATGAACCAT 240 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 181 TCACCATCATCAAAACCCAAACAAGGGTTTCTTGCATCGGTCCAAGAGAGTATGAACCAT 240 Query 241 GCTCTCTTGGCTCGTTCTCTTGCTTTCAACCTCACTCTTTCTCATCGAACCGTACAAACC 300 |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| Sbjct 241 GCTCTCTTAGCTCGTTCTCTCGCTTTCAATCTCACTCTTTCTCACCGAACCGTACAAACA 300 Query 301 CACACGTTCGATCCCATCCACGACTGCCTCGAGCTGCTCGACGACACACTTGACATGTTA 360 ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 301 CACACATTCGATCCCGTCCACGACTGCCTCGAGCTACTCGACGACACACTTGACATGTTA 360 Query 361 TCTCGCATCCATGCGGATAATGATGAAGAAGATGTCCATACATGGCTAAGCGCAGCACTC 420 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 361 TCTCGCATACATGCGGATAATGACGAAGAAGATGTCCATACATGGCTAAGCGCAGCACTC 420 Query 421 ACGAACCAAGACACTTGTGAGCAGAGCCTTCAAGAAAAATCCGAGTCATACAAACACGGA 480 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 421 ACGAACCAAGATACTTGTGAGCAGAGCCTTCAAGAAAAATCCAAGTCATACAAACACGGA 480 Query 481 CTTGCGATGGATTTCGTCGCAAGAAACCTAACCGGTTTGTTGACTAGCTCGCTTGACTTG 540 ||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| Sbjct 481 CTTGCGATGGATTTCGTCGCAAGAAACCTCACCGGATTGTTGACTAACTCGCTTGACTTG 540 Query 541 TTCGTATCCGTCAAGTCAAAACACCGGAAACTCTTATCGAAACAAGAGTATTTTCCGACG 600 ||||||||||| ||||||||||||||||||||||||||| ||||| | |||||||||||| Sbjct 541 TTCGTATCCGTGAAGTCAAAACACCGGAAACTCTTATCGGAACAAAAATATTTTCCGACG 600 Query 601 TTCGTTCCTTCGTCGGAGCAACGGAGGCTTCTAGAAGCTCCGGTGGAGGAGCTGAATGTT 660 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 601 TTCGTTCCTTCGTCGGAGCAGCGGAGGCTTCTAGAAGCTCCCGTGGAGGAGCTGAAGGTT 660 Query 661 GATGCGGTGGTGGCT-CCTGACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTT 719 |||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GATGTGGTGGTGGCTGCC-GACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTT 719 Query 720 GTCTACGTCATTAGCGAGTAGTGGGGGCAGGACCAAAATATACCTAAAAGCCGGGACATA 779 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 720 GTCTACGTCATTAGCGAGTAGTGGGGGCAGGACCACAATATACCTAAAAGCCGGGACCTA 779 Query 780 TCATGAGAACATCAACATTCCGACGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TCATGAGAACATCAACATTCCGACGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAA 839 Query 840 GGGTAAAACAGTCATTGTAGGTAGCAGAAGTAACAGAGGCGGCTGGACTACTTACAAAAC 899 ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 840 GGGTAAAACGGTCATTGTAGGTAGCCGAAGTAATAGAGGCGGCTGGACTACTTACAAAAC 899 Query 900 TGCAACCGTCGCCGCTATGGGGGAAGGGTTCATAGCGCGGGACATGACATTCGTGAACAA 959 ||| ||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 900 TGCCACCGTCGCCGCGATGGGAGAGGGGTTCATAGCACGGGACATGACATTCGTGAACAA 959 Query 960 CGCCGGACCCAAATCGGAGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTCGT 1019 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 960 CGCCGGACCCAAATCGGAGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTTGT 1019 Query 1020 GCATCGATGCTCAGTGGAAGGATACCAAGATTCACTCTACACACACTCCAAACGACAATT 1079 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1020 GCATCGATGCTCAGTGGAAGGATATCAAGATTCACTCTACACACACTCCAAACGACAATT 1079 Query 1080 CTATAGAGAGACGGATATCACCGGCACCGTCGATTTCATATTCGGAAACTCCGCCGTCGT 1139 |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1080 CTATCGAGAGACAGATATCACCGGCACCGTCGATTTCATCTTCGGAAACTCCGCCGTCGT 1139 Query 1140 ATTTCAATCCTGCAACATCGCCGCACGGAAACCTTTACCGGGTCAGAGAAACTTCGTGAC 1199 ||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1140 ATTTCAATCTTGCAACATCGCCGCTCGTAAACCTTTACCGGGTCAGAGAAACTTCGTGAC 1199 Query 1200 GGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGGAATCGCGATTCAAAACTGCAGGAT 1259 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || Sbjct 1200 GGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGGAATCTCGATTCAAAACTGTAGAAT 1259 Query 1260 CACGGCGGAATCGATGACTTATCTTGGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGT 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 CACGGCGGAATCGATGACTTATCTTGGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGT 1319 Query 1320 GATGCAATCATTTATCGGCGGGTCGATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG 1379 ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1320 GATGCAATCTTTTCTCGGCGGGTCTATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG 1379 Query 1380 TTTCGGTCTCAAATCTCTGTTTTACGGAGAATATGGGAATTCGGGTCCTGGATCATCGGT 1439 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1380 TTTCGGTCTCAAATCTCTGTTTTACGGAGAATTTGAGAATTCGGGTCCTGGATCATCGGT 1439 Query 1440 TTCGGGTCGGGTTAAATGGAGTGGGTGTCATCCGTCTTTGACGGTGACGGAAGCGGAAAA 1499 |||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| Sbjct 1440 TTCGGGTCGGGTTAAATGGAGTGGGTATCATTCTTCTTTGACGGTGACGGAAGCGGAAAA 1499 Query 1500 ATTCACTGTGGCGAGTTTT-ATTGACGGGAATATATGGTTGCCGTCAACGGGCGTTAGTT 1558 ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1500 ATTCACTGTGGCG-GTTTTTATTGACGGGAATATGTGGTTGCCGTCAACGGGCGTTAGTT 1558 Query 1559 TCGACCCAGGACTTGTGAATTGAGCTTTGTAATTAAAGCTCCTTTGATAAATAAATTCTT 1618 ||||| | ||||||||||| |||||||||||||||| |||| ||||||||||||||| || Sbjct 1559 TCGACTCTGGACTTGTGAAATGAGCTTTGTAATTAA-GCTCGTTTGATAAATAAATTATT 1617 Query 1619 ATATAGTTATTTATGTTGTGATTAAAGTAA 1648 ||||||| |||||| ||||||||||||||| Sbjct 1618 ATATAGTCATTTATCTTGTGATTAAAGTAA 1647 > Ahg938912 jgi|Araly1|938912|scaffold_503103.1 Length=1618 Score = 551 bits (298), Expect = 7e-156 Identities = 748/961 (78%), Gaps = 47/961 (5%) Strand=Plus/Plus Query 622 CGGAGGCTTCTAGAAGCTCCGGTGGAGGAGCTGA-ATGTTGATGCGGTGGTGGC-TCCTG 679 |||| |||| |||||||| | || || || |||| | | | || |||||||| || | Sbjct 651 CGGAAGCTTTTAGAAGCTTCAGTAGAAGAACTGAGA-CCTCACGCAGTGGTGGCAGCC-G 708 Query 680 ACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTTGTCTACGTCATTAGCGAGTA 739 ||||||| |||||||||| | ||||| ||||| ||| |||| | | || || | Sbjct 709 ACGGAAGCGGGACACACATGAGCATAGCCGAAGCGTTGGCGTCTTTG-GAGAAG-GA-AA 765 Query 740 GTGGGGGCAGGACCAAAATATACCTAAAAGCCGGGACATATCATGAGAA-CATCAACATT 798 || ||||| | | ||| | ||| |||||| || ||| | ||||| | |||| ||| Sbjct 766 GT---GGCAGAAGCGTAATCCATTTAACAGCCGGAACCTATAAAGAGAATC-TCAATATT 821 Query 799 CCGACG-AAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAAGGGTAAAACAGTCATTGT 857 |||| | || ||||||||||||||||| |||||||| |||||||| |||||||||||| | Sbjct 822 CCGA-GCAAACAGAAGAACGTTATGTTGGTTGGTGATGGGAAGGGCAAAACAGTCATTAT 880 Query 858 AGGTAGCAGAAGTAACAGAGGCGGCTGGACTACTTACAAAACTGCAACCGTCGCCGCTAT 917 |||||||||||||||||||||||||||| ||||||| || | || || |||||||| || Sbjct 881 CGGTAGCAGAAGTAACAGAGGCGGCTGGAATACTTACCAATCCGCTACTGTCGCCGCCAT 940 Query 918 GGGGGAAGGGTTCATAGCGCGGGACATGACATTCGTGAACAACGCCGGACCCAAA-TCGG 976 ||| || || |||||||| |||||||| |||||||| |||| |||||||| ||| |||| Sbjct 941 GGGAGATGGATTCATAGCTCGGGACATAACATTCGTAAACAGTGCCGGACC-AAACTCGG 999 Query 977 AGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTCGTGCATC-GATGCTCAGTG 1035 ||||||| || || | || |||||| |||| | ||||| || | | |||||||| | Sbjct 1000 AGCAAGCTGTAGCATTACGGGTCGGATCAGACAGGTCCGTGGTATA-CAGATGCTCAATC 1058 Query 1036 GAAGGATACCAAGATTCACTCTACACACACTCCAAACGACAATTCTATAGAGAGACGGAT 1095 || || |||||||| || |||||||| | |||||||||||| ||||||||||| || || Sbjct 1059 GATGGTTACCAAGACTCGCTCTACACTCTCTCCAAACGACAGTTCTATAGAGAAACTGAC 1118 Query 1096 ATCACCGGCACCGTCGATTTCATATTCGGAAACTCCGCCGTCGTATTTC-AATCCTGCAA 1154 || ||||||||||| |||||||| ||||||||||||||||| || |||| || |||||| Sbjct 1119 ATTACCGGCACCGTTGATTTCATCTTCGGAAACTCCGCCGTTGT-TTTCCAAAGCTGCAA 1177 Query 1155 CATCGCCGCACGGAAAC-CTT-TACCGGGTCAGAGAAACTTCGTGACGGCGCAAGGACGG 1212 | ||| | || ||| || | | || | ||||| || ||| ||||| ||||| ||| Sbjct 1178 CCTCGTATCTCGAAAAGGCTCCT-C-GGA-C-GAGAA-CTACGTCACGGCCCAAGGCCGG 1232 Query 1213 AGCAATCCGGGTCAAAACACCGGAATCGCGATTCAAAACTGCAGGATCAC-GG--CGGAA 1269 | | ||| || |||||||| || | || || || ||||| ||||| || || | Sbjct 1233 TCCGACCCGAACCAGAACACCGGTATTTCTATCCATAATTGCAGAATCACCGGTTCG-AC 1291 Query 1270 TCGATGACTTATCTT-GGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGTGATGCAATC 1328 | | ||||||| || |||||||| |||||| ||||||||||||| || ||||||||||| Sbjct 1292 -CAA-GACTTAT-TTAGGTCGGCCATGGAAGCAGTATTCGAGGACAGTTGTGATGCAATC 1348 Query 1329 ATTTATCGGCGGGTCGATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG-TTTCGGTC 1387 ||||| | ||| |||||||| || ||||||||||||||||||||| || | ||| | | Sbjct 1349 GTTTATAGACGGCTCGATTCACCCTTCGGGTTGGTCTCCTTGGTCGAGTAGCTTT-GCTT 1407 Query 1388 TCAA-ATCTCTGTT-TTACGGAGAATATGGGAATTCGGGTCCTGGATCATCGGTTTCGGG 1445 | || | |||| || ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1408 TGAAGA-CTCT-TTATTACGGAGAATTTGGGAATTCGGGTCCTGGATCATCGGTTTCGGG 1465 Query 1446 TCGGGTTAAATGGAGTGGG-TGTCATCCGTCTTTGACGGTGACGGAAGCGGAAAAATTCA 1504 |||||||| ||| | ||| | ||| ||| | |||||| |||| ||||| | || | Sbjct 1466 TCGGGTTAGTTGG-GCGGGGTATCACCCGGCGTTGACGTTGACTGAAGCTCAGGGGTTTA 1524 Query 1505 CTGTGGCGAGTTTTATTGACGGGAATATA-TGGTTGCCGTCAACGGGCGTTAGTTT-CGA 1562 | || || |||| ||||||||||| || |||||||||||||| || || |||| ||| Sbjct 1525 CCGTTTCGGGTTTCATTGACGGGAA-ATCGTGGTTGCCGTCAACAGGTGTC-GTTTTCGA 1582 Query 1563 C 1563 | Sbjct 1583 C 1583 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69476606880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5